BAC Information

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BAC

Clone NameB6Ng01-247E11
Chromosome1 (Build37)
Map Location 132,548,763 - 132,549,921
singlet/doubletsinglet
Overlap geneC4bp
Upstream geneThsd7b, LOC100042745, LOC100042740, Daf2, Cd55, Zp3r
Downstream geneC4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247E11.bB6Ng01-247E11.g
ACCGA055655GA055656
length1,1611,172
definitionB6Ng01-247E11.b B6Ng01-247E11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagctgccaggaagggtaagtgtgaggtattttatacataattct
tctatgagaggtggggtggaggcttattcaaaggggacccaccgtcttag
aggagatcaggggttaagggactctgtaggagggggcatgggggactctg
tgacatgggggctgggggaaggggagcaattgagatataaaaactaaata
aaaaataaaatttaaaaataaaaaataaaaaattcttctaaattaacatt
aaaaatagatactttcaaattttgaagtgatgtagagtatgtattgagaa
ttctcactttgatcccatctccatgtgccccattccttcctgtcctaaaa
aaaagaattttttttttcagtttttttgtatctttgtagtgtttcctcat
tcaaatacaagccaagagatcagcacatgtttaaattatttaaaatgatc
taattataaatatacatatatatttaaatctgaattcatagattcataaa
tatatattttcatatgtatatttgaattcataatgaatgactcattcata
atgacagggtctcactatgtagccatcactggtctagaactccatatata
ccaggctggccctaaatttgcagagatccacctgcccctgcctcctatgt
gttaggattgaaggtttgcattattaaacccagttggtttcagtttttta
atattctaatgtattcttgagagttgcacacatgcattgtgagaatgtca
tacatgcatacaatgaaatcggatcatagacatccctatttccccttcca
gtttccctatattccccacaacatgtcctcttctcccaacttcatggttt
tgtttgtttgcttactttttttttttctttacagttcactaagcatatca
gtgctgcccatatgtgcataggagcagtgccactaactgggaacatggga
gtggccacaccctcaaaaaagaatggggaaaatgtaattttgatcacact
tgactatttatactcatcagtaaatcatgggaacatattctatgcttgta
tgtagagaggttctttcatttactttccgttacactgcagagagttttat
tgtatggtttggtcatggactgaactctttggagaccatggaatccagtc
ttggctgtttg
gaattcagaacttttcagctggggaacgagagtaccagtgagtacagctt
tacgaggtaagtctgatcttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaaaatgtttggccttgaattttttctagtgttaga
agcccttttgttccttttcacatgttatcaagtggttaaggcagggagga
ttctagaggaaattcaggacaagctatcagaagtaaagtggggagagaga
gtaggaacaaagaggaaatatggtacacaaaataagtatacaggcctttc
caagggtcttgaacccgaggaaaagttaaggttaggtaggaatacctgga
gagagattagaagaaaaagaggaaaaagggaaaagaagaaagatcaatta
gcggaggtctctaggaaaaggagcctgtgctcatcgctggatgggctcgg
ggagccagctcttagtagctctgaagcagatgaagaattctcctctgaag
aaacagactgggaggaagaagcagctcattatgagaaaaaagggtaccag
ccaggtaaagtgctagctaatcagttaaggaagccaaaagcggctggcga
aggccagtttgctgattggcctcagggcagtcggcttcaaggtccgccct
atgcggagcccccgccctgcgtagtgcgtcagcaatgcgcagagaggcaa
tgcgcagagagatgcgcagagaggcagtgcgcagagaggcagtgcgcaga
ctcattcattcccagagaggaacaaaggaaaatacaacaggcatttccag
tctttgaaggagccgagggtgggcgtgtccacgctccggtagaatactta
caaattaaagaactcgccgagtcggtccgtaatacggaaccaatgctaat
tttaccttggtgcagttagacaggcttgccggcatggcactaactcctgg
ccgactggcaaacggtgtaaaagccgctcctcccctagtatggggcaaat
atatgggaatggagagcctcctttgggcatgaaactgcaccaagccgcag
cccgagcaacgcagctgcttgactccagagcagagagaatggactttgga
cctgttacccggtcagagctaatctgctgatcggacaacctaccatttga
ggggagccttatatgtgctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_132548763_132549921
seq2: B6Ng01-247E11.b_42_1202 (reverse)

seq1  CAAACAGCAAAAGACTGGAAATATCCAT-GACTCCAAAGAGTTCAGT-CA  48
      ||||||||  |||||||||    ||||| | |||||||||||||||| ||
seq2  CAAACAGC-CAAGACTGGA---TTCCATGGTCTCCAAAGAGTTCAGTCCA  46

seq1  TGACACAACCATACAATAAAACTCTCTGCAGTTGTAAGGGGAAATTAATG  98
      ||||  ||||||||||||||||||||||||| ||||| || || | ||||
seq2  TGACCAAACCATACAATAAAACTCTCTGCAG-TGTAACGGAAAGTAAATG  95

seq1  -AAGAACCTCTCTACATACAAGCATAGAATATGT--CCATGATTTACTGA  145
       |||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  AAAGAACCTCTCTACATACAAGCATAGAATATGTTCCCATGATTTACTGA  145

seq1  TGAGTAT-AATAGTCAAGTGTGATTCAAAATTACATTTTCCCCATTCTTT  194
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  TGAGTATAAATAGTCAAGTGTGA-TCAAAATTACATTTTCCCCATTCTTT  194

seq1  TTTGAGGGTGTGGCCACTCCCATGTT-CCAGTTAGTGGCACTGCTCCTAT  243
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTGAGGGTGTGGCCACTCCCATGTTCCCAGTTAGTGGCACTGCTCCTAT  244

seq1  GCACATATGGGCAGCACTGATATGCTTAGTGAACTGTAAAG-AAAAAAAA  292
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCACATATGGGCAGCACTGATATGCTTAGTGAACTGTAAAGAAAAAAAAA  294

seq1  AAGTAAGCAAACAAACAAAACCATGAAGTTGGGAGAAGAGGACATGTTGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGCAAACAAACAAAACCATGAAGTTGGGAGAAGAGGACATGTTGT  344

seq1  GGGGAATATAGGGAAACTGGAAGGGGAAATAGGGATGTCTATGATCCGAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATATAGGGAAACTGGAAGGGGAAATAGGGATGTCTATGATCCGAT  394

seq1  TTCATTGTATGCATGTATGACATTCTCACAATGCATGTGTGCAACTCTCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGTATGCATGTATGACATTCTCACAATGCATGTGTGCAACTCTCA  444

seq1  AGAATACATTAGAATATTAAAAAACTGAAACCAACTGGGTTTAATAATGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACATTAGAATATTAAAAAACTGAAACCAACTGGGTTTAATAATGC  494

seq1  AAACCTTCAATCCTAACACATAGGAGGCAGGGGCAGGTGGATCTCTGCAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTCAATCCTAACACATAGGAGGCAGGGGCAGGTGGATCTCTGCAA  544

seq1  ATTTAGGGCCAGCCTGGTATATATGGAGTTCTAGACCAGTGATGGCTACA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGGCCAGCCTGGTATATATGGAGTTCTAGACCAGTGATGGCTACA  594

seq1  TAGTGAGACCCTGTCATTATGAATGAGTCATTCATTATGAATTCAAATAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGACCCTGTCATTATGAATGAGTCATTCATTATGAATTCAAATAT  644

seq1  ACATATGAAAATATATATTTATGAATCTATGAATTCAGATTTAAATATAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGAAAATATATATTTATGAATCTATGAATTCAGATTTAAATATAT  694

seq1  ATGTATATTTATAATTAGATCATTTTAAATAATTTAAACATGTGCTGATC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATTTATAATTAGATCATTTTAAATAATTTAAACATGTGCTGATC  744

seq1  TCTTGGCTTGTATTTGAATGAGGAAACACTACAAAGATACAAAAAAACTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTTGTATTTGAATGAGGAAACACTACAAAGATACAAAAAAACTG  794

seq1  AAAAAAAAAATTCTTTTTTTTAGGACAGGAAGGAATGGGGCACATGGAGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATTCTTTTTTTTAGGACAGGAAGGAATGGGGCACATGGAGA  844

seq1  TGGGATCAAAGTGAGAATTCTCAATACATACTCTACATCACTTCAAAATT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCAAAGTGAGAATTCTCAATACATACTCTACATCACTTCAAAATT  894

seq1  TGAAAGTATCTATTTTTAATGTTAATTTAGAAGAATTTTTTATTTTTTAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTATCTATTTTTAATGTTAATTTAGAAGAATTTTTTATTTTTTAT  944

seq1  TTTTAAATTTTATTTTTTATTTAGTTTTTATATCTCAATTGCTCCCCTTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTTTATTTTTTATTTAGTTTTTATATCTCAATTGCTCCCCTTC  994

seq1  CCCCAGCCCCCATGTCACAGAGTCCCCCATGCCCCCTCCTACAGAGTCCC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCCCCATGTCACAGAGTCCCCCATGCCCCCTCCTACAGAGTCCC  1044

seq1  TTAACCCCTGATCTCCTCTAAGACGGTGGGTCCCCTTTGAATAAGCCTCC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCCTGATCTCCTCTAAGACGGTGGGTCCCCTTTGAATAAGCCTCC  1094

seq1  ACCCCACCTCTCATAGAAGAATTATGTATAAAATACCTCACACTTACCCT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCTCTCATAGAAGAATTATGTATAAAATACCTCACACTTACCCT  1144

seq1  TCCTGGCAGCTGAATTC  1159
      |||||||||||||||||
seq2  TCCTGGCAGCTGAATTC  1161