BAC Information

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BAC

Clone NameB6Ng01-247C05
Chromosome1 (Build37)
Map Location 164,433,623 - 164,571,282
singlet/doubletdoublet
Overlap gene5630401D24Rik, Vamp4, LOC435651, Myoc
Upstream geneTnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os
Downstream geneBat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1, LOC665237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247C05.bB6Ng01-247C05.g
ACCGA055559GA055560
length1,164520
definitionB6Ng01-247C05.b B6Ng01-247C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,570,118 - 164,571,282)(164,433,623 - 164,434,148)
sequence
gaattcattaataggaggaagagaatgtgcgatagaagacacaagctggc
tgtcaaagcagaagccggcaccagcaaggaaggtaaacaccaggaggctt
tcaaccccgagaaggtggtagggcccttgagatcatgctccttgcactga
cagtttggttctaggaacttgagcacatgcttgggagagtgtccctcata
actacactgtcacctgaccacggagagctgatggaggacgcccacgtgtt
tggttaccaggtttcttagactgctttgtttaaaatgaaccttttgcctc
gattcccttggtgcttgtcattgacacttttaaggagcccagacttccta
caactgagtgtgtgtgttcatgaaacaagtaactatttgggaacaaaaca
ctcataaaacgtggcacaaatactgtcttctaactgtccaaaataacgtg
cccatctctcagtgcgcccgaatacccatctccaggcaggagccgggaca
aacagaaaagggcgtttgtgagaagggccactgcagagttttttggtgac
ctgaaagcagatattctttgattcagcaacaaaagtcaaaatttccatag
ccacgcaccaagggacctgagagagatattgtttcctctttctttaccaa
ggtaagagattaaaaaataaaaaaccaccagccttggtggtgcctacctt
taatcctggtgcttcagggggaaggggcaggcagatctttgagttcaagg
ccagtctagtctatagagggagtttcagacagtcaggacaacacagagaa
accctgtctcaaaaaaccaaatacattaataacagcagcagcagcagtag
taataataataataataataataataataataataataatatagacaacc
agttttcattgcacaaatcatttgggcatctcataaatagggggtcattt
tggtaggaatcgcaaattctaagcaaaggttgaaaaagaataaattatcc
aaagggcacagcaagccattttctattgatatcatcattatgtatcttgc
cacttggcccaatgttttgtcaattggctgtggaccatgatcatttgtca
ttgacttggtcacaagagctcagattccactgacgtaaacagagcacttc
tagaagcaatgcaa
tatttaaaagaaaagaacatttctgttgaatattcatatattatatgttg
tgaatattcataattgttgaatattcaaataaagaggaatgaggtcccac
tatgtaggaggaacagtggcagccacctctatgtaaactctgggggccct
gcagccgcaaaggcatctccttcaggaagacctgagggctgcctgagaga
ccaaggattgccggcacagaccatgccagccaatcaggaactagtgttta
gaagagatgctttcttgcggccaatggggcacaggtcgagggtattaaaa
gagctcgcagcaagcagtgttcagagaagtttgctatggcatttctcacc
tgtccccagagtctgtgtcattgactccaaggagccacctcacctccaac
ccccaagggcaggtcgggtggggcagtgattaatccagggcacaggcagc
accacaacatatactttatttgaaagtttaattgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_164570118_164571282
seq2: B6Ng01-247C05.b_46_1209 (reverse)

seq1  TTGCA-TGCTTCTAGAAAGTTGGCTCCTTGTTTAGGTCAGTGG-ATCTGA  48
      ||||| ||||||||| ||||  ||||  |||||| |||||||| ||||||
seq2  TTGCATTGCTTCTAG-AAGT--GCTC--TGTTTACGTCAGTGGAATCTGA  45

seq1  GCTCTTGTG-CCCAGTC-ATGACAAAATGATCATGGCCCACAGCCAAATG  96
      ||||||||| || |||| ||||| |||||||||||| |||||||||| ||
seq2  GCTCTTGTGACCAAGTCAATGAC-AAATGATCATGGTCCACAGCCAATTG  94

seq1  AC-AAACATGGGGCCAGGTGGC-AGATACAT-ATGATGAATAATCAATAG  143
      || |||||| |||||| ||||| |||||||| |||||||   ||||||||
seq2  ACAAAACATTGGGCCAAGTGGCAAGATACATAATGATGA--TATCAATAG  142

seq1  AAAATGGCTTGCTGTGCCC-TTGGATAATTTATTCTTTTTCAACCTTTGC  192
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAATGGCTTGCTGTGCCCTTTGGATAATTTATTCTTTTTCAACCTTTGC  192

seq1  TTAGAATTTGCGATTCCTACCAAAATGACCCCCTATTTATGAGATG-CCA  241
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAGAATTTGCGATTCCTACCAAAATGACCCCCTATTTATGAGATGCCCA  242

seq1  AATGATTTGTGCAATGAAAACTGGTTGTCTATTATTATTATTATTATTAT  291
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATGATTTGTGCAATGAAAACTGGTTGTCTA-TATTATTATTATTATTAT  291

seq1  TATTATTATTATTATTATTATTACTACTGCTGCTGCTGCTGTTATTAATG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTATTATTATTACTACTGCTGCTGCTGCTGTTATTAATG  341

seq1  TATTTGGTTTTTTGAGACAGGGTTTCTCTGTGTTGTCCTGACTGTCCTGA  391
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATTTGGTTTTTTGAGACAGGGTTTCTCTGTGTTGTCCTGACTGT-CTGA  390

seq1  AACTCCCTCTATAGACTAGACTGGCCTTGAACTCAAAGATCTGCCTGCCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCTCTATAGACTAGACTGGCCTTGAACTCAAAGATCTGCCTGCCC  440

seq1  CTTCCCCCTGAAGCACCAGGATTAAAGGTAGGCACCACCAAGGCTGGTGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCTGAAGCACCAGGATTAAAGGTAGGCACCACCAAGGCTGGTGG  490

seq1  TTTTTTATTTTTTAATCTCTTACCTTGGTAAAGAAAGAGGAAACAATATC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTTTTAATCTCTTACCTTGGTAAAGAAAGAGGAAACAATATC  540

seq1  TCTCTCAGGTCCCTTGGTGCGTGGCTATGGAAATTTTGACTTTTGTTGCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGGTCCCTTGGTGCGTGGCTATGGAAATTTTGACTTTTGTTGCT  590

seq1  GAATCAAAGAATATCTGCTTTCAGGTCACCAAAAAACTCTGCAGTGGCCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAAGAATATCTGCTTTCAGGTCACCAAAAAACTCTGCAGTGGCCC  640

seq1  TTCTCACAAACGCCCTTTTCTGTTTGTCCCGGCTCCTGCCTGGAGATGGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACAAACGCCCTTTTCTGTTTGTCCCGGCTCCTGCCTGGAGATGGG  690

seq1  TATTCGGGCGCACTGAGAGATGGGCACGTTATTTTGGACAGTTAGAAGAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGGGCGCACTGAGAGATGGGCACGTTATTTTGGACAGTTAGAAGAC  740

seq1  AGTATTTGTGCCACGTTTTATGAGTGTTTTGTTCCCAAATAGTTACTTGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGTGCCACGTTTTATGAGTGTTTTGTTCCCAAATAGTTACTTGT  790

seq1  TTCATGAACACACACACTCAGTTGTAGGAAGTCTGGGCTCCTTAAAAGTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAACACACACACTCAGTTGTAGGAAGTCTGGGCTCCTTAAAAGTG  840

seq1  TCAATGACAAGCACCAAGGGAATCGAGGCAAAAGGTTCATTTTAAACAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGACAAGCACCAAGGGAATCGAGGCAAAAGGTTCATTTTAAACAAA  890

seq1  GCAGTCTAAGAAACCTGGTAACCAAACACGTGGGCGTCCTCCATCAGCTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTAAGAAACCTGGTAACCAAACACGTGGGCGTCCTCCATCAGCTC  940

seq1  TCCGTGGTCAGGTGACAGTGTAGTTATGAGGGACACTCTCCCAAGCATGT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGGTCAGGTGACAGTGTAGTTATGAGGGACACTCTCCCAAGCATGT  990

seq1  GCTCAAGTTCCTAGAACCAAACTGTCAGTGCAAGGAGCATGATCTCAAGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGTTCCTAGAACCAAACTGTCAGTGCAAGGAGCATGATCTCAAGG  1040

seq1  GCCCTACCACCTTCTCGGGGTTGAAAGCCTCCTGGTGTTTACCTTCCTTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACCACCTTCTCGGGGTTGAAAGCCTCCTGGTGTTTACCTTCCTTG  1090

seq1  CTGGTGCCGGCTTCTGCTTTGACAGCCAGCTTGTGTCTTCTATCGCACAT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCCGGCTTCTGCTTTGACAGCCAGCTTGTGTCTTCTATCGCACAT  1140

seq1  TCTCTTCCTCCTATTAATGAATTC  1165
      ||||||||||||||||||||||||
seq2  TCTCTTCCTCCTATTAATGAATTC  1164

seq1: chr1_164433623_164434148
seq2: B6Ng01-247C05.g_67_592

seq1  GAATTCTATTTAAAAGAAAAGAACATTTCTGTTGAATATTCATATATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTAAAAGAAAAGAACATTTCTGTTGAATATTCATATATTAT  50

seq1  ATGTTGTGAATATTCATAATTGTTGAATATTCAAATAAAGAGGAATGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTGAATATTCATAATTGTTGAATATTCAAATAAAGAGGAATGAGG  100

seq1  TCCCACTATGTAGGAGGAACAGTGGCAGCCACCTCTATGTAAACTCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTATGTAGGAGGAACAGTGGCAGCCACCTCTATGTAAACTCTGGG  150

seq1  GGCCCTGCAGCCGCAAAGGCATCTCCTTCAGGAAGACCTGAGGGCTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGCAGCCGCAAAGGCATCTCCTTCAGGAAGACCTGAGGGCTGCCT  200

seq1  GAGAGACCAAGGATTGCCGGCACAGACCATGCCAGCCAATCAGGAACTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCAAGGATTGCCGGCACAGACCATGCCAGCCAATCAGGAACTAG  250

seq1  TGTTTAGAAGAGATGCTTTCTTGCGGCCAATGGGGCACAGGTCGAGGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGAAGAGATGCTTTCTTGCGGCCAATGGGGCACAGGTCGAGGGTA  300

seq1  TTAAAAGAGCTCGCAGCAAGCAGTGTTCAGAGAAGTTTGCTATGGCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAGCTCGCAGCAAGCAGTGTTCAGAGAAGTTTGCTATGGCATTT  350

seq1  CTCACCTGTCCCCAGAGTCTGTGTCATTGACTCCAAGGAGCCACCTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGTCCCCAGAGTCTGTGTCATTGACTCCAAGGAGCCACCTCACC  400

seq1  TCCAACCCCCAAGGGCAGGTCGGGTGGGGCAGTGATTAATCCAGGGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCCCCAAGGGCAGGTCGGGTGGGGCAGTGATTAATCCAGGGCACA  450

seq1  GGCAGCACCACAACATATACTTTATTTGAAAGTTTAATTGTGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCACCACAACATATACTTTATTTGAAAGTTTAATTGTGTGTGTGTG  500

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTG  526
      ||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTG  526