BAC Information

Click to search

BAC

Clone NameB6Ng01-245J14
Chromosome1 (Build37)
Map Location 173,177,770 - 173,288,959
singlet/doubletdoublet
Overlap geneAdamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik
Upstream geneSh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2
Downstream genePvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245J14.bB6Ng01-245J14.g
ACCGA054441GA054442
length1,152963
definitionB6Ng01-245J14.b B6Ng01-245J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,287,820 - 173,288,959)(173,177,770 - 173,178,730)
sequence
gaattcttcatctaaagaacagcagggaggcactctgtgttgtggcaaac
ctacaaagcgatctcatcagagctattgccctacttcaaatacttattaa
atttcaatccgagagttttgtctctgaatcctttagaagatttatacatt
ttacttatataagtgccctatttgcatgtacacctttgtgccagaagagg
gcatcagaccccattatagatggttgtgagccaccatgtggttgttgggg
ataataaaacagatgccccctggaagagcagacagagctcttcactgttg
agccatctgagccatctctccagccctctgaatccgttttagaagagcat
caaataaacagattactttatttgcaaaggaaagaccgaactgaggttcc
tttctgatagtgagccattaacctggtagaaacaatgcaaatcatatttt
tttgttttgtttgagacagggtctcactgtgtctatatatagccttggat
tactgggaactcgatttgtagaccaggctggcctggaactccgagatctg
cctcttgttgtcacccaagcactaagattattaaaggcatgtgtggcacc
acacccagctctatgaggtcggtgtagccctaaatgagataaaggttcag
gctatagctaagtatttgaccaaaacatttaatcaacaacaacaacaaaa
acaaaatattacaatagcagagaaataataataacgacaataaaaagaaa
ttacaagtgggaatcagggtaaaaaaaaaaaaacccgcagaggccttagc
tcctaagagaccaacacccctgctgagctggccttagccccagccccttc
tgagttttccttggctgctggcttctcatcttccccatgaagacgaatgt
tgtgcttttccggaattcgttcagttctttgccctttgcctgaagctgct
gtgacagtgtctcaatgattcttctgtatctaagaagcaaaagaagagga
tggaagaaggagtgcaagttctcccttcctctgccccggaactgtgctac
aagtttgaagcagtgaaaaacaagaacacagtggacttaataaggggaac
atcctgaaagctacttaattccattattctttgataatggttataaaagc
at
gaattcacagccaaggccacgagcggtggtggagcaagggggcacttggt
gcaaagataaggaagcagcaatttacaaatgggaggggaaatgctctgac
agtgactcttcaatccctgcgatgcccaagtcacagactcagggagcacc
cttagcaatacctagtaacccgcctccatcctggacggtcttacgtgcca
cagtcttcctcagacgtatctaataacatagacatgtaataattccagga
ctctgagcctaattttgtatggacaaagagttttcctgccctggagactg
atttttgtctttttgtctccaagcccggctccagctgggccacccactct
ttgaggttctccaattttctcattggaaagagacctcctccacatctccc
ccagacagggtccctgggacataggccaccagcggtgcagctgggtggag
cagacagaccaggggagtggcaccgagcattctttgttgcagaggaagag
gagaaagccagatttctaggctaaaaattgacctaatgggaagcatacca
aagggtggggccagagatccgttggctgtgggaactgaccaagacctggt
gtagacaaggtggtccccagaaagtcaaggcagaggcttggtccccttac
cctctacagccacctctccttttctgggcctttcttcctgagatatagtt
taaacacaaaatgtggtgatgatgggaggggggggttcctcatttttgtg
ttaatccatcctatgtgaagtcaagacagactctagctgcttagccctgg
gggtagttcaagcaagaactgggatgagaactcttggggggctttcctaa
ggacactgcatctttgtgccttctccttctggcagcacccccctccccac
gtgctgtaagctgccactctgtggccctttgtccttcactgctaagtcac
actctttgttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173287820_173288959
seq2: B6Ng01-245J14.b_47_1198 (reverse)

seq1  ATGCTTTTATAA-CATTATCAAAGAATAATGAAAATAAGTAGC--TCAGA  47
      |||||||||||| |||||||||||||||||| || ||||||||  |||| 
seq2  ATGCTTTTATAACCATTATCAAAGAATAATGGAATTAAGTAGCTTTCAGG  50

seq1  TGGTTCCCCTTTATAAG-CCACTGTGTTCTTG--TCTCACTGCCTCCAAC  94
        |||||||||  |||| ||||||||||||||  | ||||||| || |||
seq2  ATGTTCCCCTTATTAAGTCCACTGTGTTCTTGTTTTTCACTGCTTCAAAC  100

seq1  -TGTAGCACAG-TCCGGGGCAGAGG-AGGGAG-ACCTGCACTCCTTC-TC  139
       |||||||||| ||||||||||||| |||||| || ||||||||||| ||
seq2  TTGTAGCACAGTTCCGGGGCAGAGGAAGGGAGAACTTGCACTCCTTCTTC  150

seq1  CATCCTC-TCTTTTGCCTCTTAGATACAGAAG-ATCATTGAGACACTGTC  187
      ||||||| |||||||| ||||||||||||||| |||||||||||||||||
seq2  CATCCTCTTCTTTTGCTTCTTAGATACAGAAGAATCATTGAGACACTGTC  200

seq1  ACAGCAGCTTCAGGCAAAGGGCAAAGAACTGAACGAATTCCGGGAAAAGC  237
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACAGCAGCTTCAGGCAAAGGGCAAAGAACTGAACGAATTCC-GGAAAAGC  249

seq1  ACAACATTCGTC-TCATGGGGGAAGATGAGAAGCCAGCAGCCAAGGAAAA  286
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  ACAACATTCGTCTTCAT-GGGGAAGATGAGAAGCCAGCAGCCAAGGAAAA  298

seq1  CTCAGAAGGGGCTGGGGCTAAGGCCAGCTCAGCAGGGGTGTTGGTCTCTT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGGGGCTGGGGCTAAGGCCAGCTCAGCAGGGGTGTTGGTCTCTT  348

seq1  AGGAGCTAAGGCCTCTGCGGGTTTTTTTTTTTTTACCCTGATTCCCACTT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTAAGGCCTCTGCGGGTTTTTTTTTTTTTACCCTGATTCCCACTT  398

seq1  GTAATTTCTTTTTATTGTCGTTATTATTATTTCTCTGCTATTGTAATATT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTCTTTTTATTGTCGTTATTATTATTTCTCTGCTATTGTAATATT  448

seq1  TTGTTTTTGTTGTTGTTGTTGATTAAATGTTTTGGTCAAATACTTAGCTA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTTGTTGTTGTTGATTAAATGTTTTGGTCAAATACTTAGCTA  498

seq1  TAGCCTGAACCTTTATCTCATTTAGGGCTACACCGACCTCATAGAGCTGG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGAACCTTTATCTCATTTAGGGCTACACCGACCTCATAGAGCTGG  548

seq1  GTGTGGTGCCACACATGCCTTTAATAATCTTAGTGCTTGGGTGACAACAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTGCCACACATGCCTTTAATAATCTTAGTGCTTGGGTGACAACAA  598

seq1  GAGGCAGATCTCGGAGTTCCAGGCCAGCCTGGTCTACAAATCGAGTTCCC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGATCTCGGAGTTCCAGGCCAGCCTGGTCTACAAATCGAGTTCCC  648

seq1  AGTAATCCAAGGCTATATATAGACACAGTGAGACCCTGTCTCAAACAAAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCCAAGGCTATATATAGACACAGTGAGACCCTGTCTCAAACAAAA  698

seq1  CAAAAAAATATGATTTGCATTGTTTCTACCAGGTTAATGGCTCACTATCA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAATATGATTTGCATTGTTTCTACCAGGTTAATGGCTCACTATCA  748

seq1  GAAAGGAACCTCAGTTCGGTCTTTCCTTTGCAAATAAAGTAATCTGTTTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAACCTCAGTTCGGTCTTTCCTTTGCAAATAAAGTAATCTGTTTA  798

seq1  TTTGATGCTCTTCTAAAACGGATTCAGAGGGCTGGAGAGATGGCTCAGAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGCTCTTCTAAAACGGATTCAGAGGGCTGGAGAGATGGCTCAGAT  848

seq1  GGCTCAACAGTGAAGAGCTCTGTCTGCTCTTCCAGGGGGCATCTGTTTTA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAACAGTGAAGAGCTCTGTCTGCTCTTCCAGGGGGCATCTGTTTTA  898

seq1  TTATCCCCAACAACCACATGGTGGCTCACAACCATCTATAATGGGGTCTG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCCAACAACCACATGGTGGCTCACAACCATCTATAATGGGGTCTG  948

seq1  ATGCCCTCTTCTGGCACAAAGGTGTACATGCAAATAGGGCACTTATATAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTCTTCTGGCACAAAGGTGTACATGCAAATAGGGCACTTATATAA  998

seq1  GTAAAATGTATAAATCTTCTAAAGGATTCAGAGACAAAACTCTCGGATTG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGTATAAATCTTCTAAAGGATTCAGAGACAAAACTCTCGGATTG  1048

seq1  AAATTTAATAAGTATTTGAAGTAGGGCAATAGCTCTGATGAGATCGCTTT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAATAAGTATTTGAAGTAGGGCAATAGCTCTGATGAGATCGCTTT  1098

seq1  GTAGGTTTGCCACAACACAGAGTGCCTCCCTGCTGTTCTTTAGATGAAGA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTTGCCACAACACAGAGTGCCTCCCTGCTGTTCTTTAGATGAAGA  1148

seq1  ATTC  1140
      ||||
seq2  ATTC  1152

seq1: chr1_173177770_173178730
seq2: B6Ng01-245J14.g_64_1026

seq1  GAATTCACAGCCAAGGCCACGAGCGGTGGTGGAGCAAGGGGGCACTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCCAAGGCCACGAGCGGTGGTGGAGCAAGGGGGCACTTGGT  50

seq1  GCAAAGATAAGGAAGCAGCAATTTACAAATGGGAGGGGAAATGCTCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGATAAGGAAGCAGCAATTTACAAATGGGAGGGGAAATGCTCTGAC  100

seq1  AGTGACTCTTCAATCCCTGCGATGCCCAAGTCACAGACTCAGGGAGCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTCTTCAATCCCTGCGATGCCCAAGTCACAGACTCAGGGAGCACC  150

seq1  CTTAGCAATACCTAGTAACCCGCCTCCATCCTGGACGGTCTTACGTGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAATACCTAGTAACCCGCCTCCATCCTGGACGGTCTTACGTGCCA  200

seq1  CAGTCTTCCTCAGACGTATCTAATAACATAGACATGTAATAATTCCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCCTCAGACGTATCTAATAACATAGACATGTAATAATTCCAGGA  250

seq1  CTCTGAGCCTAATTTTGTATGGACAAAGAGTTTTCCTGCCCTGGAGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGCCTAATTTTGTATGGACAAAGAGTTTTCCTGCCCTGGAGACTG  300

seq1  ATTTTTGTCTTTTTGTCTCCAAGCCCGGCTCCAGCTGGGCCACCCACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTCTTTTTGTCTCCAAGCCCGGCTCCAGCTGGGCCACCCACTCT  350

seq1  TTGAGGTTCTCCAATTTTCTCATTGGAAAGAGACCTCCTCCACATCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTCTCCAATTTTCTCATTGGAAAGAGACCTCCTCCACATCTCCC  400

seq1  CCAGACAGGGTCCCTGGGACATAGGCCACCAGCGGTGCAGCTGGGTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGGGTCCCTGGGACATAGGCCACCAGCGGTGCAGCTGGGTGGAG  450

seq1  CAGACAGACCAGGGGAGTGGCACCGAGCATTCTTTGTTGCAGAGGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACCAGGGGAGTGGCACCGAGCATTCTTTGTTGCAGAGGAAGAG  500

seq1  GAGAAAGCCAGATTTCTAGGCTAAAAATTGACCTAATGGGAAGCATACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCCAGATTTCTAGGCTAAAAATTGACCTAATGGGAAGCATACCA  550

seq1  AAGGGTGGGGCCAGAGATCCGTTGGCTGTGGGAACTGACCAAGACCTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGGGGCCAGAGATCCGTTGGCTGTGGGAACTGACCAAGACCTGGT  600

seq1  GTAGACAAGGTGGTCCCCAGAAAGTCAAGGCAGAGGCTTGGTCCCCTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAAGGTGGTCCCCAGAAAGTCAAGGCAGAGGCTTGGTCCCCTTAC  650

seq1  CCTCTACAGCCACCTCTCCTTTTCTGGGCCTTTCTTCCTGAGATATAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACAGCCACCTCTCCTTTTCTGGGCCTTTCTTCCTGAGATATAGTT  700

seq1  TAAACACAAAATGTGGTGATGATGGGA-GGGGGGGTTCCTCATTTTTGTG  749
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAAACACAAAATGTGGTGATGATGGGAGGGGGGGGTTCCTCATTTTTGTG  750

seq1  TTAATCCATCCTATGTGAAGTCAAGACAGACTCTAGCTTGCTTAGCCCTG  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAATCCATCCTATGTGAAGTCAAGACAGACTCTAGC-TGCTTAGCCCTG  799

seq1  GGGGTAGTTCAAGCAGGAACTGGGATGAGAACTCTTGGGGGGC-TACCT-  847
      ||||||||||||||| ||||||||||||||||||||||||||| | ||| 
seq2  GGGGTAGTTCAAGCAAGAACTGGGATGAGAACTCTTGGGGGGCTTTCCTA  849

seq1  AGGACACTGCATCTTTTGTGCCTTCTCCTTCTGCCAGCACCCCCCTCCCC  897
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  AGGACACTGCATC-TTTGTGCCTTCTCCTTCTGGCAGCACCCCCCTCCCC  898

seq1  ACGTGCTGT-AGCTGCCACTCTGTGGCCCTTTGTCTTTCACTGCTTAGTC  946
      ||||||||| ||||||||||||||||||||||||| ||||||||| ||||
seq2  ACGTGCTGTAAGCTGCCACTCTGTGGCCCTTTGTCCTTCACTGCTAAGTC  948

seq1  ACACTCTTTGTTCTC  961
      |||||||||||||||
seq2  ACACTCTTTGTTCTC  963