BAC Information

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BAC

Clone NameB6Ng01-243P11
Chromosome1 (Build37)17 (Build37)
Map Location 45,392,649 - 45,392,84175,902,367 - 75,903,414
singlet/doubletsingletsinglet
Overlap geneCol3a1
Upstream geneLOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752, LOC383640
Downstream geneCol5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243P11.bB6Ng01-243P11.g
ACCGA053215GA053216
length9911,040
definitionB6Ng01-243P11.b B6Ng01-243P11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,392,649 - 45,392,841)(75,902,367 - 75,903,414)
sequence
gaattcaaagtaactctgaaacttcaagaaaatgccactgtaaagaattt
cagaaaaaaatcaaaaaaccacgaaactcaagaagaacgaagaccaaagt
gtggatacttcattcctccttagaatggggaacaaaatacccatggagga
agttacagagacaaagtttggagctgagacagaaggaaggaccatccaga
tactgccccacccagggatgcatcccataaacaaccaccaaactcagaca
ctattgcatatgccagcaagatttggctgagaggaccctgatatagctgt
attgagtgaggctatgccagtgcctggcaaatacagaagtggatgctcac
agtcatctatagaatggaacacagggccccaaatggaggagcttgagaaa
gtacctaaggagctgaaggggtctgcaacccgatagaaacaacaatatga
actaaccagtacccccagagctcgtgtctctagctgcatatgtagcagaa
gatggcctagtcagagaggccccttggtcctgcaaactttatatgcccca
gtacaggggaacgccagggccaagaagtgagagtggatgggtaggagagc
agggcagggagagggtatagagtacttttgtgatagcatttgaaatgtaa
atgaagaaaatatctataaaaggagaaaaaagaaaataaaatcttataga
aaacaaaaaaatttttttaaatttttttctatgaatgtttataccgcatg
tgtgattggtgttctctaaggccaaaatagggtgttggatcccttggatt
caactgacaactgtaagacaacatgtagacactgagaacaaaacccgggt
tctctgtaagagcagcaactgttcttaactactgagctatctttccatcc
ctgtggtggtttaaataggtttgtcccctgtagactcatgtgttttgaat
gcttggccattatgaaatgacacaattaagggtggtgtgtc

gaattccaaaccacatattccagaatctgggagtggacaggggagaaagt
tgctgcttgaaaattctacttttccatctcttcccagaactggaatgaaa
tgacagagttggtctcctccaatggcaattactgcaattaccgcaaagcc
tttgctgactgtgatggcttcaaaatccccatccttggcgtgcacttgaa
agacttgatagcagtccatgtcattttcccagactggatggaggagaaca
aagtgaacgttgtgaaaatgcaccagctttctgttaccctgagtgaactg
gtctccctgcagaatgcctctcaccacttggaacctaacatggatttgat
caacctactcactgtgagtcccaggggtcaatagtatgctatttgcactt
tgtatcttaatttccagtgtcatcgaaagatatgttgtaacaattcactt
tagagggagaataatttgaggtcagtccatggagcctaggcctaaggagc
ctaggactaggatgaggctctcaaaggatgaggaaaacagaaacttacac
ccacaaggagcatgatttgagactgtagcctcttggcaaatacattttcc
ttctttgggagaagcctagtctctgcctacatgaacctcttccctaagag
ccactttagcccattactctccttcagcatacttggccaactaatcagct
ctttccttatgtcctcaagtcctctgcttctattttgattgataattcaa
agactctgtctttattttatttatttatttatttatttatttatttattt
atttatttatttattggtttttcgagatagggtttctctgtgtagccctg
gctgtcctggaactcactctgtagaccaggctagcctcgaactcagaaat
ccgcctgcctctgcttcccgagtgctgggattaaagggcatgcgccacca
tgcccagctctgtcttttattccttaatttaaacttttttatttcgtatt
atattttatgtgtgtgcatggtagggggaagaaagaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_45392649_45392841
seq2: B6Ng01-243P11.b_353_542

seq1  GAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGGTGCTTATAGTCATC  50
      ||||||||||||||||||||||||||||||||||| |||| | |||||||
seq2  GAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCATC  50

seq1  TATTGGATGGAATACAGGGCCCCTAATGGAGGAGCTAGAGAAAGTACCCA  100
      ||| | |||||| |||||||||| |||||||||||| ||||||||||| |
seq2  TATAGAATGGAACACAGGGCCCCAAATGGAGGAGCTTGAGAAAGTACCTA  100

seq1  AAGAACTGAAGGGGTCTGAAACCCTATAGGTGGAGCAACAATATCAACTA  150
      | || ||||||||||||| ||||| |||   | | ||||||||| |||||
seq2  AGGAGCTGAAGGGGTCTGCAACCCGATA---GAAACAACAATATGAACTA  147

seq1  ACCAGTACCCCCAGAGCTCATGTCTCTAGCTGCATATGTAGCA  193
      ||||||||||||||||||| |||||||||||||||||||||||
seq2  ACCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCATATGTAGCA  190


seq1: chr17_75902367_75903414
seq2: B6Ng01-243P11.g_66_1105

seq1  GAATTCCAAACCACATATTCCAGAATCTGGGAGTGGACAGGGGAGAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACCACATATTCCAGAATCTGGGAGTGGACAGGGGAGAAAGT  50

seq1  TGCTGCTTGAAAATTCTACTTTTCCATCTCTTCCCAGAACTGGAATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTGAAAATTCTACTTTTCCATCTCTTCCCAGAACTGGAATGAAA  100

seq1  TGACAGAGTTGGTCTCCTCCAATGGCAATTACTGCAATTACCGCAAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGTTGGTCTCCTCCAATGGCAATTACTGCAATTACCGCAAAGCC  150

seq1  TTTGCTGACTGTGATGGCTTCAAAATCCCCATCCTTGGCGTGCACTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGACTGTGATGGCTTCAAAATCCCCATCCTTGGCGTGCACTTGAA  200

seq1  AGACTTGATAGCAGTCCATGTCATTTTCCCAGACTGGATGGAGGAGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGATAGCAGTCCATGTCATTTTCCCAGACTGGATGGAGGAGAACA  250

seq1  AAGTGAACGTTGTGAAAATGCACCAGCTTTCTGTTACCCTGAGTGAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAACGTTGTGAAAATGCACCAGCTTTCTGTTACCCTGAGTGAACTG  300

seq1  GTCTCCCTGCAGAATGCCTCTCACCACTTGGAACCTAACATGGATTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCTGCAGAATGCCTCTCACCACTTGGAACCTAACATGGATTTGAT  350

seq1  CAACCTACTCACTGTGAGTCCCAGGGGTCAATAGTATGCTATTTGCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTACTCACTGTGAGTCCCAGGGGTCAATAGTATGCTATTTGCACTT  400

seq1  TGTATCTTAATTTCCAGTGTCATCGAAAGATATGTTGTAACAATTCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTAATTTCCAGTGTCATCGAAAGATATGTTGTAACAATTCACTT  450

seq1  TAGAGGGAGAATAATTTGAGGTCAGTCCATGGAGCCTAGGCCTAAGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGAGAATAATTTGAGGTCAGTCCATGGAGCCTAGGCCTAAGGAGC  500

seq1  CTAGGACTAGGATGAGGCTCTCAAAGGATGAGGAAAACAGAAACTTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACTAGGATGAGGCTCTCAAAGGATGAGGAAAACAGAAACTTACAC  550

seq1  CCACAAGGAGCATGATTTGAGACTGTAGCCTCTTGGCAAATACATTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGAGCATGATTTGAGACTGTAGCCTCTTGGCAAATACATTTTCC  600

seq1  TTCTTTGGGAGAAGCCTAGTCTCTGCCTACATGAACCTCTTCCCTAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGGAGAAGCCTAGTCTCTGCCTACATGAACCTCTTCCCTAAGAG  650

seq1  CCACTTTAGCCCATTACTCTCCTTCAGCATACTTGGCCAACTAATCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTAGCCCATTACTCTCCTTCAGCATACTTGGCCAACTAATCAGCT  700

seq1  CTTTCCTTATGTCCTCAAGTCCTCTGCTTCTATTTTGATTGATAATTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTATGTCCTCAAGTCCTCTGCTTCTATTTTGATTGATAATTCAA  750

seq1  AGACTCTGTCTTTATTTTATTTATTTATTTATTTATTTATTTATTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGTCTTTATTTTATTTATTTATTTATTTATTTATTTATTTATTT  800

seq1  ATTTATTTATTTATTGGTTTTTCGAGATAGGGTTTCTCTGTGTAGCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTGGTTTTTCGAGATAGGGTTTCTCTGTGTAGCCCTG  850

seq1  GCTGTCCTGGAACTCACTCTGTAGACCAGGCTAGCCTCGAACTCAGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTCACTCTGTAGACCAGGCTAGCCTCGAACTCAGAAAT  900

seq1  CCGCCTGCCTCTGCTTCCCGAGTGCTGGGATTAAA-GGCATGCGCCACCA  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCGCCTGCCTCTGCTTCCCGAGTGCTGGGATTAAAGGGCATGCGCCACCA  950

seq1  TGCCCAGCTCTGTC-TTTATT-CTTAATTTAAAC-TTTTTATTTCGTATT  996
      |||||||||||||| |||||| |||||||||||| |||||||||||||||
seq2  TGCCCAGCTCTGTCTTTTATTCCTTAATTTAAACTTTTTTATTTCGTATT  1000

seq1  ATA-TTTATGTGTGTGCATGGTAGGGGGAAGAAGAGGAAGAGAGAGAGAA  1045
      ||| |||||||||||||||||||||||||||||             ||||
seq2  ATATTTTATGTGTGTGCATGGTAGGGGGAAGAA-------------AGAA  1037

seq1  GGA  1048
      |||
seq2  GGA  1040


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