BAC Information

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BAC

Clone NameB6Ng01-244E08
Chromosome1 (Build37)
Map Location 74,506,519 - 74,645,070
singlet/doubletdoublet
Overlap geneUsp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25
Upstream geneLOC672208, LOC100043291, Tns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1
Downstream geneStk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244E08.bB6Ng01-244E08.g
ACCGA053446GA053447
length1,171492
definitionB6Ng01-244E08.b B6Ng01-244E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,506,519 - 74,507,706)(74,644,573 - 74,645,070)
sequence
gaattcaccatttgacaggctctcaatggtctagaactatcagaaaattg
gagaatatataatgtatacaattgcatcattaaaggtagatatttaactg
gtaaagctaattactctacactaaaagtgtcatcttattccctcctgaaa
agtaaacaatatttcaaaataatactaaccataccatctctggctctcct
tgctctaattattgaaataaacagctttgccaatcaagtcaagtgtaaca
catgagaagaacttagggggaaaccatcttatcttatttatttttgagca
ataaaataataatagctctcagtttattgagatttcctagatgacaagca
ttgaaagtactactgcccttaatagtcacagcagattttcccacagataa
gctgaactttccaaggtcttaaagccaccaaaaatgcattaaaatatagt
ccgcttcatttcagatcattgatcacaagatatgtaatacagtcagaggg
actaacagctctaccagcagagggcagcctgcaccaagtaaaaacacttc
taatagcggaaagaaaaacaattacacacactgaagactctaggcatatg
ctttgctagtagactcttgaggattttgtatgtaaacttacatgatgtaa
tttataaatccaagagaaatatatcttatgaaattgcatcaattaatttg
gggaattgttccatttattttctgtaatgtctaactctaggcaagaaaca
gtccttccttgttctttttggaaacagagtattatgcagctcacggtggc
ctcaaacttctacatagcctaaaccggtattgaagcatcttctctgcttt
aggctgaaattacaggcatatactacaatacccagcaaggcttggctttt
ttaattactaacctcagtgaaattaaaggatttgaacaaattctcagaat
tattttcactcttacagcttctagactttatgattctacaaaatactgtc
aagtatgagatatctatagcgtggggctcagtagagcaagctgcaggaga
gcacccacagtcagaagttctacgctcacacgtatgatgacgaacacaac
cgaagcgaaggtacctctttttctctgaagctctagagtcatgtaggtta
cctcatatggggcaataattt
agctctgcctgtggaaggaagggggtcgctttaatattgacctctccggt
tttttccaggatctcacaggccctgggccatgtggccaaggaaggactag
gcactgccatgctctatgaactcattgaggtaaagtgtgacggcctggta
aaatgtccttccttccaggcaacattatatctatagccagtacatttagt
gtttgtttgcataaggcctcaattagtctagaaagataactctcatgtat
ctaaaaaagaatatatatatatatatatatatatatatacatacatacat
acatatatatagagggggggggggagacagacagcagagacagagacaga
gagttacagttgagtagctccccttgggttgttggttctaagcatcttga
tgaaaaagtacttctcctctttgaccttgttgtagggtttttgttatttt
atttagttagttcttttctttctctttttgttgtttatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_74506519_74507706
seq2: B6Ng01-244E08.b_48_1218

seq1  GAATTCACCATTTGACAGGCTCTCAATGGTCTAGAACTATCAGAAAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATTTGACAGGCTCTCAATGGTCTAGAACTATCAGAAAATTG  50

seq1  GAGAATATATAATGTATACAATTGCATCATTAAAGGTAGATATTTAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATATAATGTATACAATTGCATCATTAAAGGTAGATATTTAACTG  100

seq1  GTAAAGCTAATTACTCTACACTAAAAGTGTCATCTTATTCCCTCCTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCTAATTACTCTACACTAAAAGTGTCATCTTATTCCCTCCTGAAA  150

seq1  AGTAAACAATATTTCAAAATAATACTAACCATACCATCTCTGGCTCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACAATATTTCAAAATAATACTAACCATACCATCTCTGGCTCTCCT  200

seq1  TGCTCTAATTATTGAAATAAACAGCTTTGCCAATCAAGTCAAGTGTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAATTATTGAAATAAACAGCTTTGCCAATCAAGTCAAGTGTAACA  250

seq1  CATGAGAAGAACTTAGGGGGAAACCATCTTATCTTATTTATTTTTGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAAGAACTTAGGGGGAAACCATCTTATCTTATTTATTTTTGAGCA  300

seq1  ATAAAATAATAATAGCTCTCAGTTTATTGAGATTTCCTAGATGACAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAATAATAGCTCTCAGTTTATTGAGATTTCCTAGATGACAAGCA  350

seq1  TTGAAAGTACTACTGCCCTTAATAGTCACAGCAGATTTTCCCACAGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTACTACTGCCCTTAATAGTCACAGCAGATTTTCCCACAGATAA  400

seq1  GCTGAACTTTCCAAGGTCTTAAAGCCACCAAAAATGCATTAAAATATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACTTTCCAAGGTCTTAAAGCCACCAAAAATGCATTAAAATATAGT  450

seq1  CCGCTTCATTTCAGATCATTGATCACAAGATATGTAATACAGTCAGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTCATTTCAGATCATTGATCACAAGATATGTAATACAGTCAGAGGG  500

seq1  ACTAACAGCTCTACCAGCAGAGGGCAGCCTGCACCAAGTAAAAACACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAGCTCTACCAGCAGAGGGCAGCCTGCACCAAGTAAAAACACTTC  550

seq1  TAATAGCGGAAAGAAAAACAATTACACACACTGAAGACTCTAGGCATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCGGAAAGAAAAACAATTACACACACTGAAGACTCTAGGCATATG  600

seq1  CTTTGCTAGTAGACTCTTGAGGATTTTGTATGTAAACTTACATGATGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTAGTAGACTCTTGAGGATTTTGTATGTAAACTTACATGATGTAA  650

seq1  TTTATAAATCCAAGAGAAATATATCTTATGAAATTGCATCAATTAATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATCCAAGAGAAATATATCTTATGAAATTGCATCAATTAATTTG  700

seq1  GGGAATTGTTCCATTTATTTTCTGTAATGTCTAACTCTAGGCAAGAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTGTTCCATTTATTTTCTGTAATGTCTAACTCTAGGCAAGAAACA  750

seq1  GTCCTTCCTTGTTCTTTTTGGAAACAGAGTATTATGCAGCTCACGGTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCCTTGTTCTTTTTGGAAACAGAGTATTATGCAGCTCACGGTGGC  800

seq1  CTCAAACTTCTACATAGCCTAAACCGGTATTGAAGCATCTTCTCTGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTTCTACATAGCCTAAACCGGTATTGAAGCATCTTCTCTGCTTT  850

seq1  AGGCTGAAATTACAGGCATATACTACAATACCCAGCAAGGCTTGGCTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAATTACAGGCATATACTACAATACCCAGCAAGGCTTGGCTTTT  900

seq1  TTAATTACTAACCTCAGTGAAATT-AAGGATTTGAACAAAATTCTCAGAA  949
      |||||||||||||||||||||||| |||||||||||| |||||||||| |
seq2  TTAATTACTAACCTCAGTGAAATTAAAGGATTTGAAC-AAATTCTCAG-A  948

seq1  ATTATTTTCACTCTTACAGCTTCTAGGACTTTATGATTCTACAAAATTAC  999
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  ATTATTTTCACTCTTACAGCTTCTA-GACTTTATGATTCTACAAAA-TAC  996

seq1  TGTTCAAGTATGAAGAATATCTATAGCGTGGGGCTCCAAGTAGAGCAAGC  1049
      || ||||||||||   ||||||||||||||||||||  ||||||||||| 
seq2  TG-TCAAGTATGA--GATATCTATAGCGTGGGGCTC--AGTAGAGCAAG-  1040

seq1  CTGCAGGAGAGCA-CCACAGTCAGAAGTTCTAAGGCCTCAACACGTATGA  1098
      ||||||||||||| |||||||||||||||||| |  ||| ||||||||||
seq2  CTGCAGGAGAGCACCCACAGTCAGAAGTTCTACG--CTC-ACACGTATGA  1087

seq1  TGACAGACACAAACAGAAAGCAGAGGGGACTTCTTTTTCTCTGAAACACT  1148
      ||||  |||||| |   |||| || || || |||||||||||||| |   
seq2  TGACGAACACAACC--GAAGC-GAAGGTACCTCTTTTTCTCTGAAGC---  1131

seq1  TCTAGGAGTCATGTGAAGTTA-CTCATATTGGGC-ATAATTT  1188
      |||| ||||||||| | |||| ||||||| |||| |||||||
seq2  TCTA-GAGTCATGT-AGGTTACCTCATATGGGGCAATAATTT  1171

seq1: chr1_74644573_74645070
seq2: B6Ng01-244E08.g_64_561 (reverse)

seq1  ATAAATAAACAACAAAAAGAGAAAGAAAAGAACTAACTAAATAAAATAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAACAACAAAAAGAGAAAGAAAAGAACTAACTAAATAAAATAAC  50

seq1  AAAAACCCTACAACAAGGTCAAAGAGGAGAAGTACTTTTTCATCAAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCTACAACAAGGTCAAAGAGGAGAAGTACTTTTTCATCAAGATG  100

seq1  CTTAGAACCAACAACCCAAGGGGAGCTACTCAACTGTAACTCTCTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAACCAACAACCCAAGGGGAGCTACTCAACTGTAACTCTCTGTCTC  150

seq1  TGTCTCTGCTGTCTGTCTCCCCCCCCCCCTCTATATATATGTATGTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGCTGTCTGTCTCCCCCCCCCCCTCTATATATATGTATGTATGT  200

seq1  ATGTATATATATATATATATATATATATATATTCTTTTTTAGATACATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATATATATATATATATATATATATATTCTTTTTTAGATACATGA  250

seq1  GAGTTATCTTTCTAGACTAATTGAGGCCTTATGCAAACAAACACTAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATCTTTCTAGACTAATTGAGGCCTTATGCAAACAAACACTAAATG  300

seq1  TACTGGCTATAGATATAATGTTGCCTGGAAGGAAGGACATTTTACCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCTATAGATATAATGTTGCCTGGAAGGAAGGACATTTTACCAGGC  350

seq1  CGTCACACTTTACCTCAATGAGTTCATAGAGCATGGCAGTGCCTAGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCACACTTTACCTCAATGAGTTCATAGAGCATGGCAGTGCCTAGTCCT  400

seq1  TCCTTGGCCACATGGCCCAGGGCCTGTGAGATCCTGGAAAAAACCGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGCCACATGGCCCAGGGCCTGTGAGATCCTGGAAAAAACCGGAGA  450

seq1  GGTCAATATTAAAGCGACCCCCTTCCTTCCACAGGCAGAGCTGAATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATATTAAAGCGACCCCCTTCCTTCCACAGGCAGAGCTGAATTC  498