BAC Information

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BAC

Clone NameB6Ng01-247O24
Chromosome1 (Build37)
Map Location 26,047,477 - 26,102,255
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC669171, Bai3, LOC665595
Downstream gene4931408C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247O24.bB6Ng01-247O24.g
ACCGA056144GA056145
length1,1771,095
definitionB6Ng01-247O24.b B6Ng01-247O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,047,477 - 26,048,652)(26,101,144 - 26,102,255)
sequence
gaattccttcatatttttccattgcttgactttcaggaactttaaaagga
ctgagtataaatgttaagacaacaaaagtgatctcatgctttagggaata
gaaatggacagggttcacaacctttttctcagcctgggagacaaggcttc
tatggatctcatttctgattgttgcttaaagtgaaatacagcctctgtag
tgaaagactcatcacaggtcacagacaggatttatctctgcccgtactag
cagtgacacatagcagattgtcaagggatgcttcatggtagcttctagaa
tgctttgaaataaaataaagaggaaacaagcgaacaacaactaaaaccca
agtggtggttgtaggttctcctccaagatccaccatgactttactaacct
taggtaccagggaacatttctagtaccaggcataacttctgtcttgttgg
acacgtcttcagtccaattagagacctgtgggttactctcaagttatgta
tgcttacaacattagcaatattttttgatgctagtcattatttttcatag
gcattagcactggttaagttggtggctgtttgaaaagaaaagagaccata
aatttgaagaagcttaagaaaggacatatgagcaagtttggaggaagggc
atgaaaagggaaaatgatacaattgtaatatagttataaaagagaaattt
aaaataccaaaaacagagtgtacttggattccaatttaaaagcacacaca
cacacacacacacacacacacacacacactttgcagaagaaattgttgca
gttgctcttaaagataagtctttaaatttgtttttaaagtgtgtggatat
ggagaaaagattcatggaaaagggaagtcctagtcagtagccctttgatg
ttcacatgaagcaggcctttatctagtatccaggtaaagcataatgggaa
ggaagcttctaacactcttgctttaaggcctcactgaatccttggatacc
aaccagcacaggcgttttctagacttgatctacatcaaaacacacttagc
caggctgagtacagaggaggaccgaagagcattctggcacatatggatta
accaggaatttctctatgcaaccaattaattaatacttctggcgagacag
agacgaagtgtttcagaggggaggtac

gaattctcatacctatataagattaaaaaaagagtcttattcagacataa
atcattgtttgttttataattaaattaactggtacttaatatctctgcag
gtaatttatttcatgtggataactagcatgaaacagccaaccagtttgat
ctttcaaaaccaaggagagaaagtggccaggcttgaatttaaaggtgact
ttttttctggtactattatagaggtcctggtggattcttttctccttccc
atttattactataattaatgatacttgaagtttttaatacagtttttctt
caggggatttcaaaacatgataatattgtttatgcctctttcaaggtacc
aaaaatattttctcaataacttaaaatattaatcatacacaaccttatcc
tttattcaaggacactagtatgactatgtgttaaaaaccaggactgggac
caacttcactgctcatatttcacatgttgacacccatattctccacatca
tttgtgcctggaaagaaatgcagagaactcctgtattgaactcatattgt
aactttgtgacaataaaactattatttttctgattgaaatgtatgattaa
atgtttgccacatgcagtaaaatcattatgaaatgcagaaataaacaaat
caaagatgctaggtattatttgatatttcttcttacttcattaccaatta
cctttctttgacttagaatcagatcctatcggaagaagcacaaggttctc
ctgggagttctgtttctacgtaaattggcaaattctggcaacacccagga
aagatataaaatcacagcagcaataatgtcccttgttccctttactgttc
aaagtaatagacagttactcagagaggagtcaaataaaacattagttctt
tatttttttcagatgtgaggaatttattatcaatttaatagagagtatac
agtcaaattcccagattttacatcaaactagttgggtatctaccttcagg
tttttgttgtttgtttgtttgtttgttttgttttcatgctagaaactttt
tttactagtattttctcaatacattcaaatgctatccaagtcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_26047477_26048652
seq2: B6Ng01-247O24.b_44_1220

seq1  GAATTCCTTCATATTTTTCCATTGCTTGACTTTCAGGAACTTTAAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCATATTTTTCCATTGCTTGACTTTCAGGAACTTTAAAAGGA  50

seq1  CTGAGTATAAATGTTAAGACAACAAAAGTGATCTCATGCTTTAGGGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTATAAATGTTAAGACAACAAAAGTGATCTCATGCTTTAGGGAATA  100

seq1  GAAATGGACAGGGTTCACAACCTTTTTCTCAGCCTGGGAGACAAGGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGACAGGGTTCACAACCTTTTTCTCAGCCTGGGAGACAAGGCTTC  150

seq1  TATGGATCTCATTTCTGATTGTTGCTTAAAGTGAAATACAGCCTCTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATCTCATTTCTGATTGTTGCTTAAAGTGAAATACAGCCTCTGTAG  200

seq1  TGAAAGACTCATCACAGGTCACAGACAGGATTTATCTCTGCCCGTACTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACTCATCACAGGTCACAGACAGGATTTATCTCTGCCCGTACTAG  250

seq1  CAGTGACACATAGCAGATTGTCAAGGGATGCTTCATGGTAGCTTCTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACACATAGCAGATTGTCAAGGGATGCTTCATGGTAGCTTCTAGAA  300

seq1  TGCTTTGAAATAAAATAAAGAGGAAACAAGCGAACAACAACTAAAACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGAAATAAAATAAAGAGGAAACAAGCGAACAACAACTAAAACCCA  350

seq1  AGTGGTGGTTGTAGGTTCTCCTCCAAGATCCACCATGACTTTACTAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGTTGTAGGTTCTCCTCCAAGATCCACCATGACTTTACTAACCT  400

seq1  TAGGTACCAGGGAACATTTCTAGTACCAGGCATAACTTCTGTCTTGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACCAGGGAACATTTCTAGTACCAGGCATAACTTCTGTCTTGTTGG  450

seq1  ACACGTCTTCAGTCCAATTAGAGACCTGTGGGTTACTCTCAAGTTATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTCTTCAGTCCAATTAGAGACCTGTGGGTTACTCTCAAGTTATGTA  500

seq1  TGCTTACAACATTAGCAATATTTTTTGATGCTAGTCATTATTTTTCATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACAACATTAGCAATATTTTTTGATGCTAGTCATTATTTTTCATAG  550

seq1  GCATTAGCACTGGTTAAGTTGGTGGCTGTTTGAAAAGAAAAGAGACCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGCACTGGTTAAGTTGGTGGCTGTTTGAAAAGAAAAGAGACCATA  600

seq1  AATTTGAAGAAGCTTAAGAAAGGACATATGAGCAAGTTTGGAGGAAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAAGAAGCTTAAGAAAGGACATATGAGCAAGTTTGGAGGAAGGGC  650

seq1  ATGAAAAGGGAAAATGATACAATTGTAATATAGTTATAAAAGAGAAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGGGAAAATGATACAATTGTAATATAGTTATAAAAGAGAAATTT  700

seq1  AAAATACCAAAAACAGAGTGTACTTGGATTCCAATTTAAAAGCACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCAAAAACAGAGTGTACTTGGATTCCAATTTAAAAGCACACACA  750

seq1  CACACACACACACACACACACACACACACTTTGCAGAAGAAATTGTTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACTTTGCAGAAGAAATTGTTGCA  800

seq1  GTTGCTCTTAAAGATAAGTCTTTAAATTTGTTTTTAAAGTGTGTGGATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCTTAAAGATAAGTCTTTAAATTTGTTTTTAAAGTGTGTGGATAT  850

seq1  GGAGAAAAGATTCATGGAAAAGGGAAGTCCTAGTCAGTAGCCCTTTGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAGATTCATGGAAAAGGGAAGTCCTAGTCAGTAGCCCTTTGATG  900

seq1  TTCACATGAAGCAGGCC-TTATCTAGTATCCAGGTAAAGCATAAT-GGAA  948
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  TTCACATGAAGCAGGCCTTTATCTAGTATCCAGGTAAAGCATAATGGGAA  950

seq1  GGAAGCTTCTAACACTCTTGCTTTAAAGCCTCACTGAAATCCTT-GATAC  997
      |||||||||||||||||||||||||| ||||||||| ||||||| |||||
seq2  GGAAGCTTCTAACACTCTTGCTTTAAGGCCTCACTG-AATCCTTGGATAC  999

seq1  CAACCAGCACAGGCGTTTTCTAGACTTGACCTACATC-AAACACACTTAG  1046
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  CAACCAGCACAGGCGTTTTCTAGACTTGATCTACATCAAAACACACTTAG  1049

seq1  CCAGGCTGAGTACAGAGGAGGACCG-AGAGCATCCTGGCACAATATGG-T  1094
      ||||||||||||||||||||||||| ||||||| ||||||| |||||| |
seq2  CCAGGCTGAGTACAGAGGAGGACCGAAGAGCATTCTGGCAC-ATATGGAT  1098

seq1  TTACCAAGAATTTCTCTATGCAACCCAATAATTTATACTTCTGCCGAGAA  1144
      | |||| |||||||||||||||||| | ||||| ||||||||| ||||| 
seq2  TAACCAGGAATTTCTCTATGCAACCAATTAATTAATACTTCTGGCGAGAC  1148

seq1  AGAAGACAGAAAGTGTTTCCAGA-GGGAGGTAC  1176
      || ||||   |||||||| |||| |||||||||
seq2  AG-AGAC--GAAGTGTTT-CAGAGGGGAGGTAC  1177


seq1: chr1_26101144_26102255
seq2: B6Ng01-247O24.g_67_1161 (reverse)

seq1  GGGGACTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAATACCTAGTT  50
      ||||||||   |||||||||||| |||||  ||  |||||||| ||||| 
seq2  GGGGACTT---GGATAGCATTTG-AATGT--ATTGAGAAAATA-CTAGT-  42

seq1  AAAAAAAAGTTTCTAGCAATTGGAAAAACAAAACAAAACAAAACAAAACA  100
       |||||||||||||||||  ||  |||||||||| |||||||   |||||
seq2  -AAAAAAAGTTTCTAGCA--TG--AAAACAAAAC-AAACAAA--CAAACA  84

seq1  AACAAACAAAAACCTGAAGGTAAGATA-CCAACTAGTTTGATGTAAAATC  149
      ||| ||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  AAC-AACAAAAACCTGAAGGT-AGATACCCAACTAGTTTGATGTAAAATC  132

seq1  TGGAAATTTGACTGTATACTCTCTATTAAATTGATAATAAATTCCTCACA  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTTGACTGTATACTCTCTATTAAATTGATAATAAATTCCTCACA  182

seq1  TCTGAAAAAAATAAAGAACTAATGTTTTATTTGACTCCTCTCTGAGTAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAAAATAAAGAACTAATGTTTTATTTGACTCCTCTCTGAGTAAC  232

seq1  TGTCTATTACTTTGAACAGTAAAGGGAACAAGGGACATTATTGCTGCTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATTACTTTGAACAGTAAAGGGAACAAGGGACATTATTGCTGCTGT  282

seq1  GATTTTATATCTTTCCTGGGTGTTGCCAGAATTTGCCAATTTACGTAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATATCTTTCCTGGGTGTTGCCAGAATTTGCCAATTTACGTAGAA  332

seq1  ACAGAACTCCCAGGAGAACCTTGTGCTTCTTCCGATAGGATCTGATTCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTCCCAGGAGAACCTTGTGCTTCTTCCGATAGGATCTGATTCTA  382

seq1  AGTCAAAGAAAGGTAATTGGTAATGAAGTAAGAAGAAATATCAAATAATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAGAAAGGTAATTGGTAATGAAGTAAGAAGAAATATCAAATAATA  432

seq1  CCTAGCATCTTTGATTTGTTTATTTCTGCATTTCATAATGATTTTACTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCATCTTTGATTTGTTTATTTCTGCATTTCATAATGATTTTACTGC  482

seq1  ATGTGGCAAACATTTAATCATACATTTCAATCAGAAAAATAATAGTTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCAAACATTTAATCATACATTTCAATCAGAAAAATAATAGTTTTA  532

seq1  TTGTCACAAAGTTACAATATGAGTTCAATACAGGAGTTCTCTGCATTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACAAAGTTACAATATGAGTTCAATACAGGAGTTCTCTGCATTTCT  582

seq1  TTCCAGGCACAAATGATGTGGAGAATATGGGTGTCAACATGTGAAATATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCACAAATGATGTGGAGAATATGGGTGTCAACATGTGAAATATG  632

seq1  AGCAGTGAAGTTGGTCCCAGTCCTGGTTTTTAACACATAGTCATACTAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGAAGTTGGTCCCAGTCCTGGTTTTTAACACATAGTCATACTAGT  682

seq1  GTCCTTGAATAAAGGATAAGGTTGTGTATGATTAATATTTTAAGTTATTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGAATAAAGGATAAGGTTGTGTATGATTAATATTTTAAGTTATTG  732

seq1  AGAAAATATTTTTGGTACCTTGAAAGAGGCATAAACAATATTATCATGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATTTTTGGTACCTTGAAAGAGGCATAAACAATATTATCATGTT  782

seq1  TTGAAATCCCCTGAAGAAAAACTGTATTAAAAACTTCAAGTATCATTAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCCCCTGAAGAAAAACTGTATTAAAAACTTCAAGTATCATTAAT  832

seq1  TATAGTAATAAATGGGAAGGAGAAAAGAATCCACCAGGACCTCTATAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAATAAATGGGAAGGAGAAAAGAATCCACCAGGACCTCTATAATA  882

seq1  GTACCAGAAAAAAAGTCACCTTTAAATTCAAGCCTGGCCACTTTCTCTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGAAAAAAAGTCACCTTTAAATTCAAGCCTGGCCACTTTCTCTCC  932

seq1  TTGGTTTTGAAAGATCAAACTGGTTGGCTGTTTCATGCTAGTTATCCACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGAAAGATCAAACTGGTTGGCTGTTTCATGCTAGTTATCCACA  982

seq1  TGAAATAAATTACCTGCAGAGATATTAAGTACCAGTTAATTTAATTATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAATTACCTGCAGAGATATTAAGTACCAGTTAATTTAATTATAA  1032

seq1  AACAAACAATGATTTATGTCTGAATAAGACTCTTTTTTTAATCTTATATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAATGATTTATGTCTGAATAAGACTCTTTTTTTAATCTTATATA  1082

seq1  GGTATGAGAATTC  1112
      |||||||||||||
seq2  GGTATGAGAATTC  1095


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