BAC Information

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BAC

Clone NameB6Ng01-244A17
Chromosome1 (Build37)
Map Location 142,605,113 - 142,750,504
singlet/doubletdoublet
Overlap genenone
Upstream geneEG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244A17.bB6Ng01-244A17.g
ACCGA053275GA053276
length1,1711,019
definitionB6Ng01-244A17.b B6Ng01-244A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,605,113 - 142,606,317)(142,749,478 - 142,750,504)
sequence
gaattcttgacctctatagattaggagtttacacactgatcgtagaggac
attttgttggtttagaacatgtctcatattatgcaagaaaatgtgttctc
aggttaaactttaatgcaaatacaaactaacactgcattgttcatctttc
agggttattttcctgtgtgacaacagatatcagttttgttactagtcttc
tcttgttcaaagactcttccaactctatgtgatgtggaattccaatataa
atctgaactgagaaatttctcatatctggtaaattcctgctttgttgcta
gttctccatgacagttatgatcaggaattgagcagaataaactatagggg
taaacagctaaaagtttttacctttatgtttccatctgattaatattatt
gagcatgaaatattcagtgctcattccacggctatcaaacactaattggt
actaattcttatagcccatgacaaaccttatcaataataatcacatcagg
acattttagattaaaacagtccacagcagtattagatcatctttttgtgt
tacatcctaaccatatttatccagcaaagaatcactgcaactttttcagt
gtgaaatccacaatagcacatagcaagcatagtaaacactgcagatttat
taaaacttagtccagccttaattttttgtgaaaatagctgttattttgtt
acctccaataactgattttacatggcattttttctaggctcagtcttaca
agaaaaattgtaggaacaaagccatttaaaatttacacacatggttctac
atttcctgcaaggatatgctgaaaaaagtaatagattgcatttttgcttt
ccaccataaagttcctaaaattgagtgttaggaattaagtgaaaccaagt
agcttatactgtagcaacatttcaaccgaatgggatcagatatgtagggc
aatgcttatgtaggtaaataaactgtgtgtagtataatttctctagagac
tttagaagtatatgacttataaaataaagaattaaaattttgtgagtaaa
catcaaaacacacataataaagtcatttagtttttggagaaatactttac
agtacaagagccatgtcaagctatggtctaattcttggtcattatcatgg
tccatccaagtcatatgcatt

gaattctatttagctattaaaaaacaaagacataaagtgttttggggaca
aattgatggaacttgagaatataatcctgaatgaggtgacccagatccaa
aaggacatgcatgttatgtagtcatttataagtgatattagacataaaat
ataggatggctatgccatatataaattcttatctgataaaagaaccacaa
gtgtttgtgacatttttctgttacttgttcaaaatatttaacctttacca
gtacttctcacactttacttgtatcatcatcaacatttacagatcatgtt
caaatatcatagtggtgagcatagaacagtcttatttctcaagttggaaa
aacagaggcaaaaatgacagtgtggtaaagtttacagattttcaatgaaa
tattacattatattaataacagatttgagaaaaacaaaagaagtgtagaa
attttaaaatataaatctttagccacatttgcattaaatttatacttaac
tttgaaaggaaacttcatgtactcttctacaaaaatgtattttggcttaa
atattttatcttttaccatcaatgttcaaataacaatatgttgaggtttt
ttttttctacataattttcatcagatatattgacgaactggctctaacag
tgacattagaatgatagcttttaaataattaaatatatttattgtcattt
tcatctacagtcacctgtattctctctaatatccttataatttagaagaa
atttgagatataaatatgtatcacattcatgtaaatggaaacaaatatcc
atatgtacagatgaatatatgaggcatcgatagatttgattagaaagtaa
agaatcagaaaatgaattttaatttcattattaatgagtcagtttttttc
ttttttttttctatctattgttttatacgtatttcctcattacattccaa
tgctatcccaaagtctcccccccctccacccccccactccctactaccca
ataccaattttttggccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142605113_142606317
seq2: B6Ng01-244A17.b_44_1214

seq1  GAATTCTTGACCTCTATAGATTAGGAGTTTACACACTGATCGTAGAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACCTCTATAGATTAGGAGTTTACACACTGATCGTAGAGGAC  50

seq1  ATTTTGTTGGTTTAGAACATGTCTCATATTATGCAAGAAAATGTGTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTGGTTTAGAACATGTCTCATATTATGCAAGAAAATGTGTTCTC  100

seq1  AGGTTAAACTTTAATGCAAATACAAACTAACACTGCATTGTTCATCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAACTTTAATGCAAATACAAACTAACACTGCATTGTTCATCTTTC  150

seq1  AGGGTTATTTTCCTGTGTGACAACAGATATCAGTTTTGTTACTAGTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTATTTTCCTGTGTGACAACAGATATCAGTTTTGTTACTAGTCTTC  200

seq1  TCTTGTTCAAAGACTCTTCCAACTCTATGTGATGTGGAATTCCAATATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCAAAGACTCTTCCAACTCTATGTGATGTGGAATTCCAATATAA  250

seq1  ATCTGAACTGAGAAATTTCTCATATCTGGTAAATTCCTGCTTTGTTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACTGAGAAATTTCTCATATCTGGTAAATTCCTGCTTTGTTGCTA  300

seq1  GTTCTCCATGACAGTTATGATCAGGAATTGAGCAGAATAAACTATAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCATGACAGTTATGATCAGGAATTGAGCAGAATAAACTATAGGGG  350

seq1  TAAACAGCTAAAAGTTTTTACCTTTATGTTTCCATCTGATTAATATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGCTAAAAGTTTTTACCTTTATGTTTCCATCTGATTAATATTATT  400

seq1  GAGCATGAAATATTCAGTGCTCATTCCACGGCTATCAAACACTAATTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGAAATATTCAGTGCTCATTCCACGGCTATCAAACACTAATTGGT  450

seq1  ACTAATTCTTATAGCCCATGACAAACCTTATCAATAATAATCACATCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTCTTATAGCCCATGACAAACCTTATCAATAATAATCACATCAGG  500

seq1  ACATTTTAGATTAAAACAGTCCACAGCAGTATTAGATCATCTTTTTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAGATTAAAACAGTCCACAGCAGTATTAGATCATCTTTTTGTGT  550

seq1  TACATCCTAACCATATTTATCCAGCAAAGAATCACTGCAACTTTTTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCTAACCATATTTATCCAGCAAAGAATCACTGCAACTTTTTCAGT  600

seq1  GTGAAATCCACAATAGCACATAGCAAGCATAGTAAACACTGCAGATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCCACAATAGCACATAGCAAGCATAGTAAACACTGCAGATTTAT  650

seq1  TAAAACTTAGTCCAGCCTTAATTTTTTGTGAAAATAGCTGTTATTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTAGTCCAGCCTTAATTTTTTGTGAAAATAGCTGTTATTTTGTT  700

seq1  ACCTCCAATAACTGATTTTACATGGCATTTTTTCTAGGCTCAGTCTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAATAACTGATTTTACATGGCATTTTTTCTAGGCTCAGTCTTACA  750

seq1  AGAAAAATTGTAGGAACAAAGCCATTTAAAATTTACACACATGGTTCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTGTAGGAACAAAGCCATTTAAAATTTACACACATGGTTCTAC  800

seq1  ATTTCCTGCAAGGATATGCTGAAAAAAGTAATAGATTGCATTTTTGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGCAAGGATATGCTGAAAAAAGTAATAGATTGCATTTTTGCTTT  850

seq1  CCACCATAAAGTTCCTAAAATTGAGTGTTAGGAATTAAGTGAAACCAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATAAAGTTCCTAAAATTGAGTGTTAGGAATTAAGTGAAACCAAGT  900

seq1  AGCTTATACTGTAGCAAACATTTCAACCGAATGGGAATCAGATATGTAGG  950
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  AGCTTATACTGTAGC-AACATTTCAACCGAATGGG-ATCAGATATGTAGG  948

seq1  GCAATGCTTATGTTAGGTAAATAAACTTGTGTGTAGTATATTTCCTCTAG  1000
      |||||||||||| ||||||||||||| ||||||||||||| || ||||||
seq2  GCAATGCTTATG-TAGGTAAATAAAC-TGTGTGTAGTATAATTTCTCTAG  996

seq1  AGACTTTAGAAGGTATATGAACTTAATTAAAATAAAGAATTTAAAAATTT  1050
      ||||||||||| ||||||| |||||  ||||||||||||||  |||||||
seq2  AGACTTTAGAA-GTATATG-ACTTA--TAAAATAAAGAATT--AAAATTT  1040

seq1  TGTGAGTAAACATCAAAACACACAT-ATAAAGTCATTTTAAATTTTTTGA  1099
      ||||||||||||||||||||||||| ||||||||||||  | ||||| ||
seq2  TGTGAGTAAACATCAAAACACACATAATAAAGTCATTT--AGTTTTTGGA  1088

seq1  GAAATTACTTTTACAGTACAAGGAGCATTGTTCATAGTTTAATTGTTCTA  1149
      |||| ||| |||||||||||| ||||  || ||| || |    || ||| 
seq2  GAAA-TAC-TTTACAGTACAA-GAGCCATG-TCA-AGCT---ATGGTCT-  1129

seq1  AATTCTTTGGTGTCATTTTTATTTCACATTGTTTCCATACTAAGGTCATA  1199
      |||||||    |||||| |       ||| |  ||||| |  | ||||||
seq2  AATTCTT---GGTCATTAT-------CATGG--TCCATCC--AAGTCATA  1165

seq1  TGCATT  1205
      ||||||
seq2  TGCATT  1171


seq1: chr1_142749478_142750504
seq2: B6Ng01-244A17.g_65_1083 (reverse)

seq1  AGGGCCAAAAAA-TGGGAATGGGTAGGTAGGGGAGTGGGGGGGGGGA-GG  48
      |||||||||||| ||| | |||||| ||| ||||||||||||| ||| ||
seq2  AGGGCCAAAAAATTGGTATTGGGTA-GTA-GGGAGTGGGGGGGTGGAGGG  48

seq1  GGGGGAGACTTTTGGGATAGCATTGGAAATGTAATTGAGGAAAATACGTA  98
      ||||||||| |||||||||||||||| ||||||| ||||| |||||||||
seq2  GGGGGAGAC-TTTGGGATAGCATTGG-AATGTAA-TGAGG-AAATACGTA  94

seq1  ATAAAAACAAATAAGATAGAAAAAAAAAGAAAAAAAACTGACTCATTAAT  148
         |||||||   |||||||||||||||  ||||||||||||||||||||
seq2  --TAAAACAA--TAGATAGAAAAAAAAAAGAAAAAAACTGACTCATTAAT  140

seq1  AATGAAATTAAAATTCATTTTCTGATTCTTTACTTTCTAATCAAATCTAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATTAAAATTCATTTTCTGATTCTTTACTTTCTAATCAAATCTAT  190

seq1  CGATGCCTCATATATTCATCTGTACATATGGATATTTGTTTCCATTTACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGCCTCATATATTCATCTGTACATATGGATATTTGTTTCCATTTACA  240

seq1  TGAATGTGATACATATTTATATCTCAAATTTCTTCTAAATTATAAGGATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGATACATATTTATATCTCAAATTTCTTCTAAATTATAAGGATA  290

seq1  TTAGAGAGAATACAGGTGACTGTAGATGAAAATGACAATAAATATATTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAGAATACAGGTGACTGTAGATGAAAATGACAATAAATATATTTA  340

seq1  ATTATTTAAAAGCTATCATTCTAATGTCACTGTTAGAGCCAGTTCGTCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAAAAGCTATCATTCTAATGTCACTGTTAGAGCCAGTTCGTCAA  390

seq1  TATATCTGATGAAAATTATGTAGAAAAAAAAAACCTCAACATATTGTTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGATGAAAATTATGTAGAAAAAAAAAACCTCAACATATTGTTAT  440

seq1  TTGAACATTGATGGTAAAAGATAAAATATTTAAGCCAAAATACATTTTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACATTGATGGTAAAAGATAAAATATTTAAGCCAAAATACATTTTTG  490

seq1  TAGAAGAGTACATGAAGTTTCCTTTCAAAGTTAAGTATAAATTTAATGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGTACATGAAGTTTCCTTTCAAAGTTAAGTATAAATTTAATGCA  540

seq1  AATGTGGCTAAAGATTTATATTTTAAAATTTCTACACTTCTTTTGTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGCTAAAGATTTATATTTTAAAATTTCTACACTTCTTTTGTTTTT  590

seq1  CTCAAATCTGTTATTAATATAATGTAATATTTCATTGAAAATCTGTAAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATCTGTTATTAATATAATGTAATATTTCATTGAAAATCTGTAAAC  640

seq1  TTTACCACACTGTCATTTTTGCCTCTGTTTTTCCAACTTGAGAAATAAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCACACTGTCATTTTTGCCTCTGTTTTTCCAACTTGAGAAATAAGA  690

seq1  CTGTTCTATGCTCACCACTATGATATTTGAACATGATCTGTAAATGTTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTATGCTCACCACTATGATATTTGAACATGATCTGTAAATGTTGA  740

seq1  TGATGATACAAGTAAAGTGTGAGAAGTACTGGTAAAGGTTAAATATTTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATACAAGTAAAGTGTGAGAAGTACTGGTAAAGGTTAAATATTTTG  790

seq1  AACAAGTAACAGAAAAATGTCACAAACACTTGTGGTTCTTTTATCAGATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTAACAGAAAAATGTCACAAACACTTGTGGTTCTTTTATCAGATA  840

seq1  AGAATTTATATATGGCATAGCCATCCTATATTTTATGTCTAATATCACTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTATATATGGCATAGCCATCCTATATTTTATGTCTAATATCACTT  890

seq1  ATAAATGACTACATAACATGCATGTCCTTTTGGATCTGGGTCACCTCATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGACTACATAACATGCATGTCCTTTTGGATCTGGGTCACCTCATT  940

seq1  CAGGATTATATTCTCAAGTTCCATCAATTTGTCCCCAAAACACTTTATGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTATATTCTCAAGTTCCATCAATTTGTCCCCAAAACACTTTATGT  990

seq1  CTTTGTTTTTTAATAGCTAAATAGAATTC  1027
      |||||||||||||||||||||||||||||
seq2  CTTTGTTTTTTAATAGCTAAATAGAATTC  1019


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