BAC Information

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BAC

Clone NameB6Ng01-244A24
Chromosome1 (Build37)
Map Location 135,428,221 - 135,580,355
singlet/doubletdoublet
Overlap geneSnrpe, Zc3h11a, LOC667118, Lax1
Upstream geneCntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371
Downstream geneAtp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244A24.bB6Ng01-244A24.g
ACCGA053289GA053290
length545616
definitionB6Ng01-244A24.b B6Ng01-244A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,579,806 - 135,580,355)(135,428,221 - 135,428,831)
sequence
cttgtccattgactgaattggaattatatcttcggtgacagttggtaagg
gtgtagactgtttgctggggaccattgatcctgagaatcccccatggtct
gtgttctgactgattctcccactgtttcagggcctgttccttacttccaa
gtagctccatcgttgactctgcctccacccagacatcgagccaaaaatat
ttatgacttcttgccccggcagcagacagagctgggtaaatttctcctaa
tccgtggaattctgatactctaaacctaggctcccaagatgcatctctta
ccactcagatgcaattttatctaactgtccaggctgcaaaacagcactga
gtgctctgaatctccaggtggggggctgggctggacaactctgaacagag
aggagtcagctgggtgtggggtctgctttctcttggctgaaggcagcaga
ggacagccagttacatcataggtggagaagacatgaatagaccatgatgc
cagcattggcagcaatgggatggggacttctccacaggcatgccc
gaattcattgtcatgccactgctttctgatcttagagcttgataacaaat
tagctattgatcttaccgaagatcacttatatgtgatgaactaattcttc
tttcctttcctttcctttcctttccttttctcttcttttctttctttttt
gtttgtttgtttgtttgtttgtttgtttgttttttgagacagagtttctc
tgtgtagccctggctgttctggaactcactttgcagaccaggctggcctt
gaactcagaaatctgcttgcctctgcctcctaagtgctgggattaaaggc
gtgtgccaccactgcccagcttaattcttattttcttcaagatcttttaa
aaaatgtttcctgtggcaaataaacatccctttaaagttatcatactggg
aattcacttcaatttcttagatatataaactttatatatgctagtttttg
tttaaattttggaggttttcctaaaattaaaaaaaaaaaagaggggtgat
ttatttgttgctatttttatgtgtaagggtactgtttatctgtgtaccac
atgcatggatgcagtgtcagcagagaactgaagagggcactgagacccct
tgcaactgagttacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135579806_135580355
seq2: B6Ng01-244A24.b_43_593 (reverse)

seq1  GGGCATGCCTGTGGAGAAGTCCCCATCCC-TTGCTGCCAATGCTGGCATC  49
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGGCATGCCTGTGGAGAAGTCCCCATCCCATTGCTGCCAATGCTGGCATC  50

seq1  ATGGTCTATTCATGTCTTCTCCACCTATGATGTAACTGGCTGTCCTCTGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTATTCATGTCTTCTCCACCTATGATGTAACTGGCTGTCCTCTGC  100

seq1  TGCCTTCAGCCAAGAGAAAGCAGACCCCACACCCAGCTGACTCCTCTCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCAGCCAAGAGAAAGCAGACCCCACACCCAGCTGACTCCTCTCTG  150

seq1  TTCAGAGTTGTCCAGCCCAGCCCCCCACCTGGAGATTCAGAGCACTCAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTTGTCCAGCCCAGCCCCCCACCTGGAGATTCAGAGCACTCAGT  200

seq1  GCTGTTTTGCAGCCTGGACAGTTAGATAAAATTGCATCTGAGTGGTAAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTGCAGCCTGGACAGTTAGATAAAATTGCATCTGAGTGGTAAGA  250

seq1  GATGCATCTTGGGAGCCTAGGTTTAGAGTATCAGAATTCCACGGATTAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATCTTGGGAGCCTAGGTTTAGAGTATCAGAATTCCACGGATTAGG  300

seq1  AGAAATTTACCCAGCTCTGTCTGCTGCCGGGGCAAGAAGTCATAAATATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTACCCAGCTCTGTCTGCTGCCGGGGCAAGAAGTCATAAATATT  350

seq1  TTTGGCTCGATGTCTGGGTGGAGGCAGAGTCAACGATGGAGCTACTTGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCGATGTCTGGGTGGAGGCAGAGTCAACGATGGAGCTACTTGGA  400

seq1  AGTAAGGAACAGGCCCTGAAACAGTGGGAGAATCAGTCAGAACACAGACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGAACAGGCCCTGAAACAGTGGGAGAATCAGTCAGAACACAGACC  450

seq1  ATGGGGGATTCTCAGGATCAATGGTCCCCAGCAAACAGTCTACACCCTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGATTCTCAGGATCAATGGTCCCCAGCAAACAGTCTACACCCTTA  500

seq1  CCAACTGTCACCGAAGATATAATTCCAATTCAGTCAATGGACAAGGAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGTCACCGAAGATATAATTCCAATTCAGTCAATGGACAAGGAATT  550

seq1  C  550
      |
seq2  C  551

seq1: chr1_135428221_135428831
seq2: B6Ng01-244A24.g_73_688

seq1  GAATTCATTGTCATGCCACTGCTTTCTGATCTTAGAGCTTGATAACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTCATGCCACTGCTTTCTGATCTTAGAGCTTGATAACAAAT  50

seq1  TAGCTATTGATCTTACCGAAGATCACTTATATGTGATGAACTAATTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATTGATCTTACCGAAGATCACTTATATGTGATGAACTAATTCTTC  100

seq1  TTTCCTTTCCTTTCCTTTCCTTTCCTTTTCTCTTCTTTTCTTTCTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCCTTTCCTTTCCTTTCCTTTTCTCTTCTTTTCTTTCTTTTTT  150

seq1  GTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGAGACAGAGTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGAGACAGAGTTTCTC  200

seq1  TGTGTAGCCCTGGCTGTTCTGGAACTCACTTTGCAGACCAGGCTGGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCCTGGCTGTTCTGGAACTCACTTTGCAGACCAGGCTGGCCTT  250

seq1  GAACTCAGAAATCTGCTTGCCTCTGCCTCCTAAGTGCTGGGATTAAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAAATCTGCTTGCCTCTGCCTCCTAAGTGCTGGGATTAAAGGC  300

seq1  GTGTGCCACCACTGCCCAGCTTAATTCTTATTTTCTTCAAGATCTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCACCACTGCCCAGCTTAATTCTTATTTTCTTCAAGATCTTTTAA  350

seq1  AAAATGTTTCCTGTGGCAAATAAACATCCCTTTAAAGTTATCATACTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTCCTGTGGCAAATAAACATCCCTTTAAAGTTATCATACTGGG  400

seq1  AATTCAC-TCAATTTCTTAGATATATAAAC-TTATATATGCTAGTTTTTG  448
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  AATTCACTTCAATTTCTTAGATATATAAACTTTATATATGCTAGTTTTTG  450

seq1  TTTAAATTTTGGAGG-TTTCCTAAAATT-AAAAAAAAAAAGAGGGGTGAT  496
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  TTTAAATTTTGGAGGTTTTCCTAAAATTAAAAAAAAAAAAGAGGGGTGAT  500

seq1  TTATTTGTTGCTATTTTTATGTGTAAGGGTACTGTTTATCTGTGTACCAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTGCTATTTTTATGTGTAAGGGTACTGTTTATCTGTGTACCAC  550

seq1  ATGCATGGATGCAGTGTCAGCAGAGAACTGAAGAGGGCACTG-GGTCCCT  595
      |||||||||||||||||||||||||||||||||||||||||| |  ||||
seq2  ATGCATGGATGCAGTGTCAGCAGAGAACTGAAGAGGGCACTGAGACCCCT  600

seq1  TGCAACCGAGTTACAG  611
      |||||| |||||||||
seq2  TGCAACTGAGTTACAG  616