BAC Information

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BAC

Clone NameB6Ng01-245N15
Chromosome1 (Build37)
Map Location 48,063,028 - 48,202,034
singlet/doubletdoublet
Overlap genenone
Upstream geneEG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245N15.bB6Ng01-245N15.g
ACCGA054625GA054626
length1,1081,001
definitionB6Ng01-245N15.b B6Ng01-245N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,200,927 - 48,202,034)(48,063,028 - 48,064,017)
sequence
gaattcaatttaatattaggctcttgaattgttctcttttttgatgttgt
tcacatatttcccctcccctttctcctatcctgctattatagtcccatgc
ctaagtctgagactatgtcttgaaaaaaaaaaaagcaagctactacagac
aaaaagtttattttcttttatttattaaaaacattttaattcttcttttg
tagaaataaaacattgcagacacaatataacataacataaataagagata
tttcatctccctctccatcattatttgtattcattttatttaacctatta
ggatatattttcttaagtgtttacattgaaaatgtttgtcctttcctgag
tctaataaagagtatctggatgtctcaatgttttccaaagttttcataga
tactataagctttatattatggccttagtattttttcaatctaactaata
tcagaaaatgacaagagtaatatattgcaaacttaggctagacttgtatt
tgaataaatacaaagactactgtatgttctcatattgagaaactacagtt
gtagaactatcaaagtttcactctaaaatattcatgttataacttacata
atatcagactttccagtaacacactttctcctgcactttatggtttttgc
aggcattttttcactcagtagaatgaatacaccttagacatttatataaa
tcaccagcagaggaatgtttgtacctgtcaagctgaacaaatgttctaca
ccccatttattgccatgaatctaccagcggactgcttatttattcattgt
gttttacacgtctgatttattaagggactaacctacatgattgggtgctg
taagtactataccaaatcttatagtgaacaatttgaaacattttgtatag
tggagaaaatatttaattataattagaagctgaagggcttaactctccat
aactttcatgtaaaacagtgtaaaataaaacaggaatgcgcatatgaaaa
ttcccttgccacaatttgaagtctcttgtgcctggtgtctattcaagctc
ttctcttgtgttcatcaacataccggaagcacagaagcctacatgtacta
aatttctt
gaattctttctaacctattgcagtatatgtagtaatttggagacagttga
tgtcatggaatttaaaaggtgacatatttctaggttttagagattcatga
gttcctagttgattcatatcattattattattattattattattagtagt
agtagtagtagtagtagtagtatttatgtagtcatagtcgtagttgtagt
agtacagggaaaactgggtagtagaagtaagcagtatgcatctttcctgt
atatttgtgcaaatttgatatgcatatgcaattcttaagtttttggaatt
tgttgccacaaataaagtggttcatgaatgaaatacagtacagactcaga
tcaggacttgatcaaactactttattcttttgcaaatgtccttaggaaat
gccgaataattatccctattgtcccttgagaagcagttgtgaatattctt
tactagagcttcaaagtcaaaggcaaacactaggaaatttaatctaaata
ttctaagacatttaaaatgcaactgtgtatttctgttgatatttcaactt
gttaagcttagacttttccaaagttaaagtaatcaattactcatttcctc
tgtctccatgtacacacttgaaccaaataataacctttgtgtttggaatg
aaaagattaagcactcatttaatttagattaggtcctgtttgtttttcaa
ttaaagaaggagaaaatcccttttagatactataggttatttatattttg
ctttgtttccagttttaaaaccaaattatagctttttatatgctcatttc
tgtttttgaaaaagaaactgaattaaataatttgttgaaataaaaattca
tttaaggagtaataaattaaattggaatatttattataccctaattgtaa
cctcacattgggtcacaaataaaaatgcgacatttaaaccatgtaggaaa
tatatttgggttaatttatttattaggaatgaaatctcaagtcctgcatt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_48200927_48202034
seq2: B6Ng01-245N15.b_48_1155 (reverse)

seq1  AAGAAAATTAGTACATGTAGCTTTCTGTTGCTTTCCGTATGTTGATGAAC  50
      |||||| |||||||||||||  ||||| ||||| | ||||||||||||||
seq2  AAGAAATTTAGTACATGTAGGCTTCTG-TGCTTCCGGTATGTTGATGAAC  49

seq1  ACAAGAGAAGAGCTTGAATAGACA-CAGGCCACAGAGACTTCAAATTGTG  99
      |||||||||||||||||||||||| |||||   |||||||||||||||||
seq2  ACAAGAGAAGAGCTTGAATAGACACCAGGCACAAGAGACTTCAAATTGTG  99

seq1  GCAA-GGAATTTTCATATGCGCATTCCTG-TTTATTTTACACTGTTTTTA  147
      |||| |||||||||||||||||||||||| |||||||||||||| |||||
seq2  GCAAGGGAATTTTCATATGCGCATTCCTGTTTTATTTTACACTG-TTTTA  148

seq1  CATTGAAAGTTATGGAGAGTTAAGCCCTTCAGCTTCTAATTATAATTTAA  197
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CA-TGAAAGTTATGGAGAGTTAAGCCCTTCAGCTTCTAATTATAATTAAA  197

seq1  TATTTTCTCCACTATACAAAATGTTTCAAATTGTTCACTATAAGATTTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTCCACTATACAAAATGTTTCAAATTGTTCACTATAAGATTTGG  247

seq1  TATAGTACTTACAGCACCCAATCATGTAGGTTAGTCCCTTAATAAATCAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTACTTACAGCACCCAATCATGTAGGTTAGTCCCTTAATAAATCAG  297

seq1  ACGTGTAAAACACAATGAATAAATAAGCAGTCCGCTGGTAGATTCATGGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTAAAACACAATGAATAAATAAGCAGTCCGCTGGTAGATTCATGGC  347

seq1  AATAAATGGGGTGTAGAACATTTGTTCAGCTTGACAGGTACAAACATTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGGGGTGTAGAACATTTGTTCAGCTTGACAGGTACAAACATTCC  397

seq1  TCTGCTGGTGATTTATATAAATGTCTAAGGTGTATTCATTCTACTGAGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGTGATTTATATAAATGTCTAAGGTGTATTCATTCTACTGAGTG  447

seq1  AAAAAATGCCTGCAAAAACCATAAAGTGCAGGAGAAAGTGTGTTACTGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGCCTGCAAAAACCATAAAGTGCAGGAGAAAGTGTGTTACTGGA  497

seq1  AAGTCTGATATTATGTAAGTTATAACATGAATATTTTAGAGTGAAACTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGATATTATGTAAGTTATAACATGAATATTTTAGAGTGAAACTTT  547

seq1  GATAGTTCTACAACTGTAGTTTCTCAATATGAGAACATACAGTAGTCTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTCTACAACTGTAGTTTCTCAATATGAGAACATACAGTAGTCTTT  597

seq1  GTATTTATTCAAATACAAGTCTAGCCTAAGTTTGCAATATATTACTCTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATTCAAATACAAGTCTAGCCTAAGTTTGCAATATATTACTCTTG  647

seq1  TCATTTTCTGATATTAGTTAGATTGAAAAAATACTAAGGCCATAATATAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCTGATATTAGTTAGATTGAAAAAATACTAAGGCCATAATATAA  697

seq1  AGCTTATAGTATCTATGAAAACTTTGGAAAACATTGAGACATCCAGATAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATAGTATCTATGAAAACTTTGGAAAACATTGAGACATCCAGATAC  747

seq1  TCTTTATTAGACTCAGGAAAGGACAAACATTTTCAATGTAAACACTTAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTAGACTCAGGAAAGGACAAACATTTTCAATGTAAACACTTAAG  797

seq1  AAAATATATCCTAATAGGTTAAATAAAATGAATACAAATAATGATGGAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATCCTAATAGGTTAAATAAAATGAATACAAATAATGATGGAGA  847

seq1  GGGAGATGAAATATCTCTTATTTATGTTATGTTATATTGTGTCTGCAATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGAAATATCTCTTATTTATGTTATGTTATATTGTGTCTGCAATG  897

seq1  TTTTATTTCTACAAAAGAAGAATTAAAATGTTTTTAATAAATAAAAGAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTACAAAAGAAGAATTAAAATGTTTTTAATAAATAAAAGAAA  947

seq1  ATAAACTTTTTGTCTGTAGTAGCTTGCTTTTTTTTTTTTCAAGACATAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTTTTTGTCTGTAGTAGCTTGCTTTTTTTTTTTTCAAGACATAGT  997

seq1  CTCAGACTTAGGCATGGGACTATAATAGCAGGATAGGAGAAAGGGGAGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACTTAGGCATGGGACTATAATAGCAGGATAGGAGAAAGGGGAGGG  1047

seq1  GAAATATGTGAACAACATCAAAAAAGAGAACAATTCAAGAGCCTAATATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGTGAACAACATCAAAAAAGAGAACAATTCAAGAGCCTAATATT  1097

seq1  AAATTGAATTC  1108
      |||||||||||
seq2  AAATTGAATTC  1108

seq1: chr1_48063028_48064017
seq2: B6Ng01-245N15.g_65_1065

seq1  GAATTCTTTCTAACCTATTGCAGTATATGTAGTAATTTGGAGACAGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTAACCTATTGCAGTATATGTAGTAATTTGGAGACAGTTGA  50

seq1  TGTCATGGAATTTAAAAGGTGACATATTTCTAGGTTTTAGAGATTCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGAATTTAAAAGGTGACATATTTCTAGGTTTTAGAGATTCATGA  100

seq1  GTTCCTAGTTGATTCATATCATTATTATTATTATTATTATTATTAGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTAGTTGATTCATATCATTATTATTATTATTATTATTATTAGTAGT  150

seq1  AGTAGTAGTAGTAGTAGTAGTATTTATGTAGTCATAGTCGTAGTTGTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAGTAGTAGTAGTAGTATTTATGTAGTCATAGTCGTAGTTGTAGT  200

seq1  AGTACAGGGAAAACTGGGTAGTAGAAGTAAGCAGTATGCATCTTTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGGGAAAACTGGGTAGTAGAAGTAAGCAGTATGCATCTTTCCTGT  250

seq1  ATATTTGTGCAAATTTGATATGCATATGCAATTCTTAAGTTTTTGGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTGCAAATTTGATATGCATATGCAATTCTTAAGTTTTTGGAATT  300

seq1  TGTTGCCACAAATAAAGTGGTTCATGAATGAAATACAGTACAGACTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCACAAATAAAGTGGTTCATGAATGAAATACAGTACAGACTCAGA  350

seq1  TCAGGACTTGATCAAACTACTTTATTCTTTTGCAAATGTCCTTAGGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTTGATCAAACTACTTTATTCTTTTGCAAATGTCCTTAGGAAAT  400

seq1  GCCGAATAATTATCCCTATTGTCCCTTGAGAAGCAGTTGTGAATATTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAATAATTATCCCTATTGTCCCTTGAGAAGCAGTTGTGAATATTCTT  450

seq1  TACTAGAGCTTCAAAGTCAAAGGCAAACACTAGGAAATTTAATCTAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGAGCTTCAAAGTCAAAGGCAAACACTAGGAAATTTAATCTAAATA  500

seq1  TTCTAAGACATTTAAAATGCAACTGTGTATTTCTGTTGATATTTCAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGACATTTAAAATGCAACTGTGTATTTCTGTTGATATTTCAACTT  550

seq1  GTTAAGCTTAGACTTTTCCAAAGTTAAAGTAATCAATTACTCATTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCTTAGACTTTTCCAAAGTTAAAGTAATCAATTACTCATTTCCTC  600

seq1  TGTCTCCATGTACACACTTGAACCAAATAATAACCTTTGTG-TTGGAATG  649
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTCTCCATGTACACACTTGAACCAAATAATAACCTTTGTGTTTGGAATG  650

seq1  -AAAGATTAAGCACTCATTTAATTTAGATTAGGTCCTGTTTG-TTTTCAA  697
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAAGATTAAGCACTCATTTAATTTAGATTAGGTCCTGTTTGTTTTTCAA  700

seq1  TT-AAGAAGGGGAAA--TCCTTTTAGATACTATAGGTTATTTATA-TTTG  743
      || ||||||| ||||   ||||||||||||||||||||||||||| ||||
seq2  TTAAAGAAGGAGAAAATCCCTTTTAGATACTATAGGTTATTTATATTTTG  750

seq1  CTTTG-TTCCAGTTTTAAAACCAAA-TAGAGC-TTTTATATGCTCATTTC  790
      ||||| ||||||||||||||||||| || ||| |||||||||||||||||
seq2  CTTTGTTTCCAGTTTTAAAACCAAATTATAGCTTTTTATATGCTCATTTC  800

seq1  TGTTTT--GAAAAGAAACTGAATTAAATAAATTGTTGAAATAAAAATT-A  837
      ||||||   ||||||||||||||||||||| ||||||||||||||||| |
seq2  TGTTTTTGAAAAAGAAACTGAATTAAATAATTTGTTGAAATAAAAATTCA  850

seq1  TTTAAGGAGTAATAAATTAAATTGGATTATTTATTTATACCCTAATTGTA  887
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  TTTAAGGAGTAATAAATTAAATTGGAATATTTA-TTATACCCTAATTGTA  899

seq1  ACCTCACATT-GGTCAC-AATAAAAATGTGACATTTTAAAACATTGTAGG  935
      |||||||||| |||||| |||||||||| |||||||  ||||  ||||||
seq2  ACCTCACATTGGGTCACAAATAAAAATGCGACATTT--AAACCATGTAGG  947

seq1  AGATTATATTTTGTTTAATTTATTTATTAGGTAT-AAATCTTTAAGTTCT  984
      | | ||||||| | ||||||||||||||||| || ||||| | |||| ||
seq2  A-AATATATTTGGGTTAATTTATTTATTAGGAATGAAATC-TCAAGTCCT  995

seq1  GCATTT  990
      ||||||
seq2  GCATTT  1001