BAC Information

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BAC

Clone NameB6Ng01-244D02
Chromosome9 (Build37)1 (Build37)
Map Location 12,212,935 - 12,214,098144,011,722 - 144,011,777
singlet/doubletsingletsinglet
Overlap geneLOC622505
Upstream geneLOC100039989
Downstream geneLOC100039680, LOC665285, LOC100039729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244D02.bB6Ng01-244D02.g
ACCGA053388GA053389
length1,17398
definitionB6Ng01-244D02.b B6Ng01-244D02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,212,935 - 12,214,098)(144,011,722 - 144,011,777)
sequence
gaattcaaacacatgaaactatggagggagggggagtcaaacctattcaa
accactccaatgataagtatagttacatagaataatatcaagtgaaaaaa
ttaacaaaatattagatatataaataaacataccatttctttgaaagtat
aaaacacaatattttttcagtggaaataaactcatactttctaacatttt
tctcatgaaactaaatatagatcctatgaactagcaagcaggtagtgcat
ctctacagttttgtagaacaaacagagaataaattttcacaatgctattt
ttgttaatggctcttcataaaggctaaggttattacaaaaggcaactcaa
ttaggaagagttagtataatgaagagatgacagattatcaactcttgata
tggaatgttacaaattctaaccacactgctgtgtctgtttgagaaattgt
atgagttgtgctaagtaatatctactgaagtcattgacaaagaagtgagg
gctttggaaaaatatgtagcagggttttatttccacactaatgcgtaaga
tggcttaagggtgaaaaacagaggacagagcataatggaagaattattta
cagactctgaatggtaaaattcaacctcattaaatatatgcattattctg
aaagctatttcttttccacagaatgaaaagaaaagcattttaatatgatt
gtgtacaaaataatttggagtagaaagcataagaacctcataaacttgta
cttgcttttgtaagttaatcatagaccttcaaagataaaaatcacgtgtt
taaatctaagattaaaaagctgtagcaaagtttcccccttgccccagtac
ctgggcctaattgggaccctcagcacccctagcatgcagaacctcctcct
gagatgctggagacacacattccattctgtttacatctgtagcctggaac
agatcctgtgctccaccccacctgcacaaagagacagattgaccccagga
gttttgacaccaccaggctcgcaggtagccaccccccacccaagagcggg
gcctaactgggatccccagggtcttagatgtcagaggaccttctcagcat
gcagaagaatacattcttcctgttccacctccctactatgttcaagagcc
agaatcctgtgtagtaggtcctg

gaattctttgtttagctctgagcaacatttatatatatatatatatatat
atatatatatatatatatatatatatatatatatgtatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_12212935_12214098
seq2: B6Ng01-244D02.b_44_1216

seq1  GAATTCAAACACATGAAACTATGGAGGGAGGGGGAGTCAAACCTATTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACACATGAAACTATGGAGGGAGGGGGAGTCAAACCTATTCAA  50

seq1  ACCACTCCAATGATAAGTATAGTTACATAGAATAATATCAAGTGAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCCAATGATAAGTATAGTTACATAGAATAATATCAAGTGAAAAAA  100

seq1  TTAACAAAATATTAGATATATAAATAAACATACCATTTCTTTGAAAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAATATTAGATATATAAATAAACATACCATTTCTTTGAAAGTAT  150

seq1  AAAACACAATATTTTTTCAGTGGAAATAAACTCATACTTTCTAACATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACAATATTTTTTCAGTGGAAATAAACTCATACTTTCTAACATTTT  200

seq1  TCTCATGAAACTAAATATAGATCCTATGAACTAGCAAGCAGGTAGTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGAAACTAAATATAGATCCTATGAACTAGCAAGCAGGTAGTGCAT  250

seq1  CTCTACAGTTTTGTAGAACAAACAGAGAATAAATTTTCACAATGCTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAGTTTTGTAGAACAAACAGAGAATAAATTTTCACAATGCTATTT  300

seq1  TTGTTAATGGCTCTTCATAAAGGCTAAGGTTATTACAAAAGGCAACTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAATGGCTCTTCATAAAGGCTAAGGTTATTACAAAAGGCAACTCAA  350

seq1  TTAGGAAGAGTTAGTATAATGAAGAGATGACAGATTATCAACTCTTGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGAGTTAGTATAATGAAGAGATGACAGATTATCAACTCTTGATA  400

seq1  TGGAATGTTACAAATTCTAACCACACTGCTGTGTCTGTTTGAGAAATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTTACAAATTCTAACCACACTGCTGTGTCTGTTTGAGAAATTGT  450

seq1  ATGAGTTGTGCTAAGTAATATCTACTGAAGTCATTGACAAAGAAGTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTGTGCTAAGTAATATCTACTGAAGTCATTGACAAAGAAGTGAGG  500

seq1  GCTTTGGAAAAATATGTAGCAGGGTTTTATTTCCACACTAATGCGTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGAAAAATATGTAGCAGGGTTTTATTTCCACACTAATGCGTAAGA  550

seq1  TGGCTTAAGGGTGAAAAACAGAGGACAGAGCATAATGGAAGAATTATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAAGGGTGAAAAACAGAGGACAGAGCATAATGGAAGAATTATTTA  600

seq1  CAGACTCTGAATGGTAAAATTCAACCTCATTAAATATATGCATTATTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCTGAATGGTAAAATTCAACCTCATTAAATATATGCATTATTCTG  650

seq1  AAAGCTATTTCTTTTCCACAGAATGAAAAGAAAAGCATTTTAATATGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTATTTCTTTTCCACAGAATGAAAAGAAAAGCATTTTAATATGATT  700

seq1  GTGTACAAAATAATTTGGAGTAGAAAGCATAAGAACCTCATAAACTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAAAATAATTTGGAGTAGAAAGCATAAGAACCTCATAAACTTGTA  750

seq1  CTTGCTTTTGTAAGTTAATCATAGACCTTCAAAGATAAAAATCAGGTGTT  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTGCTTTTGTAAGTTAATCATAGACCTTCAAAGATAAAAATCACGTGTT  800

seq1  TAAATCTAAGATTAAAAAGCTGTAGCAAAGTTTCCCCCTTGCCCCAGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTAAGATTAAAAAGCTGTAGCAAAGTTTCCCCCTTGCCCCAGTAC  850

seq1  CT-GGCCTAATTGGGACCCTCAGCACCCCTAGCATGCAGAACCTCCTCCT  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTAATTGGGACCCTCAGCACCCCTAGCATGCAGAACCTCCTCCT  900

seq1  GAGATGCTGGAGACACACATTCCATTCTGTTTACATCTGTAGCCTGGAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCTGGAGACACACATTCCATTCTGTTTACATCTGTAGCCTGGAAC  950

seq1  AGATCCTGTGCTCCA-CCCACCTGCACAAAGAGACAGATTGACCCCCAGG  998
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  AGATCCTGTGCTCCACCCCACCTGCACAAAGAGACAGATTGA-CCCCAGG  999

seq1  AGTTTTGACACCACCAGGCTCGCAGGTAAGCCACCCCCACCCAAAGAGC-  1047
      ||||||||||||||||||||||||||| ||||||||||  || |||||| 
seq2  AGTTTTGACACCACCAGGCTCGCAGGT-AGCCACCCCCCACCCAAGAGCG  1048

seq1  GGGCCTAACTGGGATCCCCAGGGTCCTAGATGTCAGAGGACC-TCTCAGC  1096
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  GGGCCTAACTGGGATCCCCAGGGTCTTAGATGTCAGAGGACCTTCTCAGC  1098

seq1  ATGCCAGAG-ATACA-TCTTCCTG-TCCA-CTCCCAACTATGTCCAGGAG  1142
      ||||   || ||||| |||||||| |||| ||||| ||||||| || |||
seq2  ATGCAGAAGAATACATTCTTCCTGTTCCACCTCCCTACTATGTTCAAGAG  1148

seq1  -CAG-ATCCTGTGTAGTA-GTCCTG  1164
       ||| ||||||||||||| ||||||
seq2  CCAGAATCCTGTGTAGTAGGTCCTG  1173


seq1: chr1_144011722_144011777
seq2: B6Ng01-244D02.g_112_161

seq1  ATATATATATACATACATATATACATATATATATATATATATGTATATAT  50
      ||||||||||      ||||||| ||||||||||||||||||||||||||
seq2  ATATATATAT------ATATATATATATATATATATATATATGTATATAT  44

seq1  ATATAT  56
      ||||||
seq2  ATATAT  50


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