BAC Information

Click to search

BAC

Clone NameB6Ng01-247I07
Chromosome1 (Build37)
Map Location 141,947,701 - 141,948,715
singlet/doubletsinglet
Overlap genenone
Upstream geneDennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367
Downstream geneCfh, Kcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247I07.bB6Ng01-247I07.g
ACCGA055832GA055833
length1,1731,115
definitionB6Ng01-247I07.b B6Ng01-247I07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatggaattaatgaaacttatggaacacaacaaatgcagtgcga
agaggaaaatccatagcactaactgccttcataaggaaatgagtgagatg
tcagtataccagcaacttaacagcatgcctgaaagctgtataacaaaaag
aagcaaacacactcaagaggagtaaagggcagggtatattcaaaatgaag
ggtgaaattaatcaattagaaacagagaacaaaacaaagaatcacaaaac
agaagagttggttctttgagaaaatcaataagaaagacaaacagctaata
taatgaatagacagggtgacagtattcaaattaacaaaatcagaaatgaa
atgggggaatgtaacatcagacactgaggaaatccaaatgaatcagttgg
tctttcttcaaaatcctgtatgtagaaaattggaaaatctaaacaaaatt
aatgactttcttgatatatgccacttctcaaagttaaatcacgatgagat
agacaatttaaatagactgataacccataaagaaatagaagcaatcttta
aaactataaaccaaaaacagcccagggccagatgggtttagatcagaatt
taccagactttgactgaaccactcatacgtgtactccccaaagtgtgcct
gcttatgtgagcactgagggaggcagtccaaagcaaaaatgagctgtaga
catgtctaatcctcaaaggtctcatcttaagacttgcaggagtacaacta
gtccctccttctacttgggcctgcatgtccagatgcatgtagtctgtgag
actccccacatctgccatcatataggtagtcacgtggcctggtggccaaa
ttactggactaacttgctttcttcctttaatgacatgtacagaaagcacc
tgtagttcctctttatgcaaatgagcattctcagcacctcagatttaggc
aattaagtatattcacctccctcaacttctaccctttccccaaggctaat
atatctttgttatccccccacccaaaaacaaagcctttcactctaaaaca
tctcagaagaatgtcatttctcccccaacactactgctatgcagatcctg
ggaatgcagccaacatgcttaacctcattccttttaatgtgccaaggtac
acaatggtaggcttgaacaaaat

gaattctcagtgtgattaatacatatacaatacaacttctgtgcccaaga
ctttcaggactcaaagggaggaaacttagatgaaatgccccaacagtagg
gagagggaacttatagagcctacctccagcaggaaagcaggacatcaagt
gagggatggggttgacatcacacagtcacaaatttgacccgtaattgttc
ctgtctcaaagaattacaggtatggaaatggagaggagcctgaggaaaag
aaggtccagcgacaggcctaaagtggtaaccagctcaaggggaagtccca
agacctgacactattactgaggctaaggagcactcacaaaaagggatcta
tcatgactaccctccagaagacccaacaagcagctgaaagagtcagatgc
agatatttatacccaaccaatggacagaagcagctgatccctgttgttga
attggggaaagctgaaagaagctgtggagaatggtgaccaggtagaagga
ccagcattctcaattaatctggacccctgagatctctcaaagactggacc
accaaacaggcagcatacaccagctgatatgaggcccccgacacacatac
agtagaggacttcctggtctgtgttcattcagagatgatgcacctaacct
aagagactggaggcttcagtgagtttaaaggtcaggggttggggagttgg
gatatctatgtgaagacagagatgtgggaaggaggaatgcagtgtggaac
agtctgagggtggacgggagggggagtaaaatatagagtgtaaaaaatta
attaattaatttaattaataaaaaagagaaaagatatattttttaaaagc
cagagggatcagaatcactattttgagatgggtatcctcttagacaacat
tggagtgggtgttctatacatttaaccatatgggttgcctgcacaagaac
ttcccaagttgacacgagatcatgaaaagggaaaacttaaaaaaattcac
aaggcctagcctaagatgaagtgtaaggcacttgatgggctcgattaatc
agttgtctcaggcacataaccttccttatagctttttccatctagaatgg
tcacaccataatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_141947701_141948715
seq2: B6Ng01-247I07.b_196_1216

seq1  GCAAACACACTCAAGAGGAGTAAAGGGCAGGGTATATTCAAAATGAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACACTCAAGAGGAGTAAAGGGCAGGGTATATTCAAAATGAAGGG  50

seq1  TGAAATTAATCAATTAGAAACAGAGAACAAAACAAAGAATCACAAAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTAATCAATTAGAAACAGAGAACAAAACAAAGAATCACAAAACAG  100

seq1  AAGAGTTGGTTCTTTGAGAAAATCAATAAGAAAGACAAACAGCTAATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGGTTCTTTGAGAAAATCAATAAGAAAGACAAACAGCTAATATA  150

seq1  ATGAATAGACAGGGTGACAGTATTCAAATTAACAAAATCAGAAATGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAGACAGGGTGACAGTATTCAAATTAACAAAATCAGAAATGAAAT  200

seq1  GGGGGAATGTAACATCAGACACTGAGGAAATCCAAATGAATCAGTTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAATGTAACATCAGACACTGAGGAAATCCAAATGAATCAGTTGGTC  250

seq1  TTTCTTCAAAATCCTGTATGTAGAAAATTGGAAAATCTAAACAAAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCAAAATCCTGTATGTAGAAAATTGGAAAATCTAAACAAAATTAA  300

seq1  TGACTTTCTTGATATATGCCACTTCTCAAAGTTAAATCACGATGAGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCTTGATATATGCCACTTCTCAAAGTTAAATCACGATGAGATAG  350

seq1  ACAATTTAAATAGACTGATAACCCATAAAGAAATAGAAGCAATCTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTAAATAGACTGATAACCCATAAAGAAATAGAAGCAATCTTTAAA  400

seq1  ACTATAAACCAAAAACAGCCCAGGGCCAGATGGGTTTAGATCAGAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAACCAAAAACAGCCCAGGGCCAGATGGGTTTAGATCAGAATTTA  450

seq1  CCAGACTTTGACTGAACCACTCATACGTGTACTCCCCAAAGTGTGCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTTTGACTGAACCACTCATACGTGTACTCCCCAAAGTGTGCCTGC  500

seq1  TTATGTGAGCACTGAGGGAGGCAGTCCAAAGCAAAAATGAGCTGTAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGAGCACTGAGGGAGGCAGTCCAAAGCAAAAATGAGCTGTAGACA  550

seq1  TGTCTAATCCTCAAAGGTCTCATCTTAAGACTTGCAGGAGTACAACTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATCCTCAAAGGTCTCATCTTAAGACTTGCAGGAGTACAACTAGT  600

seq1  CCCTCCTTCTACTTGGGCCTGCATGTCCAGATGCATGTAGTCTGTGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTCTACTTGGGCCTGCATGTCCAGATGCATGTAGTCTGTGAGAC  650

seq1  TCCCCACATCTGCCATCATATAGGTAGTCACGTGGCCTGGTGGCCAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACATCTGCCATCATATAGGTAGTCACGTGGCCTGGTGGCCAAATT  700

seq1  ACTGGACTAACTTGCTTTCTTCCTTTAATGACATGTACAGAAAGCACCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACTAACTTGCTTTCTTCCTTTAATGACATGTACAGAAAGCACCTG  750

seq1  TAGTTCCTCTTTATGCAAATGAGCATTCTCAGCACCTCAGATTTAGGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCTCTTTATGCAAATGAGCATTCTCAGCACCTCAGATTTAGGCAA  800

seq1  TTAAGTATATTCACCTCCCTCAACTTCTACCCTTTCCCCAAGGCTAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATATTCACCTCCCTCAACTTCTACCCTTTCCCCAAGGCTAATAT  850

seq1  ATCTTTTGTTAT-CCCCCACCC-AAAACAAAGCCCTTTCACTCTAAACCA  898
      ||| |||||||| ||||||||| ||||||||| |||||||||||||| ||
seq2  ATC-TTTGTTATCCCCCCACCCAAAAACAAAG-CCTTTCACTCTAAAACA  898

seq1  TCTCAG-AGAATGTCATTTCTCCCC--ACACTTACTGCTATGCAAGATCC  945
      |||||| ||||||||||||||||||  |||| ||||||||||| ||||||
seq2  TCTCAGAAGAATGTCATTTCTCCCCCAACAC-TACTGCTATGC-AGATCC  946

seq1  T-GGAATGCAG-CAACATGCTAAACTTCATTCCTTTTAGTGTGGC-AGGT  992
      | ||||||||| ||||||||| ||| |||||||||||| |||| | ||||
seq2  TGGGAATGCAGCCAACATGCTTAACCTCATTCCTTTTAATGTGCCAAGGT  996

seq1  ACACAATGGTAG--CTGGACAAAAT  1015
      ||||||||||||   || |||||||
seq2  ACACAATGGTAGGCTTGAACAAAAT  1021


| Home | SequenceCutter | Blast | Download |