BAC Information

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BAC

Clone NameB6Ng01-244L05
Chromosome1 (Build37)
Map Location 162,365,096 - 162,497,836
singlet/doubletdoublet
Overlap geneRabgap1l
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp
Downstream geneGpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244L05.bB6Ng01-244L05.g
ACCGA053770GA053771
length9851,073
definitionB6Ng01-244L05.b B6Ng01-244L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,365,096 - 162,365,651)(162,496,773 - 162,497,836)
sequence
gaattccttcatgattttccctgtcagggtaactctgtcatacaggcaca
aaagtggttacagtattgggattgggttacatctaattgagctgttggct
aaaggggtcccatgggaaacccccaacaagacaggctattgccaagacaa
taataagttgctctctacaaactgacagccaggtctcattgtgaaaacat
ctgtgttgaacatggagaagttgagtggtgcctacagagagccttcaccc
cgatgttctagtgtccttggtacaggaaggtactctgtgttatcaaaata
gaagcataaataccaacttggtcacaaaccctttgatcagaggtttactg
cctgataaaatcctgttaatactgtcctgcctgcaaggtatgctagggca
atgggggctgtaagtttgtgggagtaaccaaccaatataagatttgacta
aaggctcactccacaagatggatcccatacctgacactgcttgagtgacc
aataacctgaaattagatagcccaggaacctagggtaagatgaaatacca
ctcttcttaaaaaaaaaaagtagtagcaataaaatgagtcctagtgacat
tttgctatactcatacatcagtgtcttccttggtcatcatcaaagcagct
cccccctgcaggaaatgggaacaaatataaagacccacagcagacatcat
acagaaagaattcttggaacatttagccctaactgggatgtgactatcaa
atccttcccctcagggatcagggacactgaagaagaggaggtagaaagga
tataagaaccagaggggatgaaggacatcaagagtttctgtgccctccct
tggctattttccttctgtttgttttattcaattctgatgtgatagggttt
tttaattttattttattactatcctttagaagcttgtttgttttctaatg
agagacaagaaaagggaggggcaaataggagaaac
gaattctctagtcctcctaccttttccatagcaaggaaagtatagtgttt
taagagaaaactagagattgcttgtagagatgagttgagtaaaattatat
tttctgtttttccctgtttatacccactaggttgcttgctaataaggagc
ccagtctagtttgtgacactctgctctgttgttatccctgggaattgatc
tttaaattcaaattcccatccctcccacctaacttaccttctttttcccc
tttttcattttttgctttttatttttatagaaatgttgcttcagaaggaa
actctggggtattttaatagaggatagagaataaattatatagagtctcc
tcacctgatagaattaggtgagaaaatagccactgattatgggttccttt
tgttctactcctatgaatctggagttttgaaatgtggggattttcagatg
tagctatttatatcttaaacattttcatcttatagcatattcttcatgaa
aatctttataaataaaattttatccatatgtagtagttttgtaattttaa
aagaggaatactaagtcagattgtgattattttccattttgctaattttt
tcccaaaaagactgaatttgtttaatcctcagacaaaaaaaccaacaaca
acaacaacaaaaaaaaaaacaaaaaacaaaaacaaaaacaaaaaacctgc
gtgaagctctgaggtcctgcagaaactctgcccctgcagcttctcagacc
cactcagttaaggctcctgagttttcagtgcatatcttcccagctcctac
aagaaatttctttgtcatatgttccttttccaacttaaaaaaaaaatagc
atgctacaaatatttagcttttcagaatttgttgaactgtaatcatctcc
ccactttagttgggttagctttctgggttactcagtgggtggctacttgg
tgattaaagccaaggcattcttatgagacatcaaagctgggcggaatgct
gttctcaggtgtattaggttcttcagcgggtgggcaagtccattgtatca
ggcgggtggctacactttgagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162365096_162365651
seq2: B6Ng01-244L05.b_42_597

seq1  GAATTCCTTCATGATTTTCCCTGTCAGGGTAACTCTGTCATACAGGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCATGATTTTCCCTGTCAGGGTAACTCTGTCATACAGGCACA  50

seq1  AAAGTGGTTACAGTATTGGGATTGGGTTACATCTAATTGAGCTGTTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGTTACAGTATTGGGATTGGGTTACATCTAATTGAGCTGTTGGCT  100

seq1  AAAGGGGTCCCATGGGAAACCCCCAACAAGACAGGCTATTGCCAAGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGTCCCATGGGAAACCCCCAACAAGACAGGCTATTGCCAAGACAA  150

seq1  TAATAAGTTGCTCTCTACAAACTGACAGCCAGGTCTCATTGTGAAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTTGCTCTCTACAAACTGACAGCCAGGTCTCATTGTGAAAACAT  200

seq1  CTGTGTTGAACATGGAGAAGTTGAGTGGTGCCTACAGAGAGCCTTCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTGAACATGGAGAAGTTGAGTGGTGCCTACAGAGAGCCTTCACCC  250

seq1  CGATGTTCTAGTGTCCTTGGTACAGGAAGGTACTCTGTGTTATCAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTTCTAGTGTCCTTGGTACAGGAAGGTACTCTGTGTTATCAAAATA  300

seq1  GAAGCATAAATACCAACTTGGTCACAAACCCTTTGATCAGAGGTTTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATAAATACCAACTTGGTCACAAACCCTTTGATCAGAGGTTTACTG  350

seq1  CCTGATAAAATCCTGTTAATACTGTCCTGCCTGCAAGGTATGCTAGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATAAAATCCTGTTAATACTGTCCTGCCTGCAAGGTATGCTAGGGCA  400

seq1  ATGGGGGCTGTAAGTTTGTGGGAGTAACCAACCAATATAAGATTTGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGCTGTAAGTTTGTGGGAGTAACCAACCAATATAAGATTTGACTA  450

seq1  AAGGCTCACTCCACAAGATGGATCCCATACCTGACACTGCTTGAGTGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCACTCCACAAGATGGATCCCATACCTGACACTGCTTGAGTGACC  500

seq1  AATAACCTGAAATTAGATAGCCCAGGAACCTAGGGTAAGATGAAATACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTGAAATTAGATAGCCCAGGAACCTAGGGTAAGATGAAATACCA  550

seq1  CTCTTC  556
      ||||||
seq2  CTCTTC  556

seq1: chr1_162496773_162497836
seq2: B6Ng01-244L05.g_67_1139 (reverse)

seq1  TTCTCAAAGTGTAG-CACACGCCTGATACAATGAACTTGCC--ACCGCTG  47
      |||||||||||||| ||| |||||||||||||| |||||||   ||||||
seq2  TTCTCAAAGTGTAGCCACCCGCCTGATACAATGGACTTGCCCACCCGCTG  50

seq1  AAG-ACCTAATTAACACTGGAAGAACAGCATTC--GCCAGCTTTGATGTC  94
      ||| |||||||  ||||  | ||||||||||||   ||||||||||||||
seq2  AAGAACCTAAT--ACACCTG-AGAACAGCATTCCGCCCAGCTTTGATGTC  97

seq1  TCATAAGAATG-CTTGGCTTTAATCACCAAGTAGC--ACCACTGAGTAA-  140
      ||||||||||| |||||||||||||||||||||||   ||||||||||| 
seq2  TCATAAGAATGCCTTGGCTTTAATCACCAAGTAGCCACCCACTGAGTAAC  147

seq1  CCAGAAAGCTAA-CCAACTAAAGTGGGGAGATGATTACAGTTCAACAAAT  189
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGCTAACCCAACTAAAGTGGGGAGATGATTACAGTTCAACAAAT  197

seq1  TCTGAAAAGCTAAATATTTGTAGCATGCTA-TTTTTTTTTAAGTTGGAAA  238
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTGAAAAGCTAAATATTTGTAGCATGCTATTTTTTTTTTAAGTTGGAAA  247

seq1  AGGAACATATGACAAAGAAATTTCTTGTAGGAGCTGGGAAGATATGCACT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACATATGACAAAGAAATTTCTTGTAGGAGCTGGGAAGATATGCACT  297

seq1  GAAAACTCAGGAGCCTTAACTGAGTGGGTCTGAGAAGCTGCAGGGGCAGA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCAGGAGCCTTAACTGAGTGGGTCTGAGAAGCTGCAGGGGCAGA  347

seq1  GTTTCTGCAGGACCTCAGAGCTTCACGCAGGTTTTTTGTTTTTGTTTTTG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCAGGACCTCAGAGCTTCACGCAGGTTTTTTGTTTTTGTTTTTG  397

seq1  TTTTTTGTTTTTTTTTTTGTTGTTGTTGTTGTTGGTTTTTTTGTCTGAGG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTTTTTTTGTTGTTGTTGTTGTTGGTTTTTTTGTCTGAGG  447

seq1  ATTAAACAAATTCAGTCTTTTTGGGAAAAAATTAGCAAAATGGAAAATAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACAAATTCAGTCTTTTTGGGAAAAAATTAGCAAAATGGAAAATAA  497

seq1  TCACAATCTGACTTAGTATTCCTCTTTTAAAATTACAAAACTACTACATA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCTGACTTAGTATTCCTCTTTTAAAATTACAAAACTACTACATA  547

seq1  TGGATAAAATTTTATTTATAAAGATTTTCATGAAGAATATGCTATAAGAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAAATTTTATTTATAAAGATTTTCATGAAGAATATGCTATAAGAT  597

seq1  GAAAATGTTTAAGATATAAATAGCTACATCTGAAAATCCCCACATTTCAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTTAAGATATAAATAGCTACATCTGAAAATCCCCACATTTCAA  647

seq1  AACTCCAGATTCATAGGAGTAGAACAAAAGGAACCCATAATCAGTGGCTA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGATTCATAGGAGTAGAACAAAAGGAACCCATAATCAGTGGCTA  697

seq1  TTTTCTCACCTAATTCTATCAGGTGAGGAGACTCTATATAATTTATTCTC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCACCTAATTCTATCAGGTGAGGAGACTCTATATAATTTATTCTC  747

seq1  TATCCTCTATTAAAATACCCCAGAGTTTCCTTCTGAAGCAACATTTCTAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCTATTAAAATACCCCAGAGTTTCCTTCTGAAGCAACATTTCTAT  797

seq1  AAAAATAAAAAGCAAAAAATGAAAAAGGGGAAAAAGAAGGTAAGTTAGGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAAAGCAAAAAATGAAAAAGGGGAAAAAGAAGGTAAGTTAGGT  847

seq1  GGGAGGGATGGGAATTTGAATTTAAAGATCAATTCCCAGGGATAACAACA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGATGGGAATTTGAATTTAAAGATCAATTCCCAGGGATAACAACA  897

seq1  GAGCAGAGTGTCACAAACTAGACTGGGCTCCTTATTAGCAAGCAACCTAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGTGTCACAAACTAGACTGGGCTCCTTATTAGCAAGCAACCTAG  947

seq1  TGGGTATAAACAGGGAAAAACAGAAAATATAATTTTACTCAACTCATCTC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATAAACAGGGAAAAACAGAAAATATAATTTTACTCAACTCATCTC  997

seq1  TACAAGCAATCTCTAGTTTTCTCTTAAAACACTATACTTTCCTTGCTATG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCAATCTCTAGTTTTCTCTTAAAACACTATACTTTCCTTGCTATG  1047

seq1  GAAAAGGTAGGAGGACTAGAGAATTC  1064
      ||||||||||||||||||||||||||
seq2  GAAAAGGTAGGAGGACTAGAGAATTC  1073