BAC Information

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BAC

Clone NameB6Ng01-246I13
Chromosome10 (Build37)1 (Build37)
Map Location 54,018,571 - 54,019,089141,082,972 - 141,084,109
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
Downstream geneLOC100041898, LOC382460
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246I13.bB6Ng01-246I13.g
ACCGA055126GA055127
length9931,149
definitionB6Ng01-246I13.b B6Ng01-246I13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,018,571 - 54,019,089)(141,082,972 - 141,084,109)
sequence
gaattcctttcatgcactgtgctttgtgtctccttaacacttctttttct
tttctttttttttataattttgattttatatgttctttttttaaatttat
tacgtattttcctcaattacatttccaatgctatcccaaaagtcccccat
acccccccccttccctacctacccattcccatttttttggccctggcatt
cccctgtactggagcatataaagtttgcaagtccaatgggcctctctttc
cagtgatggccgactaggccatcttttgatacatatgtagctagagtcaa
gagctccggggtactggttagttcataatgttgttccatctatagggttg
caggtccctttagctccttgggtactttctctagctcctccattgggggc
cctgtgttccatcctatagctgactgtgagcatccacttctgtgtttgct
aggccccggcatagtctctcaagagagagctatatctgggtcctttcagc
aaaatcttgctagtgtatgcaatcgtgtcagcgtttggaagctgattatg
gggtggatccctagatatggcagtctctagatggtccatccttttgtctc
agctccaaaatttgtctttgtaactccttccatgggtgttttgttcccaa
ttctaagaaggggcacagtgtccacactttggtcttcattcttctagagt
ttcatgcgtttagcaaattgtgtcttatatcttgggtatcctaagttttg
ggctaatatccacttatcagtgagtacatattgtgtgagttcctttgtga
ttgggttacctcactcaggatgatgccctccaggtccaaccattttgcct
aggaatttcataaatttcattctttttaataactgagtagtactccattt
gtgtagatgtaccacattttcttgtatccattcctctgttggaggggcat
ctaggttctttccagcttctggctattataaaataaggctgct
gaattctgtacaaatttgaccctaagcacactgtgatgcaggttgtgata
ctgtcttggtgaggtagctgttctaagtggcatcaacagcagtgctgaat
ttcaatctcattacttgcatcatcttctctcgtttgtcttcactgcccca
tcttccagattgaatttttaaaaaatgttttcctgcttgtcacactttaa
atgtcaacaggctagtgtttatataattggcttttcctttctctttcttt
tcaatttattacaccctcccttaacatgagaacatttcttctgctctgga
cagtaagaaacaaaacaaaaacctttctggataattaactattcaacttc
attcagaaacatctatgtcttgtgcaatcttttccttcaaggcaagattg
tgttaccaaatttgatttcaatcaattgtattgtgcttaggataaaatga
aagacgttttgtgattggttttcattcctctatctttgagactagcatgt
aaatgggcaaaatagttctaataacaatcacggggcaacattattgtttt
ttgtttcttttacaaccatcttttttatattccaacaaatgactggatgt
cttttaaatgtacattttgaattctgtctatagcaggtattgttttaagt
ctccaaggtctgggcatcgtagaagttatatgttgttgttaaaggagtga
cttgggaaatttttcctagaccaccaaagccccacagctgattcagcttc
agcaatctgatacatagaacatgagagctatagaaattaggggagatgtc
caaaggcttctagctaggagtgtttgcctgacactttgaaggtgaccaag
aacctgagactagataaaacatgggcctatggagacagccacatactatt
gttctgctaaagggatatagcagtactagcaacttccctactatgcctat
agatctggtgtctcacctgctcagccatgatcagaagaagcttcctcttg
cagtcgatgagatcaacataggagacttacaacctggacagtgtggagaa
gatgaacagaacttcagaatcattctgtctaaataagggtgttctttcaa
ttatccctccccctcaggaatcaggcaaacctatgtgaacagaagacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_54018571_54019089
seq2: B6Ng01-246I13.b_80_600

seq1  ACTTTTTTTTCTTTTC-TTTTTTTTCTGCACCTAACTTTA----TTTTTT  45
      |||| ||||||||||| |||||||| |     | | ||||    || |||
seq2  ACTTCTTTTTCTTTTCTTTTTTTTTATAATTTTGATTTTATATGTTCTTT  50

seq1  TAATATTTTTATTACATA-TTTCCTCAATTACATTTCCAATACTATCCCA  94
      |  ||  |||||||| || |||||||||||||||||||||| ||||||||
seq2  TTTTAAATTTATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCCA  100

seq1  AAAGTCCCCCATACCCTCCCCCCACTCCCTTACCCACCCATTCCCATCTT  144
      ||||||||||||||   |||||| || || |||| |||||||||||| ||
seq2  AAAGTCCCCCATAC---CCCCCCCCTTCCCTACCTACCCATTCCCAT-TT  146

seq1  TTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCC  194
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  TTTTGGCCCTGGCATTCCCCTGTACTGGAGCATATAAAGTTTGCAAGTCC  196

seq1  AATGGGCCTCTTTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACAT  244
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACAT  246

seq1  ATGCAGCTAGAGTCAAGAGCTCTGGAGTACTGGTTAGTTCATAATGTTGT  294
      ||| |||||||||||||||||| || ||||||||||||||||||||||||
seq2  ATGTAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGT  296

seq1  TCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAT  344
      |||| |||||||||||||| ||||||||||||||||||||||||||||| 
seq2  TCCATCTATAGGGTTGCAGGTCCCTTTAGCTCCTTGGGTACTTTCTCTAG  346

seq1  CTCCTCCATTGGGAGCCTTGTGATCCATCCACTAGCTGACTGTGAGCATC  394
      ||||||||||||| ||| |||| |||||||  ||||||||||||||||||
seq2  CTCCTCCATTGGGGGCCCTGTGTTCCATCCTATAGCTGACTGTGAGCATC  396

seq1  CACTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACAGCTATA  444
      |||||||||||||||||||||| ||||||||||| ||||||| |||||||
seq2  CACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCTCAAGAGAGAGCTATA  446

seq1  TCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAACAT  494
      ||||||||||||||||||||||||||||||||||||||| |||||| | |
seq2  TCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATCGTGTCAGCGT  496

seq1  TTGGAAGCTGATTATGGGGTGGATC  519
      |||||||||||||||||||||||||
seq2  TTGGAAGCTGATTATGGGGTGGATC  521

seq1: chr1_141082972_141084109
seq2: B6Ng01-246I13.g_68_1216

seq1  GAATTCTGTACAAATTTGACCCTAAGCACACTGTGATGCAGGTTGTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACAAATTTGACCCTAAGCACACTGTGATGCAGGTTGTGATA  50

seq1  CTGTCTTGGTGAGGTAGCTGTTCTAAGTGGCATCAACAGCAGTGCTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGGTGAGGTAGCTGTTCTAAGTGGCATCAACAGCAGTGCTGAAT  100

seq1  TTCAATCTCATTACTTGCATCATCTTCTCTCGTTTGTCTTCACTGCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCTCATTACTTGCATCATCTTCTCTCGTTTGTCTTCACTGCCCCA  150

seq1  TCTTCCAGATTGAATTTTTAAAAAATGTTTTCCTGCTTGTCACACTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGATTGAATTTTTAAAAAATGTTTTCCTGCTTGTCACACTTTAA  200

seq1  ATGTCAACAGGCTAGTGTTTATATAATTGGCTTTTCCTTTCTCTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAACAGGCTAGTGTTTATATAATTGGCTTTTCCTTTCTCTTTCTTT  250

seq1  TCAATTTATTACACCCTCCCTTAACATGAGAACATTTCTTCTGCTCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTATTACACCCTCCCTTAACATGAGAACATTTCTTCTGCTCTGGA  300

seq1  CAGTAAGAAACAAAACAAAAACCTTTCTGGATAATTAACTATTCAACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGAAACAAAACAAAAACCTTTCTGGATAATTAACTATTCAACTTC  350

seq1  ATTCAGAAACATCTATGTCTTGTGCAATCTTTTCCTTCAAGGCAAGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAACATCTATGTCTTGTGCAATCTTTTCCTTCAAGGCAAGATTG  400

seq1  TGTTACCAAATTTGATTTCAATCAATTGTATTGTGCTTAGGATAAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCAAATTTGATTTCAATCAATTGTATTGTGCTTAGGATAAAATGA  450

seq1  AAGACGTTTTGTGATTGGTTTTCATTCCTCTATCTTTGAGACTAGCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGTTTTGTGATTGGTTTTCATTCCTCTATCTTTGAGACTAGCATGT  500

seq1  AAATGGGCAAAATAGTTCTAATAACAATCACGGGGCAACATTATTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCAAAATAGTTCTAATAACAATCACGGGGCAACATTATTGTTTT  550

seq1  TTGTTTCTTTTACAACCATCTTTTTTATATTCCAACAAATGACTGGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTTTTACAACCATCTTTTTTATATTCCAACAAATGACTGGATGT  600

seq1  CTTTTAAATGTACATTTTGAATTCTGTCTATAGCAGGTATTGTTTTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAATGTACATTTTGAATTCTGTCTATAGCAGGTATTGTTTTAAGT  650

seq1  CTCCAAGGTCTGGGCATCGTAGAAGTTATATGTTGTTGTTAAAGGAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGTCTGGGCATCGTAGAAGTTATATGTTGTTGTTAAAGGAGTGA  700

seq1  CTTGGGAAATTTTTCCTAGACCACCAAAGCCCCACAGCTGATTCAGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAAATTTTTCCTAGACCACCAAAGCCCCACAGCTGATTCAGCTTC  750

seq1  AGCAATCTGATACATAGAACATGAGAGCTATAGAAATTAGGGGAGATGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTGATACATAGAACATGAGAGCTATAGAAATTAGGGGAGATGTC  800

seq1  CAAAGGCTTCTAGCTAGGAGTGTTTGCCTGACACTTTGAAGGTGACCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTTCTAGCTAGGAGTGTTTGCCTGACACTTTGAAGGTGACCAAG  850

seq1  AACCTGAGACTAGATAAAACATGGGCCTATGGAGACAGCCACATACTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGACTAGATAAAACATGGGCCTATGGAGACAGCCACATACTATT  900

seq1  GTTCTGCTAAAGGGATATAGCAGTACTAGCAACTT-CCTACTATGCCTAT  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTCTGCTAAAGGGATATAGCAGTACTAGCAACTTCCCTACTATGCCTAT  950

seq1  AGATCT-GTGTCTCACCTGCTCAGCCATGATCAG-AGAAGCTTCCTCTTG  997
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  AGATCTGGTGTCTCACCTGCTCAGCCATGATCAGAAGAAGCTTCCTCTTG  1000

seq1  CAGTCGATGAGAATCAACATA-GAGACCTACAA-CTGGACAGTGTGGAG-  1044
      ||||||||||| ||||||||| ||||| ||||| ||||||||||||||| 
seq2  CAGTCGATGAG-ATCAACATAGGAGACTTACAACCTGGACAGTGTGGAGA  1049

seq1  AGATG-ACAG-ACTTCAG-ATCATTCTGTCCTAAAT-AGGGTG-TCTT--  1087
      ||||| |||| ||||||| |||||||||| |||||| |||||| ||||  
seq2  AGATGAACAGAACTTCAGAATCATTCTGT-CTAAATAAGGGTGTTCTTTC  1098

seq1  CATTATCCCCTCCCCTCAGGGATCAGGGAA--CTATGTAGAACAGAAGGA  1135
       ||||||||  ||||||||| |||||| ||  |||||| |||||||| ||
seq2  AATTATCCCTCCCCCTCAGGAATCAGGCAAACCTATGT-GAACAGAA-GA  1146

seq1  CAA  1138
      |||
seq2  CAA  1149