BAC Information

Click to search

BAC

Clone NameB6Ng01-247E23
Chromosome1 (Build37)
Map Location 149,643,442 - 149,748,040
singlet/doubletdoublet
Overlap genenone
Upstream geneB830045N13Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247E23.bB6Ng01-247E23.g
ACCGA055677GA055678
length1,1431,138
definitionB6Ng01-247E23.b B6Ng01-247E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,746,883 - 149,748,040)(149,643,442 - 149,644,587)
sequence
gaattctgaatgcctttctcttaaaagtacaaagcaaacaaacagcacat
aatgccagacattctttacaaataagtatagttatggtaatattactttt
cattcttttaataacactttatgaatatattatactttgataagacttta
tgaaaatacatataagttaatgagaatgtgtgtttatctgccagattttg
tataatgattaaataaaattctatgttttgaaatatactttcaaacaatg
gattcatgctttggtattatttgttttaggtttattgtgttaaaagcaag
tataccaacaaacacaaattttatgtaaaactatccctattgtcaaactg
attataaaaatgtacactaataaaatagttaacatggaaaacctagaagt
ttaaattatgagtttcatggtttatatatatttcacaattcttgcatgat
ttagtagtattgctttacttggaagtagtacagcggaacagctatgcggg
taaatgatagttgagcatgggatgttgttcacatatggagaatcttgggc
atatctccatgatctaaatacagtagaaggtttgtaaggagaacacagac
aatgaagcactacttcatagttaggtgtataatactcaaaagatttttta
atatgtaggacaatatgtcagtgctgtggttgttgtagttttaaatatta
catttatggcttatgatattaataattattttaaaaaacataaaagtcac
aaattttaaatattagagattttactttactcatggttgaaattttatgt
gccacccaattttgagaacaatcaaaaagtaatgattctaaaaatgtaaa
ataaatacatatcagagtaagcaggttgattttaatattcatctttcagt
tgggacttaacaaatatagatgctgaagaagatctaaattgtggacctgg
tatattgtaaatatctctaattttgtcaagtaatgaactggtttatacta
tcacatattgcatagtttccttattgtatcacaaatgaaaattacttagt
aatataaagaaaatatgtgaaatatatagatgagggaaatatgaaatcat
cgacctaaaagcaaaaggttgtaagtaatctggatgaatgaaa

gaattcctattatgtactcaaaaagaatacatgagccctgaaaatttagg
taaaatactgctttttcaagaactttagtttaatgcaaaagagattaatg
ctcattagctaataactgattagaaattatttgtaggtgggacatttaat
ttcatactgcataactcatttaacttttctagtgtttgtaaactttagaa
ttttgaaaaagttagaaaaatacatttttaccagcctagacacatgattt
atcaatatttttcagtgttgaaaagtattacaatctcacatatggtagaa
atctgtattaacaaatataacagtgtttataaagtaacttatttcaaatg
tattaatttacatttactgggaataattatatattttccattttattttt
ttaatgctctgctatagatcattgggaggataatgattcactgtggtcaa
gattttttttttaaattggtttttccagacagggtttctctgtgtagccc
tggccgtcatggaactcactgtatagaccaggctggccttaaactcagac
atctgcctgcctctgcctccaaagtgctggtattaaaggcatgtgccacc
actgccccgtttgccatcaagatcttggttatgttaaacctatgaggaca
ggtagcttattaaggcataaagtttttgagttttttatttatggcctaat
acaactaaaattccaatatgccatcctagctaagacacacctaatacaac
aagtatttaggtttacatttatgatagcaactttaaaaggaaaataaaca
gaaataaataaatgaaagtaagatatttgttcaccatgatcaagtaggct
tcatcccagggatgcagaggtggtttaatgtacagaaatccatcaaggta
attcactgtataaggaaactcagaggaaaaaaatcatctaattaaatgct
gaaaaagatttcaacaaagtacactcccattttgttaaaatattggagaa
atcagaaatttaaagtccatacttaacattattaaaagccatacacagca
aactataccccaacatcaactaaataagagaaactgcagcaattccatta
aaatagggactgatatgcctgctcactgtccctatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_149746883_149748040
seq2: B6Ng01-247E23.b_45_1187 (reverse)

seq1  TTTCATTCAT-CAGATTTAATTTTACCAACTTTTTGCTTTTTAGTCTGAT  49
      |||||||||| ||||||  | ||   |||| ||||||||||  ||| |||
seq2  TTTCATTCATCCAGATT--ACTT--ACAACCTTTTGCTTTTAGGTC-GAT  45

seq1  GATTTCATAATT-CCTCATTCTATATATTTCACATTATTTTCTTTATATT  98
      ||||||||| || ||||| ||||||||||||||| |||||||||||||||
seq2  GATTTCATATTTCCCTCA-TCTATATATTTCACA-TATTTTCTTTATATT  93

seq1  ACTAAAGTAATTTTTCATTTGGTGATACCAATAAGGGAAACTATGCAATA  148
      ||| |||||| ||||||||| |||||| |||||| |||||||||||||||
seq2  ACT-AAGTAA-TTTTCATTT-GTGATA-CAATAA-GGAAACTATGCAATA  138

seq1  TGTGATTAGTATAAAACCAGTTCATTACTTGACAAAATTAGAGATATTTT  198
      ||||| |||||| ||||||||||||||||||||||||||||||||| |||
seq2  TGTGA-TAGTAT-AAACCAGTTCATTACTTGACAAAATTAGAGATA-TTT  185

seq1  ACAATATACCAGGTCCACAATTTAGATTCTTCTTTCAGCATCTATATTTG  248
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  ACAATATACCAGGTCCACAATTTAGA-TCTTC-TTCAGCATCTATATTTG  233

seq1  TTAAGTCCCAACTGAAAGATGAATATTAAAATCAACCTGCTTACTCTGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCCCAACTGAAAGATGAATATTAAAATCAACCTGCTTACTCTGAT  283

seq1  ATGTATTTATTTTACATTTTTAGAATCATTACTTTTTGATTGTTCTCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTATTTTACATTTTTAGAATCATTACTTTTTGATTGTTCTCAAA  333

seq1  ATTGGGTGGCACATAAAATTTCAACCATGAGTAAAGTAAAATCTCTAATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTGGCACATAAAATTTCAACCATGAGTAAAGTAAAATCTCTAATA  383

seq1  TTTAAAATTTGTGACTTTTATGTTTTTTAAAATAATTATTAATATCATAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTTGTGACTTTTATGTTTTTTAAAATAATTATTAATATCATAA  433

seq1  GCCATAAATGTAATATTTAAAACTACAACAACCACAGCACTGACATATTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAATGTAATATTTAAAACTACAACAACCACAGCACTGACATATTG  483

seq1  TCCTACATATTAAAAAATCTTTTGAGTATTATACACCTAACTATGAAGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACATATTAAAAAATCTTTTGAGTATTATACACCTAACTATGAAGTA  533

seq1  GTGCTTCATTGTCTGTGTTCTCCTTACAAACCTTCTACTGTATTTAGATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCATTGTCTGTGTTCTCCTTACAAACCTTCTACTGTATTTAGATC  583

seq1  ATGGAGATATGCCCAAGATTCTCCATATGTGAACAACATCCCATGCTCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATATGCCCAAGATTCTCCATATGTGAACAACATCCCATGCTCAA  633

seq1  CTATCATTTACCCGCATAGCTGTTCCGCTGTACTACTTCCAAGTAAAGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATTTACCCGCATAGCTGTTCCGCTGTACTACTTCCAAGTAAAGCA  683

seq1  ATACTACTAAATCATGCAAGAATTGTGAAATATATATAAACCATGAAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACTAAATCATGCAAGAATTGTGAAATATATATAAACCATGAAACT  733

seq1  CATAATTTAAACTTCTAGGTTTTCCATGTTAACTATTTTATTAGTGTACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTAAACTTCTAGGTTTTCCATGTTAACTATTTTATTAGTGTACA  783

seq1  TTTTTATAATCAGTTTGACAATAGGGATAGTTTTACATAAAATTTGTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAATCAGTTTGACAATAGGGATAGTTTTACATAAAATTTGTGTT  833

seq1  TGTTGGTATACTTGCTTTTAACACAATAAACCTAAAACAAATAATACCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTATACTTGCTTTTAACACAATAAACCTAAAACAAATAATACCAA  883

seq1  AGCATGAATCCATTGTTTGAAAGTATATTTCAAAACATAGAATTTTATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAATCCATTGTTTGAAAGTATATTTCAAAACATAGAATTTTATTT  933

seq1  AATCATTATACAAAATCTGGCAGATAAACACACATTCTCATTAACTTATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTATACAAAATCTGGCAGATAAACACACATTCTCATTAACTTATA  983

seq1  TGTATTTTCATAAAGTCTTATCAAAGTATAATATATTCATAAAGTGTTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTCATAAAGTCTTATCAAAGTATAATATATTCATAAAGTGTTAT  1033

seq1  TAAAAGAATGAAAAGTAATATTACCATAACTATACTTATTTGTAAAGAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAATGAAAAGTAATATTACCATAACTATACTTATTTGTAAAGAAT  1083

seq1  GTCTGGCATTATGTGCTGTTTGTTTGCTTTGTACTTTTAAGAGAAAGGCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCATTATGTGCTGTTTGTTTGCTTTGTACTTTTAAGAGAAAGGCA  1133

seq1  TTCAGAATTC  1158
      ||||||||||
seq2  TTCAGAATTC  1143


seq1: chr1_149643442_149644587
seq2: B6Ng01-247E23.g_67_1204

seq1  GAATTCCTATTATGTACTCAAAAAGAATACATGAGCCCTGAAAATTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTATGTACTCAAAAAGAATACATGAGCCCTGAAAATTTAGG  50

seq1  TAAAATACTGCTTTTTCAAGAACTTTAGTTTAATGCAAAAGAGATTAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACTGCTTTTTCAAGAACTTTAGTTTAATGCAAAAGAGATTAATG  100

seq1  CTCATTAGCTAATAACTGATTAGAAATTATTTGTAGGTGGGACATTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAGCTAATAACTGATTAGAAATTATTTGTAGGTGGGACATTTAAT  150

seq1  TTCATACTGCATAACTCATTTAACTTTTCTAGTGTTTGTAAACTTTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTGCATAACTCATTTAACTTTTCTAGTGTTTGTAAACTTTAGAA  200

seq1  TTTTGAAAAAGTTAGAAAAATACATTTTTACCAGCCTAGACACATGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAAAGTTAGAAAAATACATTTTTACCAGCCTAGACACATGATTT  250

seq1  ATCAATATTTTTCAGTGTTGAAAAGTATTACAATCTCACATATGGTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATTTTTCAGTGTTGAAAAGTATTACAATCTCACATATGGTAGAA  300

seq1  ATCTGTATTAACAAATATAACAGTGTTTATAAAGTAACTTATTTCAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTATTAACAAATATAACAGTGTTTATAAAGTAACTTATTTCAAATG  350

seq1  TATTAATTTACATTTACTGGGAATAATTATATATTTTCCATTTTATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTACATTTACTGGGAATAATTATATATTTTCCATTTTATTTTT  400

seq1  TTAATGCTCTGCTATAGATCATTGGGAGGATAATGATTCACTGTGGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTCTGCTATAGATCATTGGGAGGATAATGATTCACTGTGGTCAA  450

seq1  GATTTTTTTTTTAAATTGGTTTTTCCAGACAGGGTTTCTCTGTGTAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTTTAAATTGGTTTTTCCAGACAGGGTTTCTCTGTGTAGCCC  500

seq1  TGGCCGTCATGGAACTCACTGTATAGACCAGGCTGGCCTTAAACTCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGTCATGGAACTCACTGTATAGACCAGGCTGGCCTTAAACTCAGAC  550

seq1  ATCTGCCTGCCTCTGCCTCCAAAGTGCTGGTATTAAAGGCATGTGCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTGCCTCTGCCTCCAAAGTGCTGGTATTAAAGGCATGTGCCACC  600

seq1  ACTGCCCCGTTTGCCATCAAGATCTTGGTTATGTTAAACCTATGAGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCCGTTTGCCATCAAGATCTTGGTTATGTTAAACCTATGAGGACA  650

seq1  GGTAGCTTATTAAGGCATAAAGTTTTTGAGTTTTTTATTTATGGCCTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTTATTAAGGCATAAAGTTTTTGAGTTTTTTATTTATGGCCTAAT  700

seq1  ACAACTAAAATTCCAATATGCCATCCTAGCTAAGACACACCTAATACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAAAATTCCAATATGCCATCCTAGCTAAGACACACCTAATACAAC  750

seq1  AAGTATTTAGGTTTACATTTATGATAGCAACTTTAAAAGGAAAATAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTAGGTTTACATTTATGATAGCAACTTTAAAAGGAAAATAAACA  800

seq1  GAAATAAATAAATGAAAGTAAGATATTTGTTCACCATGATCAAGTAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATAAATGAAAGTAAGATATTTGTTCACCATGATCAAGTAGGCT  850

seq1  TCATCCCAGGGATGCAGAGGTGGTTTAATGTACAGAAATCCATCAAGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCAGGGATGCAGAGGTGGTTTAATGTACAGAAATCCATCAAGGTA  900

seq1  ATTCACTGTATAAGGAAACTCAGAGGAAAAAAATCATCTAATTAAATGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGTATAAGGAAACTCAGAGGAAAAAAATCATCTAATTAAATGCT  950

seq1  GAAAAAGATTTC-ACAAAGTACAACTCCCATTTTGTTAAAAATATTGGAG  999
      |||||||||||| ||||||||| |||||||||||||| ||||||||||||
seq2  GAAAAAGATTTCAACAAAGTAC-ACTCCCATTTTGTT-AAAATATTGGAG  998

seq1  AAATCAGAAATTTAAAGTCCATACTTAAACATATTAAAAGCAATACACAG  1049
      ||||||||||||||||||||||||||||   |||||||||| ||||||||
seq2  AAATCAGAAATTTAAAGTCCATACTTAACATTATTAAAAGCCATACACAG  1048

seq1  CAAACTAATACCCAACATCAAACTAAATAAAGAGAAACTGGAAGCAATTC  1099
      |||||||   ||||||||| |||||||| |||||||||| | ||||||||
seq2  CAAACTATACCCCAACATC-AACTAAAT-AAGAGAAACT-GCAGCAATTC  1095

seq1  CATTAAAATAAGGGACTGAATAATGCTGCTCACTGTTCCTCTATGAT  1146
      ||||||||| |||||||| |||   |||||||||||  | |||||||
seq2  CATTAAAAT-AGGGACTG-ATATGCCTGCTCACTGT--CCCTATGAT  1138


| Home | SequenceCutter | Blast | Download |