BAC Information

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BAC

Clone NameB6Ng01-247J16
Chromosome1 (Build37)
Map Location 50,581,783 - 50,711,974
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247J16.bB6Ng01-247J16.g
ACCGA055895GA055896
length1,1041,154
definitionB6Ng01-247J16.b B6Ng01-247J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,710,863 - 50,711,974)(50,581,783 - 50,582,943)
sequence
gaattcctgatctttccaaggcttttatcacgaatgggtgttagattttg
tcaaattctttctctgcatctagagagatgatcatgtggtttttttcttt
gagtttctttatatagtggattaagttgatggatttccacatattaatcc
atccctgcacccctggaatgaaacctacttggtcaggatggatgattgtt
ttgatgtgttctttgattcagttagcgagaattttactgagtatttttgc
atcgatattcataagggaattggtctgaagttctctatctttgttaatac
agatattcttaactcccttgaccacccaataaaaggaaatcatgtgtacc
ggctactgtgggaaagagatgtacggatagtcttcctctgttgtgaagct
aatattgtgactgaatgaaataaattgtgtcactcatcttttgttggctt
ctggatttagagactctaaggaagttattttctgtaagaatttgacagtc
ccagtttgaataggatttttgctgcttggttacaagtgttaggagtggta
agaaaggaggattggtccaatcagtagttccagaaggtatttgatcacat
caaacagtgaaggagtaaatattcagctatgcaatgaattctgactcttt
tgcacgttgtatcccatagtattttgttccaaatgctagaaaagtgaagg
aaatgcttgaacctcactcattaaggagcatgcatttaattttgctaagt
aaacactagattaactatgattaggttaaatatgactaactgaaggaaga
acccaacatcatgggtaaaatgagcaagatatctacatgtctgtgtccta
gaattcttctccagacacataataaatcatgttctaattctgaaatgtga
tttccttatttagttattaaagctagcaaaaaataggttaatgagtatta
tcagtgacacacatatatgtacattaaacactttcaatctgtatgccact
tacacataggtgatcctacgaactgataagcaacatgctgctcatacagc
acttctagatgcccactcagattatattttcaatgtttatttctagcaaa
taga

gaattctttcctctaggaactgggatatttttgtgcccaactgttacact
ctacaagggcaaactctgtattaagataaaaaggtggtatgctggtggat
tctgtcaatctgacacaaacttgtctgaggcatcttgacaaagagactct
caattcaggaaaagtttccatcagattagcctgtcaacaagtgtatgggg
gcattttcttgattgatgattgatgtaagagggcctcccctccttgctac
cagttgattgtgctacctctgagtaggttgtccagtggtttataggaaag
caagctcaatgcccagtgcctccctccaggtatctttgatagctttgctc
atgtgacctgggaaatgtgtgtgccaaaaataaacacaaaaacaaaaaca
acatgttctccatagtgttttgccatagtaaaagtcaaagtaaaacacat
gggttatctggttcatttattttctgctgcacttttttttctttttttta
atgtgaagaaaagtggtttattaggcatatttatatagtcagtccttctg
taattttcaagtattcacttcttttcattttaactgaagatagttaaatg
gttatttgactaagaatgactttcaatttctatgttcacctctacttgaa
taattaaatgaagactaaagaaaggattaccaagttcccatttcattaat
tgaaggtgggggtttcatgataaacaaagaccaagtaaaaggagtaaaaa
ttactgttgggtgtccctatgctttataagaaattcattatgaattagaa
ttaaaatgtagtttaaatagtgagcactgacattctgagctatttcattc
atttcaaatccaattcttaaaaccctgtaactgcatttccaaggcactac
aagtcctgacaataacctttctccagaaaataatttcagtcagcattatc
attcaatgtaaccaggaataagcagaaatccactttgaaatgtcctccac
agagctgaagatgaattcaaggagatacaaaatgcaaaatgtgtagatga
ggttgactttgacactactgatctgaatgagtagtttgtctctacataga
tcctcactgatggaatgagacaggaatgagctggtaatgtgtgtcgcctt
atct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50710863_50711974
seq2: B6Ng01-247J16.b_45_1148 (reverse)

seq1  TCTATTTTGCTAAGGAATAAACATTTGGAAAATATAATCTGAAGTGGGCA  50
      |||| |||||| || ||||||||||  |||||||||||||| ||||||||
seq2  TCTA-TTTGCT-AGAAATAAACATT--GAAAATATAATCTG-AGTGGGCA  45

seq1  TCTAGAAGTTGCTGTATGAGCAGCATGTTGCTTATCAGTTCGTAAGGATC  100
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  TCTAGAAG-TGCTGTATGAGCAGCATGTTGCTTATCAGTTCGT-AGGATC  93

seq1  ACCTATGTGTAAGTGGCATACAGATTG-AAGTGTTTAATGTACATATATG  149
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACCTATGTGTAAGTGGCATACAGATTGAAAGTGTTTAATGTACATATATG  143

seq1  TGTGTCACCTGATAATACTCATTAACCTATTTTTTGCTAGCTTTAAATAA  199
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGTCA-CTGATAATACTCATTAACCTATTTTTTGCTAGCTTT-AATAA  191

seq1  CTAAATAAGGAAATCACATTTCAGAATTAGAACATGATTTATTATGTGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAAGGAAATCACATTTCAGAATTAGAACATGATTTATTATGTGTC  241

seq1  TGGAGAAGAATTCTAGGACACAGACATGTAGATATCTTGCTCATTTTACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGAATTCTAGGACACAGACATGTAGATATCTTGCTCATTTTACC  291

seq1  CATGATGTTGGGTTCTTCCTTCAGTTAGTCATATTTAACCTAATCATAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTTGGGTTCTTCCTTCAGTTAGTCATATTTAACCTAATCATAGT  341

seq1  TAATCTAGTGTTTACTTAGCAAAATTAAATGCATGCTCCTTAATGAGTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAGTGTTTACTTAGCAAAATTAAATGCATGCTCCTTAATGAGTGA  391

seq1  GGTTCAAGCATTTCCTTCACTTTTCTAGCATTTGGAACAAAATACTATGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAAGCATTTCCTTCACTTTTCTAGCATTTGGAACAAAATACTATGG  441

seq1  GATACAACGTGCAAAAGAGTCAGAATTCATTGCATAGCTGAATATTTACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAACGTGCAAAAGAGTCAGAATTCATTGCATAGCTGAATATTTACT  491

seq1  CCTTCACTGTTTGATGTGATCAAATACCTTCTGGAACTACTGATTGGACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTGTTTGATGTGATCAAATACCTTCTGGAACTACTGATTGGACC  541

seq1  AATCCTCCTTTCTTACCACTCCTAACACTTGTAACCAAGCAGCAAAAATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCTTTCTTACCACTCCTAACACTTGTAACCAAGCAGCAAAAATC  591

seq1  CTATTCAAACTGGGACTGTCAAATTCTTACAGAAAATAACTTCCTTAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAAACTGGGACTGTCAAATTCTTACAGAAAATAACTTCCTTAGAG  641

seq1  TCTCTAAATCCAGAAGCCAACAAAAGATGAGTGACACAATTTATTTCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAATCCAGAAGCCAACAAAAGATGAGTGACACAATTTATTTCATT  691

seq1  CAGTCACAATATTAGCTTCACAACAGAGGAAGACTATCCGTACATCTCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACAATATTAGCTTCACAACAGAGGAAGACTATCCGTACATCTCTT  741

seq1  TCCCACAGTAGCCGGTACACATGATTTCCTTTTATTGGGTGGTCAAGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGTAGCCGGTACACATGATTTCCTTTTATTGGGTGGTCAAGGGA  791

seq1  GTTAAGAATATCTGTATTAACAAAGATAGAGAACTTCAGACCAATTCCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAATATCTGTATTAACAAAGATAGAGAACTTCAGACCAATTCCCT  841

seq1  TATGAATATCGATGCAAAAATACTCAGTAAAATTCTCGCTAACTGAATCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATATCGATGCAAAAATACTCAGTAAAATTCTCGCTAACTGAATCA  891

seq1  AAGAACACATCAAAACAATCATCCATCCTGACCAAGTAGGTTTCATTCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACATCAAAACAATCATCCATCCTGACCAAGTAGGTTTCATTCCA  941

seq1  GGGGTGCAGGGATGGATTAATATGTGGAAATCCATCAACTTAATCCACTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCAGGGATGGATTAATATGTGGAAATCCATCAACTTAATCCACTA  991

seq1  TATAAAGAAACTCAAAGAAAAAAACCACATGATCATCTCTCTAGATGCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAAACTCAAAGAAAAAAACCACATGATCATCTCTCTAGATGCAG  1041

seq1  AGAAAGAATTTGACAAAATCTAACACCCATTCGTGATAAAAGCCTTGGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAATTTGACAAAATCTAACACCCATTCGTGATAAAAGCCTTGGAA  1091

seq1  AGATCAGGAATTC  1112
      |||||||||||||
seq2  AGATCAGGAATTC  1104


seq1: chr1_50581783_50582943
seq2: B6Ng01-247J16.g_67_1220

seq1  GAATTCTTTCCTCTAGGAACTGGGATATTTTTGTGCCCAACTGTTACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTCTAGGAACTGGGATATTTTTGTGCCCAACTGTTACACT  50

seq1  CTACAAGGGCAAACTCTGTATTAAGATAAAAAGGTGGTATGCTGGTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGGGCAAACTCTGTATTAAGATAAAAAGGTGGTATGCTGGTGGAT  100

seq1  TCTGTCAATCTGACACAAACTTGTCTGAGGCATCTTGACAAAGAGACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAATCTGACACAAACTTGTCTGAGGCATCTTGACAAAGAGACTCT  150

seq1  CAATTCAGGAAAAGTTTCCATCAGATTAGCCTGTCAACAAGTGTATGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAGGAAAAGTTTCCATCAGATTAGCCTGTCAACAAGTGTATGGGG  200

seq1  GCATTTTCTTGATTGATGATTGATGTAAGAGGGCCTCCCCTCCTTGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCTTGATTGATGATTGATGTAAGAGGGCCTCCCCTCCTTGCTAC  250

seq1  CAGTTGATTGTGCTACCTCTGAGTAGGTTGTCCAGTGGTTTATAGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGATTGTGCTACCTCTGAGTAGGTTGTCCAGTGGTTTATAGGAAAG  300

seq1  CAAGCTCAATGCCCAGTGCCTCCCTCCAGGTATCTTTGATAGCTTTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCAATGCCCAGTGCCTCCCTCCAGGTATCTTTGATAGCTTTGCTC  350

seq1  ATGTGACCTGGGAAATGTGTGTGCCAAAAATAAACACAAAAACAAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCTGGGAAATGTGTGTGCCAAAAATAAACACAAAAACAAAAACA  400

seq1  ACATGTTCTCCATAGTGTTTTGCCATAGTAAAAGTCAAAGTAAAACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTCTCCATAGTGTTTTGCCATAGTAAAAGTCAAAGTAAAACACAT  450

seq1  GGGTTATCTGGTTCATTTATTTTCTGCTGCACTTTTTTTTCTTTTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATCTGGTTCATTTATTTTCTGCTGCACTTTTTTTTCTTTTTTTTA  500

seq1  ATGTGAAGAAAAGTGGTTTATTAGGCATATTTATATAGTCAGTCCTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGAAAAGTGGTTTATTAGGCATATTTATATAGTCAGTCCTTCTG  550

seq1  TAATTTTCAAGTATTCACTTCTTTTCATTTTAACTGAAGATAGTTAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCAAGTATTCACTTCTTTTCATTTTAACTGAAGATAGTTAAATG  600

seq1  GTTATTTGACTAAGAATGACTTTCAATTTCTATGTTCACCTCTACTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGACTAAGAATGACTTTCAATTTCTATGTTCACCTCTACTTGAA  650

seq1  TAATTAAATGAAGACTAAAGAAAGGATTACCAAGTTCCCATTTCATTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATGAAGACTAAAGAAAGGATTACCAAGTTCCCATTTCATTAAT  700

seq1  TGAAGGTGGGGGTTTCATGATAAACAAAGACCAAGTAAAAGGAGTAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTGGGGGTTTCATGATAAACAAAGACCAAGTAAAAGGAGTAAAAA  750

seq1  TTACTGTTGGGTGTCCCTATGCTTTATAAGAAATTCATTATGAATTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTTGGGTGTCCCTATGCTTTATAAGAAATTCATTATGAATTAGAA  800

seq1  TTAAAATGTAGTTTAAATAGTGAGCACTGACATTCTGAGCTATTTCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTAGTTTAAATAGTGAGCACTGACATTCTGAGCTATTTCATTC  850

seq1  ATTTCAAATCCAATTCTTAAAACCCTGTAACTGCATTTCCAAGGCACTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAATCCAATTCTTAAAACCCTGTAACTGCATTTCCAAGGCACTAC  900

seq1  AAGTCCTGACAATAACCTTTCTCCAGAAAATAATTTCAGTCAGCATTATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGACAATAACCTTTCTCCAGAAAATAATTTCAGTCAGCATTATC  950

seq1  ATTCAATGTAACCAGGAATAAGCAGAAATCCAC-TTGAAATGTCCTCCAC  999
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTCAATGTAACCAGGAATAAGCAGAAATCCACTTTGAAATGTCCTCCAC  1000

seq1  AGAGCTGAAAGATGAATTCAAGGAGATACAAAATGCAAAATGTGTAAGAT  1049
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAGCTG-AAGATGAATTCAAGGAGATACAAAATGCAAAATGTGT-AGAT  1048

seq1  GAGGTTTGACTTTGACACTTACTTGATCTGATAGAGTAATTTTGTCTCTA  1099
      |||| ||||||||||||| ||| ||||||||  |||| | ||||||||||
seq2  GAGG-TTGACTTTGACAC-TAC-TGATCTGAATGAGT-AGTTTGTCTCTA  1094

seq1  CATAGAT-CTCACTGTATGAGAAAAGAGAACAGGGATGGAAGCT-GTAA-  1146
      ||||||| ||||||| ||  | || ||| ||||| |||  |||| |||| 
seq2  CATAGATCCTCACTG-AT--GGAATGAG-ACAGGAATG--AGCTGGTAAT  1138

seq1  -TGTGTCGCCTTATCT  1161
       |||||||||||||||
seq2  GTGTGTCGCCTTATCT  1154


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