BAC Information

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BAC

Clone NameB6Ng01-243I20
Chromosome1 (Build37)
Map Location 175,656,912 - 175,658,031
singlet/doubletsinglet
Overlap geneAI607873
Upstream geneLOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972
Downstream geneIfi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243I20.bB6Ng01-243I20.g
ACCGA052906GA052907
length1,1181,180
definitionB6Ng01-243I20.b B6Ng01-243I20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttaaatttccacaccttcattgtgtcttctgagaaaatctgaa
attaaactttagtgttaaattcccctttcattatttaaaatatagtcact
ttatcaaaaaatcttgataaaataggaaagaatatgagaatatgacttct
ttaaagatctaatcctgccttgtgggaaatgtcttcattccatggcagaa
taatctacttggtttcttaatctcatcttctcaaactgtatcaaggatag
gagtttggctctttattcacaattgagttgcccctaatacaggtaaggta
gaaataaagaaataaaatctaagaagaaaatgtgctataaactgaacagt
gtctgggactagggtggctatagctggattgtccttgccaggaaaaggcc
aaaggttattgaaaaatctctttctaaagaattttcctggtggatcctgg
agaagaattgtaagagactacagaaatccccaaagtgaggaatccttgcc
tggtttctttctgctatggaaggcaatgatttcctgtgttaagtacattg
agcaaattccagttgagcaaatttaaacctaaaatctcagattgcagagg
acattttacaagtattgcaatggcttaccttaattactaagtactctcca
ctcacaaatgtcccctttgcttgtgagaaaagataagaaattttaggagt
tgcattagctctttgtctcagtgtatttgagatgaccattgttgggttaa
cgttcacatcagagacacaggaagctctgtatatctccaaaaatccattg
cacccaaaataatctgatatggcaatgatatttcttgggatgaacttgct
tattagagctgtgtcaaaaaccttcactctgaagaactcagtttcagtag
ccactgtagcatgaaacatccttttatcttcttccaggtcatatgtaaat
ggttctgttactttcagcaccatcacttgtttgggaccttgatggtgacc
ttctccctagaaggctctttgggtacagttcctctccttggtgtctacat
taaaacacacattgggataagaacatatagtcagaacaatcatcggaaaa
aaatgccactgaatagaa
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggattttagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgctcggggtctcagcaa
acacagaagtggatgctcacagtcagctaatggatggatcatagggctcc
caatggagagctagagaaagtagccaaggagctaaagggatctgcaccct
atagtggaacaacattatgagctaaccagtaccccggagctcttgactct
agctgcatatattatcaaagatgctagtcgcatccactgaaggagagctc
aatgaatcttcaactttaatgcctcaatcagtgtatgactcatggactct
ataaatgggtggaattggctgtcggtgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175656912_175658031
seq2: B6Ng01-243I20.b_45_1162

seq1  GAATTCTTTAAATTTCCACACCTTCATTGTGTCTTCTGAGAAAATCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAATTTCCACACCTTCATTGTGTCTTCTGAGAAAATCTGAA  50

seq1  ATTAAACTTTAGTGTTAAATTCCCCTTTCATTATTTAAAATATAGTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTTTAGTGTTAAATTCCCCTTTCATTATTTAAAATATAGTCACT  100

seq1  TTATCAAAAAATCTTGATAAAATAGGAAAGAATATGAGAATATGACTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAAAAATCTTGATAAAATAGGAAAGAATATGAGAATATGACTTCT  150

seq1  TTAAAGATCTAATCCTGCCTTGTGGGAAATGTCTTCATTCCATGGCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATCTAATCCTGCCTTGTGGGAAATGTCTTCATTCCATGGCAGAA  200

seq1  TAATCTACTTGGTTTCTTAATCTCATCTTCTCAAACTGTATCAAGGATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTACTTGGTTTCTTAATCTCATCTTCTCAAACTGTATCAAGGATAG  250

seq1  GAGTTTGGCTCTTTATTCACAATTGAGTTGCCCCTAATACAGGTAAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGGCTCTTTATTCACAATTGAGTTGCCCCTAATACAGGTAAGGTA  300

seq1  GAAATAAAGAAATAAAATCTAAGAAGAAAATGTGCTATAAACTGAACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAGAAATAAAATCTAAGAAGAAAATGTGCTATAAACTGAACAGT  350

seq1  GTCTGGGACTAGGGTGGCTATAGCTGGATTGTCCTTGCCAGGAAAAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGACTAGGGTGGCTATAGCTGGATTGTCCTTGCCAGGAAAAGGCC  400

seq1  AAAGGTTATTGAAAAATCTCTTTCTAAAGAATTTTCCTGGTGGATCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTATTGAAAAATCTCTTTCTAAAGAATTTTCCTGGTGGATCCTGG  450

seq1  AGAAGAATTGTAAGAGACTACAGAAATCCCCAAAGTGAGGAATCCTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATTGTAAGAGACTACAGAAATCCCCAAAGTGAGGAATCCTTGCC  500

seq1  TGGTTTCTTTCTGCTATGGAAGGCAATGATTTCCTGTGTTAAGTACATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTTTCTGCTATGGAAGGCAATGATTTCCTGTGTTAAGTACATTG  550

seq1  AGCAAATTCCAGTTGAGCAAATTTAAACCTAAAATCTCAGATTGCAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTCCAGTTGAGCAAATTTAAACCTAAAATCTCAGATTGCAGAGG  600

seq1  ACATTTTACAAGTATTGCAATGGCTTACCTTAATTACTAAGTACTCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTACAAGTATTGCAATGGCTTACCTTAATTACTAAGTACTCTCCA  650

seq1  CTCACAAATGTCCCCTTTGCTTGTGAGAAAAGATAAGAAATTTTAGGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAATGTCCCCTTTGCTTGTGAGAAAAGATAAGAAATTTTAGGAGT  700

seq1  TGCATTAGCTCTTTGTCTCAGTGTATTTGAGATGACCATTGTTGGGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAGCTCTTTGTCTCAGTGTATTTGAGATGACCATTGTTGGGTTAA  750

seq1  CGTTCACATCAGAGACACAGGAAGCTCTGTATATCTCCAAAAATCCATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCACATCAGAGACACAGGAAGCTCTGTATATCTCCAAAAATCCATTG  800

seq1  CACCCAAAATAATCTGATATGGCAATGATATTTCTTGGGATGAACTTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAAATAATCTGATATGGCAATGATATTTCTTGGGATGAACTTGCT  850

seq1  TATTAGAGCTGTGTCAAAAACCTTCACTCTGAAGAACTCAGTTTCAGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGCTGTGTCAAAAACCTTCACTCTGAAGAACTCAGTTTCAGTAG  900

seq1  CCACTGTAGCATGAAACATCCTTTTATCTTCTTCCAGGTCATATGTAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTAGCATGAAACATCCTTTTATCTTCTTCCAGGTCATATGTAAAT  950

seq1  GGTTCTGTTACTTTCAGCACCATCACTTGTTTGGGACCTTGATGGTGACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTTACTTTCAGCACCATCACTTGTTTGGGACCTTGATGGTGACC  1000

seq1  TTCTTCCCTAGAAGGCTCCTTTGGTACAGTTCCTCTCCTTGGTGTCTACA  1050
      ||| |||||||||||||| || ||||||||||||||||||||||||||||
seq2  TTC-TCCCTAGAAGGCTCTTTGGGTACAGTTCCTCTCCTTGGTGTCTACA  1049

seq1  -TAAAACACACATTGGGATAAGACAATATAGTTCAGACAAATCATAAGGA  1099
       ||||||||||||||||||||||  |||||| |||||  ||||||  |||
seq2  TTAAAACACACATTGGGATAAGAACATATAG-TCAGAACAATCAT-CGGA  1097

seq1  AAAAAATGCCACTGAATAGAA  1120
      |||||||||||||||||||||
seq2  AAAAAATGCCACTGAATAGAA  1118