BAC Information

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BAC

Clone NameB6Ng01-245I01
Chromosome1 (Build37)
Map Location 72,537,306 - 72,720,881
singlet/doubletdoublet
Overlap geneMarch4, Smarcal1, Ankar
Upstream geneLOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5
Downstream geneRpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245I01.bB6Ng01-245I01.g
ACCGA054367GA054368
length1,1851,030
definitionB6Ng01-245I01.b B6Ng01-245I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,719,703 - 72,720,881)(72,537,306 - 72,538,329)
sequence
gaattcagagaataagaatctaaaggaagacaaaggggtagtgtaaatta
gagttctttcagcaatacaacaaaaagaaatgtaatgctataccagtgtt
gactggtacaatgtgtccttgatttcaggaatcagtgcactccgctgttg
ctggctgccacttcgggagccctagacactattcagtacctgttttctct
tggtgcgaactggagaaaaacagacacaaagggaaacaacattatccacc
tgtcggtgctggcttttcacacagaggtgctcaagtacataatagagctg
aatatccctgagcttccagtttgggaaactctggtgggtaagtatagaac
atgagatttcactgtaaggaaatattctgattagtctataacatgatttt
ccatgtgcaaaggtgggataaataaaatagaatatttatatttttaaaat
taaagatcatgaaataaatttatgcattgaaaccagcaatagtacagtac
tatatttttgtgtgcaaaagtagtttgatttctaacttaaagatctgtgg
ccaaaatgaactatatcttacacaatgatatttactcttgtttcccaaca
ttcttagaaggcagaacataattttctccattaataaactgaattccaaa
agaaaaagaaaggaagaaggaaagagaggaaattcaagcctaagtagcaa
acgttcttttctgcttattccttactcctcattttagaggcaattttaga
aaagttttccttcacattttgatggatgttctatacaaaattttgtgttc
aatttagccagaaaaataagggttgtacagtcaattgaatgtacatgtca
aaatgtgctcctcccccaagccacattataattacataaagatcaaacaa
tgaatcagcagcagcagtcaagattcaagagaacaggagtgacggaatct
aggcagccacctcttagacttagcattccagagataccagccatcattag
gaaggctgagactttctcaaaacaacatacgtcaacagtcctccaaggcg
gagaacaggcagtgccaggctcttcccacagaagtccagcaagaaagcct
agccagcttgcctgaggcctgcttttctccttggtgactgagtggaaagg
accaagggagcaaagggtgtttcctgagagtggag
gaattctcagccgagagtgccagctggctttctaggaacagtgtttgtgg
ttataaaaggaaacatctttgaagggaaggtggccactctcctgggccaa
gagtcttagttggggaggaaaagagaataagggaggagacatgcctccaa
atcaatacacaaagctaaggatggtgcttgaggcagaaattctccaaggc
tcagcatgccttgccccaccccaggaactcccatgctgcagatctgggac
attgcacaaaaagtgcatttacatgaaaagcgcagtgtggcctgaaggca
agtggtctgggtgccctgctctcagaaacccaccctaaaggctgagaatg
ggcgtgtttaagaacccaattcctggacatatcagaggaacctaagtaga
gggtcagagatgggttgcctggagggacagagaagggacagagaacttct
gaagcacggggcagctaggaagggcttccgggtccaagcagtacaagcct
gctgtgggtgtctccctgtagccctcagctttctcattgctgtgctgaaa
tatctgaggagcaggtcgtttgtaaagaagagagattcgtttgggttcag
aattctggaggcgaaagttggaggagccatatttgctgatggcctccttt
ctggcagagtcccaaggtgacacagggaatcttgaagtgacaggaagccc
cccttacccctgatttaaagtcactaggattcaatctcaggcgttctgtc
caatttgcctaatccaaactgaatgcatttcccaaaggctcccgtctcta
cacatcagattaagcctcacaacaaagatcaaactccagcatgagtagga
taaaccgcacttaagatgaatcacattctccattctttaagccacagtct
ccaatttgtattcttttagaagatgtgccctctgatgatattgatatttt
agctggccaactaccttacagaagattaaatgtttaacagggtattttct
ctctctctctctctctctctctcttctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_72719703_72720881
seq2: B6Ng01-245I01.b_44_1228 (reverse)

seq1  CTCCACTCT--GGAACACCCCTTTGCTCCCTGGGGCCTTCCCACTTCTGT  48
      |||||||||  ||||   ||||||||||||| || |||| |||| || | 
seq2  CTCCACTCTCAGGAAACACCCTTTGCTCCCTTGGTCCTTTCCAC-TCAG-  48

seq1  TCACCAAGGAGAAAGGCA-GCCTCAG--CAGCT-GCTAGCCTTTCTGGCT  94
      |||||||||||||| ||| |||||||   |||| ||||| |||||| |||
seq2  TCACCAAGGAGAAAAGCAGGCCTCAGGCAAGCTGGCTAGGCTTTCTTGCT  98

seq1  GGGC-TCTGTGG--AGAGCCCTGGCACTGCCTGTTCTCCGGCCTTTGGAG  141
      || | |||||||  |||| |||||||||||||||||||||  | ||||||
seq2  GGACTTCTGTGGGAAGAG-CCTGGCACTGCCTGTTCTCCG--CCTTGGAG  145

seq1  GACTG-TGACGTATGT--GTTTGAGAAGTTCTCAGCTTTCCTAATGATGG  188
      ||||| ||||||||||   ||||||||  ||||||| |||||||||||||
seq2  GACTGTTGACGTATGTTGTTTTGAGAAAGTCTCAGCCTTCCTAATGATGG  195

seq1  CTTGGTATTCTCTGGAATGCTAAGTCTAAGAGGTGGCTGCCT-GGTTCCG  237
      | ||||| |||||||||||||||||||||||||||||||||| | |||||
seq2  C-TGGTA-TCTCTGGAATGCTAAGTCTAAGAGGTGGCTGCCTAGATTCCG  243

seq1  TCACTCCTGTTCTCTTGAATCTTGACTGCTGCTGCTGATTCATTGTTTGA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCTGTTCTCTTGAATCTTGACTGCTGCTGCTGATTCATTGTTTGA  293

seq1  TCTTTATGTAATTATAATGTGGCTTGGGGGAGGAGCACATTTTGACATGT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGTAATTATAATGTGGCTTGGGGGAGGAGCACATTTTGACATGT  343

seq1  ACATTCAATTGACTGTACAACCCTTATTTTTCTGGCTAAATTGAACACAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAATTGACTGTACAACCCTTATTTTTCTGGCTAAATTGAACACAA  393

seq1  AATTTTGTATAGAACATCCATCAAAATGTGAAGGAAAACTTTTCTAAAAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTATAGAACATCCATCAAAATGTGAAGGAAAACTTTTCTAAAAT  443

seq1  TGCCTCTAAAATGAGGAGTAAGGAATAAGCAGAAAAGAACGTTTGCTACT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTAAAATGAGGAGTAAGGAATAAGCAGAAAAGAACGTTTGCTACT  493

seq1  TAGGCTTGAATTTCCTCTCTTTCCTTCTTCCTTTCTTTTTCTTTTGGAAT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTGAATTTCCTCTCTTTCCTTCTTCCTTTCTTTTTCTTTTGGAAT  543

seq1  TCAGTTTATTAATGGAGAAAATTATGTTCTGCCTTCTAAGAATGTTGGGA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTATTAATGGAGAAAATTATGTTCTGCCTTCTAAGAATGTTGGGA  593

seq1  AACAAGAGTAAATATCATTGTGTAAGATATAGTTCATTTTGGCCACAGAT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGTAAATATCATTGTGTAAGATATAGTTCATTTTGGCCACAGAT  643

seq1  CTTTAAGTTAGAAATCAAACTACTTTTGCACACAAAAATATAGTACTGTA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTTAGAAATCAAACTACTTTTGCACACAAAAATATAGTACTGTA  693

seq1  CTATTGCTGGTTTCAATGCATAAATTTATTTCATGATCTTTAATTTTAAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCTGGTTTCAATGCATAAATTTATTTCATGATCTTTAATTTTAAA  743

seq1  AATATAAATATTCTATTTTATTTATCCCACCTTTGCACATGGAAAATCAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAATATTCTATTTTATTTATCCCACCTTTGCACATGGAAAATCAT  793

seq1  GTTATAGACTAATCAGAATATTTCCTTACAGTGAAATCTCATGTTCTATA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGACTAATCAGAATATTTCCTTACAGTGAAATCTCATGTTCTATA  843

seq1  CTTACCCACCAGAGTTTCCCAAACTGGAAGCTCAGGGATATTCAGCTCTA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCACCAGAGTTTCCCAAACTGGAAGCTCAGGGATATTCAGCTCTA  893

seq1  TTATGTACTTGAGCACCTCTGTGTGAAAAGCCAGCACCGACAGGTGGATA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACTTGAGCACCTCTGTGTGAAAAGCCAGCACCGACAGGTGGATA  943

seq1  ATGTTGTTTCCCTTTGTGTCTGTTTTTCTCCAGTTCGCACCAAGAGAAAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTTCCCTTTGTGTCTGTTTTTCTCCAGTTCGCACCAAGAGAAAA  993

seq1  CAGGTACTGAATAGTGTCTAGGGCTCCCGAAGTGGCAGCCAGCAACAGCG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACTGAATAGTGTCTAGGGCTCCCGAAGTGGCAGCCAGCAACAGCG  1043

seq1  GAGTGCACTGATTCCTGAAATCAAGGACACATTGTACCAGTCAACACTGG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCACTGATTCCTGAAATCAAGGACACATTGTACCAGTCAACACTGG  1093

seq1  TATAGCATTACATTTCTTTTTGTTGTATTGCTGAAAGAACTCTAATTTAC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATTACATTTCTTTTTGTTGTATTGCTGAAAGAACTCTAATTTAC  1143

seq1  ACTACCCCTTTGTCTTCCTTTAGATTCTTATTCTCTGAATTC  1179
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCCTTTGTCTTCCTTTAGATTCTTATTCTCTGAATTC  1185

seq1: chr1_72537306_72538329
seq2: B6Ng01-245I01.g_66_1089

seq1  GAATTCTCAGCCGAGAGTGCCAGCTGGCTTTCTAGGAACAGTGTTTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCCGAGAGTGCCAGCTGGCTTTCTAGGAACAGTGTTTGTGG  50

seq1  TTATAAAAGGAAACATCTTTGAAGGGAAGGTGGCCACTCTCCTGGGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAGGAAACATCTTTGAAGGGAAGGTGGCCACTCTCCTGGGCCAA  100

seq1  GAGTCTTAGTTGGGGAGGAAAAGAGAATAAGGGAGGAGACATGCCTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTAGTTGGGGAGGAAAAGAGAATAAGGGAGGAGACATGCCTCCAA  150

seq1  ATCAATACACAAAGCTAAGGATGGTGCTTGAGGCAGAAATTCTCCAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATACACAAAGCTAAGGATGGTGCTTGAGGCAGAAATTCTCCAAGGC  200

seq1  TCAGCATGCCTTGCCCCACCCCAGGAACTCCCATGCTGCAGATCTGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGCCTTGCCCCACCCCAGGAACTCCCATGCTGCAGATCTGGGAC  250

seq1  ATTGCACAAAAAGTGCATTTACATGAAAAGCGCAGTGTGGCCTGAAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACAAAAAGTGCATTTACATGAAAAGCGCAGTGTGGCCTGAAGGCA  300

seq1  AGTGGTCTGGGTGCCCTGCTCTCAGAAACCCACCCTAAAGGCTGAGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCTGGGTGCCCTGCTCTCAGAAACCCACCCTAAAGGCTGAGAATG  350

seq1  GGCGTGTTTAAGAACCCAATTCCTGGACATATCAGAGGAACCTAAGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGTTTAAGAACCCAATTCCTGGACATATCAGAGGAACCTAAGTAGA  400

seq1  GGGTCAGAGATGGGTTGCCTGGAGGGACAGAGAAGGGACAGAGAACTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGAGATGGGTTGCCTGGAGGGACAGAGAAGGGACAGAGAACTTCT  450

seq1  GAAGCACGGGGCAGCTAGGAAGGGCTTCCGGGTCCAAGCAGTACAAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACGGGGCAGCTAGGAAGGGCTTCCGGGTCCAAGCAGTACAAGCCT  500

seq1  GCTGTGGGTGTCTCCCTGTAGCCCTCAGCTTTCTCATTGCTGTGCTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGGTGTCTCCCTGTAGCCCTCAGCTTTCTCATTGCTGTGCTGAAA  550

seq1  TATCTGAGGAGCAGGTCGTTTGTAAAGAAGAGAGATTCGTTTGGGTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGGAGCAGGTCGTTTGTAAAGAAGAGAGATTCGTTTGGGTTCAG  600

seq1  AATTCTGGAGGCGAAAGTTGGAGGAGCCATATTTGCTGATGGCCTCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGAGGCGAAAGTTGGAGGAGCCATATTTGCTGATGGCCTCCTTT  650

seq1  CTGGCAGAGTCCCAAGGTGACACAGGGAATCTTGAAGTGACAGGAAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAGTCCCAAGGTGACACAGGGAATCTTGAAGTGACAGGAAGCCC  700

seq1  CCCTTACCCCTGATTTAAAGTCACTAGGATTCAATCTCAGGCGTTCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACCCCTGATTTAAAGTCACTAGGATTCAATCTCAGGCGTTCTGTC  750

seq1  CAATTTGCCTAATCCAAACTGAATGCATTTCCC-AAGGCTCCCGTCTCTA  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAATTTGCCTAATCCAAACTGAATGCATTTCCCAAAGGCTCCCGTCTCTA  800

seq1  CACATCAGATTAAGCCTCACAACAAAGATCAAACTCCAGCATGAGTAGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGATTAAGCCTCACAACAAAGATCAAACTCCAGCATGAGTAGGA  850

seq1  TAAACCGCACTTAAGATGAATCACATTCTCCATTCTTTAAGCCACAGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCGCACTTAAGATGAATCACATTCTCCATTCTTTAAGCCACAGTCT  900

seq1  CCAATTTGTATTCTTTTAGAAGATGTGCCCTCTGATGATATTGATATTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTGTATTCTTTTAGAAGATGTGCCCTCTGATGATATTGATATTTT  950

seq1  AGCTGGCCAACTACCTTACAGAAGATTAAATGTTTAACAGTGTTATTTTC  999
      |||||||||||||||||||||||||||||||||||||||| | |||||||
seq2  AGCTGGCCAACTACCTTACAGAAGATTAAATGTTTAACAG-GGTATTTTC  999

seq1  TCTCTCTCTCTCTCTCTCTCTCTCT  1024
      |||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCT  1024