BAC Information

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BAC

Clone NameB6Ng01-247E07
Chromosome1 (Build37)
Map Location 14,907,048 - 15,028,054
singlet/doubletdoublet
Overlap geneTrpa1
Upstream geneLOC100039869, Eya1, LOC665391, Msc, Smt3h2-ps4, EG665407
Downstream geneEG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247E07.bB6Ng01-247E07.g
ACCGA055647GA055648
length760478
definitionB6Ng01-247E07.b B6Ng01-247E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,907,048 - 14,907,807)(15,027,575 - 15,028,054)
sequence
gaattctgagttctgtgattatattcaagacaacaggctctagatcattt
ttagagaagttagttctaaattaagcccttcaaattagagacttcagacc
gatctgctttagtttgcttgaataaaatttgtctaatcagaataagatcc
aaaaggaaagagaaccaagataaaagtatagttaaatcccaaaatactat
taaaaggtattaacttgagttaatttcttgacttaatcgataaaactaaa
gatactaaagtttcttccacaaatttgtataaaacaacttacatgaggga
tttttttttcaaattgagatttgaaaaaaattttaagaaatttctttctg
tcccacattaattataacgatttcatcctagtattgaaattcagtcatca
tgtggttcttcctactacagcaaacgccatggttaatatgctaagctgac
gtgggacagacacctgtgttaaatctggtgggggggggggtacaggtttg
tgtgaggtaggatgcatttgactcacattcgcagtggtatctacatagaa
agcagttggataatgtctgccagacctaaagctatgcttacctctcacct
cttgctctggaccaagctaccaatagacagccaaaactgagagcacattt
acagtcatagattaaaaacatcgaagctaaataaattagagaacacaccc
aacaaacaaaaatgacctaagtgtgtatcgtacatagggatttaaattaa
tcatgatgga

gaattcaaactgcaaaattcttgtgaggaacagtaagattcttattcagt
aaccatattgcagagaattcaacactggtgaacataaaaaagaaatagta
cacattcgccaggccccaccccgagatgactagctataggcaatcaatgt
ctacagagggcgagtatcagacttctccaggaaggagttcttgacaggtt
gtccaattccaagtggtcatcccaaaaccaaaatgtttatgtatatatga
acattgctaaatgggcccagcagatgtcatatattttcatatgtagatta
atgtgatagaaaaagagaccataaactttagaggaacagaaagaagagag
ggtgcttcacataaaaccagagacactgaaacttatagaggagaaagtgg
ggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaaca
gcaaatggccttgtgcctgtaaagaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_14907048_14907807
seq2: B6Ng01-247E07.b_44_803

seq1  GAATTCTGAGTTCTGTGATTATATTCAAGACAACAGGCTCTAGATCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTTCTGTGATTATATTCAAGACAACAGGCTCTAGATCATTT  50

seq1  TTAGAGAAGTTAGTTCTAAATTAAGCCCTTCAAATTAGAGACTTCAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAGTTAGTTCTAAATTAAGCCCTTCAAATTAGAGACTTCAGACC  100

seq1  GATCTGCTTTAGTTTGCTTGAATAAAATTTGTCTAATCAGAATAAGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTTTAGTTTGCTTGAATAAAATTTGTCTAATCAGAATAAGATCC  150

seq1  AAAAGGAAAGAGAACCAAGATAAAAGTATAGTTAAATCCCAAAATACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAGAGAACCAAGATAAAAGTATAGTTAAATCCCAAAATACTAT  200

seq1  TAAAAGGTATTAACTTGAGTTAATTTCTTGACTTAATCGATAAAACTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTATTAACTTGAGTTAATTTCTTGACTTAATCGATAAAACTAAA  250

seq1  GATACTAAAGTTTCTTCCACAAATTTGTATAAAACAACTTACATGAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTAAAGTTTCTTCCACAAATTTGTATAAAACAACTTACATGAGGGA  300

seq1  TTTTTTTTTCAAATTGAGATTTGAAAAAAATTTTAAGAAATTTCTTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCAAATTGAGATTTGAAAAAAATTTTAAGAAATTTCTTTCTG  350

seq1  TCCCACATTAATTATAACGATTTCATCCTAGTATTGAAATTCAGTCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATTAATTATAACGATTTCATCCTAGTATTGAAATTCAGTCATCA  400

seq1  TGTGGTTCTTCCTACTACAGCAAACGCCATGGTTAATATGCTAAGCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTCTTCCTACTACAGCAAACGCCATGGTTAATATGCTAAGCTGAC  450

seq1  GTGGGACAGACACCTGTGTTAAATCTGGTGGGGGGGGGGGTACAGGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACAGACACCTGTGTTAAATCTGGTGGGGGGGGGGGTACAGGTTTG  500

seq1  TGTGAGGTAGGATGCATTTGACTCACATTCGCAGTGGTATCTACATAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGTAGGATGCATTTGACTCACATTCGCAGTGGTATCTACATAGAA  550

seq1  AGCAGTTGGATAATGTCTGCCAGACCTAAAGCTATGCTTACCTCTCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTGGATAATGTCTGCCAGACCTAAAGCTATGCTTACCTCTCACCT  600

seq1  CTTGCTCTGGACCAAGCTACCAATAGACAGCC-AAACTGAGAGCACATTT  649
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTGCTCTGGACCAAGCTACCAATAGACAGCCAAAACTGAGAGCACATTT  650

seq1  ACAGTCATAGATTAAAAACATCGAAGCTAAATAAAATAGAGAACACAACC  699
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  ACAGTCATAGATTAAAAACATCGAAGCTAAATAAATTAGAGAACACACCC  700

seq1  AACAAACAAAAATGACCTAAGTGTGTATCAGTACATAGGTAGTTAAATAA  749
      ||||||||||||||||||||||||||||| ||||||||| | |||||| |
seq2  AACAAACAAAAATGACCTAAGTGTGTATC-GTACATAGGGATTTAAATTA  749

seq1  ATCATGATGTA  760
      ||||||||| |
seq2  ATCATGATGGA  760


seq1: chr1_15027575_15028054
seq2: B6Ng01-247E07.g_68_545 (reverse)

seq1  AATTCTCGATCTTACA-GCACAA-GCCA-TTGCTGTTCTGTTCAGGAATT  47
      ||||||     ||||| |||||| |||| |||||||||||||||||||||
seq2  AATTCT-----TTACAGGCACAAGGCCATTTGCTGTTCTGTTCAGGAATT  45

seq1  TTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATA  95

seq1  AGTTTCAGTGTCTCTGGTTTTATGTGAAGCACCCTCTCTTCTTTCTGTTC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGTGTCTCTGGTTTTATGTGAAGCACCCTCTCTTCTTTCTGTTC  145

seq1  CTCTAAAGTTTATGGTCTCTTTTTCTATCACATTAATCTACATATGAAAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAGTTTATGGTCTCTTTTTCTATCACATTAATCTACATATGAAAA  195

seq1  TATATGACATCTGCTGGGCCCATTTAGCAATGTTCATATATACATAAACA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGACATCTGCTGGGCCCATTTAGCAATGTTCATATATACATAAACA  245

seq1  TTTTGGTTTTGGGATGACCACTTGGAATTGGACAACCTGTCAAGAACTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTTGGGATGACCACTTGGAATTGGACAACCTGTCAAGAACTCC  295

seq1  TTCCTGGAGAAGTCTGATACTCGCCCTCTGTAGACATTGATTGCCTATAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAGAAGTCTGATACTCGCCCTCTGTAGACATTGATTGCCTATAG  345

seq1  CTAGTCATCTCGGGGTGGGGCCTGGCGAATGTGTACTATTTCTTTTTTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCATCTCGGGGTGGGGCCTGGCGAATGTGTACTATTTCTTTTTTAT  395

seq1  GTTCACCAGTGTTGAATTCTCTGCAATATGGTTACTGAATAAGAATCTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCAGTGTTGAATTCTCTGCAATATGGTTACTGAATAAGAATCTTA  445

seq1  CTGTTCCTCACAAGAATTTTGCAGTTTGAATTC  480
      |||||||||||||||||||||||||||||||||
seq2  CTGTTCCTCACAAGAATTTTGCAGTTTGAATTC  478


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