BAC Information

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BAC

Clone NameB6Ng01-247H15
Chromosome1 (Build37)
Map Location 189,705,935 - 189,877,384
singlet/doubletdoublet
Overlap geneEsrrg, 9330162B11Rik
Upstream geneLOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
Downstream geneUsh2a, Kctd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247H15.bB6Ng01-247H15.g
ACCGA055802GA055803
length1,129311
definitionB6Ng01-247H15.b B6Ng01-247H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(189,876,271 - 189,877,384)(189,705,935 - 189,706,245)
sequence
gaattctttctctttccttctagtggacactctaatctgctccaactcca
cttatctatagctaagtttggctttgtggaagaaagaattgtgtcattct
agaaaagcaagcgtcttcaagctacagagcataaagctttaccctacagc
acttaatgtgtgctgaagcttcttctcagaggtctaattagttaggacga
gtcaagcaggctctggtggggacggagatatcgctacaagttcaaagcta
ctcagcaaacctttgtcttaaaaacgaagacaaacaaacaaaaaaactct
ggaaataatgtgcctataaacttctcaggaggctgagcgttgaggcagag
ggatttctgcaagttcaaaatcaggctaggtgtgaaattttgcctcaaag
aacccaatgataatacatttttaaaaagacttgttttctaatcaagggag
gtcaaggagagctctccccttgtcaacaaaggtactggttcctttgtttg
agtttatcaagtaatcaaacaatcaactcagcctcagcagccaccactat
caccagataatactgattacagcggcagatgctaggggaaagtccactca
actgcaggcaaagtatcagatcacctcactccctgagaaagcctaatacc
aggacaaaaattctacttggcaaactggccaggattgaagtgagccacga
agtccctgagagttggagtcaggtggggctgcaccaggctaaagtagcag
agctctggaggagctttagcataaacgagaaagagaacggctgcttcctc
ccagggagagagtctcacaggcagggcatggaagaagatagggttaggga
aggaaacaaatcgcctggtagctccaggcccagaacttgatcagagtttc
taaccagagatttgggtaaagaaagttcaccaagaatgaatgagagtgct
gcgggatgcacattttgtacattatttaacaacaaaaaacataaataaaa
aggtctggagggacagccatgctcagcggtttagagcctgtgcttgtttt
ttatgggaggaccttgggttgattctccagagccccattatgcatatgtt
aaagaataattaattactagtgaacagct

ctgtactctctcccaggacaaggagggcacataaggcaatgctcagcaga
tggctggcctctggagctataaggaagatatttagaagctgggggtgttg
ctcagtgggtagagtgctggccttgcatgcactgagccctggattcaagc
tccagcatccccaggattacagatataggggtgtgtgcctgtgatcccag
tgttccggacgcacaggctggaggtcagaagtccaagtcatcctcagctc
catagccagtttgtggttagcctgggatgtagggggtggggctgaggagt
tggggagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189876271_189877384
seq2: B6Ng01-247H15.b_47_1175 (reverse)

seq1  AGCTG-TCACTAGTAATAAATTA-TCTTT-ACATATGCATA--TGGGCTC  45
      ||||| ||||||||||| ||||| ||||| |||||||||||   ||||||
seq2  AGCTGTTCACTAGTAATTAATTATTCTTTAACATATGCATAATGGGGCTC  50

seq1  TGG-GAATCAAACCCAGGTCCT-CCATAAAAA--CAGCACAGGCTCTTAA  91
      ||| ||||||| || ||||||| |||||||||   |||||||||||| ||
seq2  TGGAGAATCAACCCAAGGTCCTCCCATAAAAAACAAGCACAGGCTCTAAA  100

seq1  CCGCTGAGC-TGGCTGTCCCTCCGGCCTTTTTTATTTATG-TTTTTGTTG  139
      ||||||||| ||||||||||||| | | |||||||||||| |||||||||
seq2  CCGCTGAGCATGGCTGTCCCTCCAGACCTTTTTATTTATGTTTTTTGTTG  150

seq1  TTAAAT-ATGTAC-AAATGTGCAT-CCGCAGCACTCTCATTCATTCTT-G  185
      |||||| |||||| |||||||||| ||||||||||||||||||||||| |
seq2  TTAAATAATGTACAAAATGTGCATCCCGCAGCACTCTCATTCATTCTTGG  200

seq1  TGAACTTTCTTTAACCAAATCTCTGGTTAGAAACTCTGATCAAGTTCTGG  235
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTCTTTACCCAAATCTCTGGTTAGAAACTCTGATCAAGTTCTGG  250

seq1  GCCTGGAGCTACCAGGCGATTTGTTTCCTTCCCTAACCCTATCTTCTTCC  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAGCTACCAGGCGATTTGTTTCCTTCCCTAACCCTATCTTCTTCC  300

seq1  ATGCCCTGCCTGTGAGACTCTCTCCCTGGGAGGAAGCAGCCGTTCTCTTT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTGCCTGTGAGACTCTCTCCCTGGGAGGAAGCAGCCGTTCTCTTT  350

seq1  CTCGTTTATGCTAAAGCTCCTCCAGAGCTCTGCTACTTTAGCCTGGTGCA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTTATGCTAAAGCTCCTCCAGAGCTCTGCTACTTTAGCCTGGTGCA  400

seq1  GCCCCACCTGACTCCAACTCTCAGGGACTTCGTGGCTCACTTCAATCCTG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACCTGACTCCAACTCTCAGGGACTTCGTGGCTCACTTCAATCCTG  450

seq1  GCCAGTTTGCCAAGTAGAATTTTTGTCCTGGTATTAGGCTTTCTCAGGGA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTTGCCAAGTAGAATTTTTGTCCTGGTATTAGGCTTTCTCAGGGA  500

seq1  GTGAGGTGATCTGATACTTTGCCTGCAGTTGAGTGGACTTTCCCCTAGCA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTGATCTGATACTTTGCCTGCAGTTGAGTGGACTTTCCCCTAGCA  550

seq1  TCTGCCGCTGTAATCAGTATTATCTGGTGATAGTGGTGGCTGCTGAGGCT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCGCTGTAATCAGTATTATCTGGTGATAGTGGTGGCTGCTGAGGCT  600

seq1  GAGTTGATTGTTTGATTACTTGATAAACTCAAACAAAGGAACCAGTACCT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGATTGTTTGATTACTTGATAAACTCAAACAAAGGAACCAGTACCT  650

seq1  TTGTTGACAAGGGGAGAGCTCTCCTTGACCTCCCTTGATTAGAAAACAAG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGACAAGGGGAGAGCTCTCCTTGACCTCCCTTGATTAGAAAACAAG  700

seq1  TCTTTTTAAAAATGTATTATCATTGGGTTCTTTGAGGCAAAATTTCACAC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAAAAATGTATTATCATTGGGTTCTTTGAGGCAAAATTTCACAC  750

seq1  CTAGCCTGATTTTGAACTTGCAGAAATCCCTCTGCCTCAACGCTCAGCCT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTGATTTTGAACTTGCAGAAATCCCTCTGCCTCAACGCTCAGCCT  800

seq1  CCTGAGAAGTTTATAGGCACATTATTTCCAGAGTTTTTTTGTTTGTTTGT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAAGTTTATAGGCACATTATTTCCAGAGTTTTTTTGTTTGTTTGT  850

seq1  CTTCGTTTTTAAGACAAAGGTTTGCTGAGTAGCTTTGAACTTGTAGCGAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTTTTTAAGACAAAGGTTTGCTGAGTAGCTTTGAACTTGTAGCGAT  900

seq1  ATCTCCGTCCCCACCAGAGCCTGCTTGACTCGTCCTAACTAATTAGACCT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCGTCCCCACCAGAGCCTGCTTGACTCGTCCTAACTAATTAGACCT  950

seq1  CTGAGAAGAAGCTTCAGCACACATTAAGTGCTGTAGGGTAAAGCTTTATG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGAAGCTTCAGCACACATTAAGTGCTGTAGGGTAAAGCTTTATG  1000

seq1  CTCTGTAGCTTGAAGACGCTTGCTTTTCTAGAATGACACAATTCTTTCTT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGCTTGAAGACGCTTGCTTTTCTAGAATGACACAATTCTTTCTT  1050

seq1  CCACAAAGCCAAACTTAGCTATAGATAAGTGGAGTTGGAGCAGATTAGAG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGCCAAACTTAGCTATAGATAAGTGGAGTTGGAGCAGATTAGAG  1100

seq1  TGTCCACTAGAAGGAAAGAGAAAGAATTC  1114
      |||||||||||||||||||||||||||||
seq2  TGTCCACTAGAAGGAAAGAGAAAGAATTC  1129


seq1: chr1_189705935_189706245
seq2: B6Ng01-247H15.g_76_386

seq1  CTGTACTCTCTCCCAGGACAAGGAGGGCACATAAGGCAATGCTCAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTCTCTCCCAGGACAAGGAGGGCACATAAGGCAATGCTCAGCAGA  50

seq1  TGGCTGGCCTCTGGAGCTATAAGGAAGATATTTAGAAGCTGGGGGTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCCTCTGGAGCTATAAGGAAGATATTTAGAAGCTGGGGGTGTTG  100

seq1  CTCAGTGGGTAGAGTGCTGGCCTTGCATGCACTGAGCCCTGGATTCAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGGTAGAGTGCTGGCCTTGCATGCACTGAGCCCTGGATTCAAGC  150

seq1  TCCAGCATCCCCAGGATTACAGATATAGGGGTGTGTGCCTGTGATCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCATCCCCAGGATTACAGATATAGGGGTGTGTGCCTGTGATCCCAG  200

seq1  TGTTCCGGACGCACAGGCTGGAGGTCAGAAGTCCAAGTCATCCTCAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCGGACGCACAGGCTGGAGGTCAGAAGTCCAAGTCATCCTCAGCTC  250

seq1  CATAGCCAGTTTGTGGTTAGCCTGGGATGTAGGGGGTGGGGCTGAGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCAGTTTGTGGTTAGCCTGGGATGTAGGGGGTGGGGCTGAGGAGT  300

seq1  TGGGGAGAAGA  311
      |||||||||||
seq2  TGGGGAGAAGA  311


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