BAC Information

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BAC

Clone NameB6Ng01-246M03
Chromosome1 (Build37)
Map Location 85,245,019 - 85,246,122
singlet/doubletsinglet
Overlap geneC130026I21Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378
Downstream geneLOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246M03.bB6Ng01-246M03.g
ACCGA055283GA055284
length1,0131,102
definitionB6Ng01-246M03.b B6Ng01-246M03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaactcaggtgacagca
gatgctggcgaggatgtggagaaaggggaacactcctccattgttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctggcggttcctcag
aaaattggacatagtactaccggaggatcccgcaatacctctcctgggca
tatatccagaagatgtcccaaccggtaagaagaacacatgctccactatg
ttcatagcagccttgtttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
aatactactcagctattaaaaaaatgaatttatgaaattcctaggcaaat
ggatggacctggagggtatcatcccgagtgaagtaacccaatcacaaagg
aactcgcacaatatgtactcactgataagtggatattagcccagaaactt
aggataccgaagatataagatacaatttgccaaacgcatgaaattcaaga
agaacaaagaccaaagtgtggacactttaccctttcttagaaatgggaac
aaaacacccatagaaggagttacagagacaaaatttggagctgtgatgaa
aggatggaccatctagtgattgccatatgcagggatccatcccataatca
gcttccaaatgctgacaccattgcatacactagcaagattttgctgaaag
gacccagatatagctctctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgatcacagtcagctattgggatgggtcacacgggccccc
aatggaggagctagagaaattacccaaggagctaaagggactgcacccct
ataaggtggacac
gaattcaactatgtttttgtctgttaattgtgcacttgcacgtgtgtata
tgtgtatgttttaactccgagttatctctctgatctcaaccctaaccttt
ttaaatgatcagctgggaaggaagaagagatcagagttttgaactagaag
gagcaagcttcaaggacaagtgttaaaatgagaattctttgaatcagttc
ttgggaaattaagctagggaacagacaatggtagagcctaaggatgactt
ctgggcatgagaacccaagaatttgtgaagggaaaacaagaaccagacgt
gaggagataaagacttgagcagctggagtattggatcgtttgcctgctat
cccagcacttgaaagcatccaggaccatggaaagaactgaggtgggagaa
aacggacttggaaggcttccaggaagcaatggggaaaccaatggatgaca
gtatcagaaaggtcacagtgtttttaacattattatcattatcataatta
tgatatttatcagtatgtggaggttgggcatatgttccatggtacacatg
gagaggccaagaaacaacttgtgagttgggtctgttcttccaccatatgg
gttgcagggatcaaattcaggtcaccaggcttggtggcaaggacctcgag
gtagtgagccatttgccagaccaatgacacattttaattgactggtgaca
tctcagagtagaagatgggagagcgccaaaggcgaggtgggaagaggtta
gagaagcacagccctgaagaggaagcttccccaggcaggacaagtgagga
gaaactgaaaaagtgcatcctgctggcaacacaggaagtgacttggctgc
cagtgaccctcggatgacaagtgaggagtgaaacctagcttcttgggccc
tcagagctgcatttcaaaatgcccaagcaataggaacaggatccacacca
agttctgcagcagcagtctacaccagaactgattgactgttgcctgctgc
agggagagtcctctagaggttaggggagccagaagctgagctacagtagc
cagtgggacacgaagctgttctcctaccttgagaacctggctgaattatg
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85245019_85246122
seq2: B6Ng01-246M03.g_67_1168

seq1  GAATTCAACTATGTTTTTGTCTGTTAATTGTGCACTTGCACGTGTGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTATGTTTTTGTCTGTTAATTGTGCACTTGCACGTGTGTATA  50

seq1  TGTGTATGTTTTAACTCCGAGTTATCTCTCTGATCTCAACCCTAACCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTTTTAACTCCGAGTTATCTCTCTGATCTCAACCCTAACCTTT  100

seq1  TTAAATGATCAGCTGGGAAGGAAGAAGAGATCAGAGTTTTGAACTAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGATCAGCTGGGAAGGAAGAAGAGATCAGAGTTTTGAACTAGAAG  150

seq1  GAGCAAGCTTCAAGGACAAGTGTTAAAATGAGAATTCTTTGAATCAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGCTTCAAGGACAAGTGTTAAAATGAGAATTCTTTGAATCAGTTC  200

seq1  TTGGGAAATTAAGCTAGGGAACAGACAATGGTAGAGCCTAAGGATGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAATTAAGCTAGGGAACAGACAATGGTAGAGCCTAAGGATGACTT  250

seq1  CTGGGCATGAGAACCCAAGAATTTGTGAATGGAAAACAAGAACCAGACGT  300
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGGGCATGAGAACCCAAGAATTTGTGAAGGGAAAACAAGAACCAGACGT  300

seq1  GAGGAGATAAAGACTTGAGCAGCTGGAGTATTGGATCGTTTGCCTGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATAAAGACTTGAGCAGCTGGAGTATTGGATCGTTTGCCTGCTAT  350

seq1  CCCAGCACTTGAAAGCATCCAGGACCATGGAAAGAACTGAGGTGGGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTTGAAAGCATCCAGGACCATGGAAAGAACTGAGGTGGGAGAA  400

seq1  AACGGACTTGGAAGGCTTCCAGGAAGCAATGGGGAAACCAATGGATGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGACTTGGAAGGCTTCCAGGAAGCAATGGGGAAACCAATGGATGACA  450

seq1  GTATCAGAAAGGTCACAGTGTTTTTATCATTATTATCATTATCATAATTA  500
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTATCAGAAAGGTCACAGTGTTTTTAACATTATTATCATTATCATAATTA  500

seq1  TGATATTTATCAGTATGTGGAGGTTGGGCATATGTTCCATGGTACACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTATCAGTATGTGGAGGTTGGGCATATGTTCCATGGTACACATG  550

seq1  GAGAGGCCAAGAAACAACTTGTGAGTTGGGTCTGTTCTTCCACCATATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCCAAGAAACAACTTGTGAGTTGGGTCTGTTCTTCCACCATATGG  600

seq1  GTTGCAGGGATCAAATTCAGGTCACCAGGCTTGGTGGCAAGGACCTCGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGGGATCAAATTCAGGTCACCAGGCTTGGTGGCAAGGACCTCGAG  650

seq1  GTAGTGAGCCATTTGACAGACCAATGACACATTTTAATTGACTGGTGACA  700
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTAGTGAGCCATTTGCCAGACCAATGACACATTTTAATTGACTGGTGACA  700

seq1  TCTCAGAGTAGAAGATGGGAGAGCGCCAAAGGCGAGGTGGGAAGAGGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGTAGAAGATGGGAGAGCGCCAAAGGCGAGGTGGGAAGAGGTTA  750

seq1  GAGAAGCACAGCCCTGAAGAGGAAGCTTCCCCAGGCAGGACAAGTGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCACAGCCCTGAAGAGGAAGCTTCCCCAGGCAGGACAAGTGAGGA  800

seq1  GAAACTGAAAAAGTGCATCCTGCTGGCAACACAGGAAGTGACTTGGCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAAAAAGTGCATCCTGCTGGCAACACAGGAAGTGACTTGGCTGC  850

seq1  CAGTGACCCTCAGATGGCAAGTGAGGAGTGAAACCCCAGC-TCTT-GGCC  898
      ||||||||||| |||| |||||||||||||||| || ||| |||| ||||
seq2  CAGTGACCCTCGGATGACAAGTGAGGAGTGAAA-CCTAGCTTCTTGGGCC  899

seq1  CTCAGAGCTGCATTTCAAAATGCCCAAGCAAAAGGAACAGGAACCACACC  948
      ||||||||||||||||||||||||||||||| |||||||||| ||||| |
seq2  CTCAGAGCTGCATTTCAAAATGCCCAAGCAATAGGAACAGGATCCACA-C  948

seq1  CAAGTTCTGCAGCAACAGTCTACACCAGAACTGATTGACTG-TGCCTGCT  997
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  CAAGTTCTGCAGCAGCAGTCTACACCAGAACTGATTGACTGTTGCCTGCT  998

seq1  GCAAGGGAGAGTCCTCTAGAGG-TAGGGGAGCCAGAAAGCTGAAGCTACA  1046
      || ||||||||||||||||||| |||||||||||| |||||| |||||||
seq2  GC-AGGGAGAGTCCTCTAGAGGTTAGGGGAGCCAG-AAGCTG-AGCTACA  1045

seq1  GGGAGCCAGTGGGAACAACAGAGGCTGTTCT-CTACC-TGAG-ACCT-GC  1092
       | |||||||||| |||   || |||||||| ||||| |||| |||| ||
seq2  -GTAGCCAGTGGG-ACA--CGAAGCTGTTCTCCTACCTTGAGAACCTGGC  1091

seq1  TGATTTTATGTT  1104
      |||  |||||||
seq2  TGA-ATTATGTT  1102