BAC Information

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BAC

Clone NameB6Ng01-248H13
Chromosome1 (Build37)6 (Build37)
Map Location 31,074,871 - 31,074,977121,421,368 - 121,422,493
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616
Downstream gene4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248H13.bB6Ng01-248H13.g
ACCGA056542GA056543
length9781,126
definitionB6Ng01-248H13.b B6Ng01-248H13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,074,871 - 31,074,977)(121,421,368 - 121,422,493)
sequence
gaattctccatttttcaataaatctcagaaagcctacctggacatagtgg
acatagcagggccttccaacaactatgtagaccaggctggcctcaaactc
acagagatgagcctgactctgtctcccaagtgttaggattagaggcttat
gccatcacatacagcccaagtccaaaattgtaacaagagatttcaatact
atttttttttagtgataggtttggttttctgtttgcttgtttttatttct
cattaattaattaatttattttatatccagatggaagctttccttccctc
ctctcctcccagtctctccctctcacctttcttcctcccatgcctcctcc
ctttctcctcagagacagggagaccttccacgggtatccaccctcttggc
atatcacgttgcagtaagactaagtgcatctccttctattgagactggac
aaagcatcccagttagggggaagggatccaaaagcaggcaacatagtcag
agaaagtccctgctcctgctggtaggggtctcacataaaggcccagctgc
agaactgttacatttgtgcaggggacctagttgtaccccaaacaggggta
gttggttggtagttcagtctctgtgagcacctgtggtcccggttagttga
ttctataggttttcttgtgatttccttgacctctttggctttttccatcc
ttccccatctttcacaagattcctggagctccacctactgtttgactgtg
gatctctgcatctgtttcagcttgtgggtgaagcctctcagtgacagttg
tgctagcctcttgtctacaagttatggcagaatatcataaatggagtcag
gggtgatctttctctcatggaaatgggactcaagccagtcactggttggc
catttcccccaattttctgttcccttcttaatccctgcatgttctaatag
acaggaaaaattgtgaatctaagtcttc

gaattcaagtgaagaattctaagtgtcaggcctctatggctgcccccatg
gtagtggggtggaattgttccctctgttgggggaaaaggctatataatat
cgtggaagaatgttgcctttagctgagttgtggacattgaggaaaaccca
actctctggttttcagaccaaggggggaaaaaaaagacagccataaaact
gaaagacaaataggccacggaggatttttttgggtcttgaatcagatgct
tcaggtctatcaagccaggtcatccctgagcttctgtgcttctgtccaaa
cctaccctgtgatcaagcatgcctacttcaccttttaaactccactttga
tgggagaggaaagtgaggtagggggcagagaagaggtgagcttttaagtg
atgcagccagtcttcacaagtgtcttccagacataaagcacatgcaaata
gagatgaggcactcggcggctctcctcacttgcccctccctctcctgtag
catcacaccatgaaggccactgctaaccaggtactgattgccacggggct
gttcttctctcgcctgtctaaaaagaagcaatactgacagcatcgccagg
ctctttcaatacagaggagaaaacgttccagccccctttatctcatcctc
ccacattcctataccatggacctcacaagtgaaaagaaatcttgaggccc
tagactctgcgtggggacaattaatatttctcctggaatccaagatgagg
tttcctaataaccaaagggaaacaaggcttgccataagaggccaccacag
agatttatagaggcattacattcaagaaactgctttccagctgtctctga
tctcattgtctcttcccatgatttgaacccagataagcttctgagtcagt
ggagagctccagccaggtgagtcctcaagctgaaacaagaagacatccaa
ggagtctggagggttgttttcttgcgtatggcttggcactatagagcctc
agcataaagatgttcactgggttcagaaggggagaaagcttccaaggtgg
agccactcctggcttgacttcacttgcaatcagataagagccagctcttc
ccgtggcaggctgtctcacacattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_31074871_31074977
seq2: B6Ng01-248H13.b_124_258

seq1  TGTAGACCAGGCTAGCCTCAAACT--CAGAAATCTGCCTGCCTCTGCCTC  48
      ||||||||||||| ||||||||||  |||| ||  ||||| ||||| |||
seq2  TGTAGACCAGGCTGGCCTCAAACTCACAGAGATGAGCCTGACTCTGTCTC  50

seq1  CCAAGTGCTGGGATTAAAGGCGTGCGCCA----CTACCACCC--GGC---  89
      ||||||| | |||||| |||| |  ||||     |||  |||  | |   
seq2  CCAAGTGTTAGGATTAGAGGCTTATGCCATCACATACAGCCCAAGTCCAA  100

seq1  -----------------TCAATACTATTTTTTTTT  107
                       ||||||||||||||||||
seq2  AATTGTAACAAGAGATTTCAATACTATTTTTTTTT  135


seq1: chr6_121421368_121422493
seq2: B6Ng01-248H13.g_66_1191

seq1  GAATTCAAGTGAAGAATTCTAAGTGTCAGGCCTCTATGGCTGCCCCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGAAGAATTCTAAGTGTCAGGCCTCTATGGCTGCCCCCATG  50

seq1  GTAGTGGGGTGGAATTGTTCCCTCTGTTGGGGGAAAAGGCTATATAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGGGTGGAATTGTTCCCTCTGTTGGGGGAAAAGGCTATATAATAT  100

seq1  CGTGGAAGAATGTTGCCTTTAGCTGAGTTGTGGACATTGAGGAAAACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAGAATGTTGCCTTTAGCTGAGTTGTGGACATTGAGGAAAACCCA  150

seq1  ACTCTCTGGTTTTCAGACCAAGGGGGGAAAAAAAAGACAGCCATAAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTGGTTTTCAGACCAAGGGGGGAAAAAAAAGACAGCCATAAAACT  200

seq1  GAAAGACAAATAGGCCACGGAGGATTTTTTTGGGTCTTGAATCAGATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACAAATAGGCCACGGAGGATTTTTTTGGGTCTTGAATCAGATGCT  250

seq1  TCAGGTCTATCAAGCCAGGTCATCCCTGAGCTTCTGTGCTTCTGTCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCTATCAAGCCAGGTCATCCCTGAGCTTCTGTGCTTCTGTCCAAA  300

seq1  CCTACCCTGTGATCAAGCATGCCTACTTCACCTTTTAAACTCCACTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCTGTGATCAAGCATGCCTACTTCACCTTTTAAACTCCACTTTGA  350

seq1  TGGGAGAGGAAAGTGAGGTAGGGGGCAGAGAAGAGGTGAGCTTTTAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGGAAAGTGAGGTAGGGGGCAGAGAAGAGGTGAGCTTTTAAGTG  400

seq1  ATGCAGCCAGTCTTCACAAGTGTCTTCCAGACATAAAGCACATGCAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCCAGTCTTCACAAGTGTCTTCCAGACATAAAGCACATGCAAATA  450

seq1  GAGATGAGGCACTCGGCGGCTCTCCTCACTTGCCCCTCCCTCTCCTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGGCACTCGGCGGCTCTCCTCACTTGCCCCTCCCTCTCCTGTAG  500

seq1  CATCACACCATGAAGGCCACTGCTAACCAGGTACTGATTGCCACGGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACACCATGAAGGCCACTGCTAACCAGGTACTGATTGCCACGGGGCT  550

seq1  GTTCTTCTCTCGCCTGTCTAAAAAGAAGCAATACTGACAGCATCGCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTCTCGCCTGTCTAAAAAGAAGCAATACTGACAGCATCGCCAGG  600

seq1  CTCTTTCAATACAGAGGAGAAAACGTTCCAGCCCCCTTTATCTCATCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCAATACAGAGGAGAAAACGTTCCAGCCCCCTTTATCTCATCCTC  650

seq1  CCACATTCCTATACCATGGACCTCACAAGTGAAAAGAAATCTTGAGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTCCTATACCATGGACCTCACAAGTGAAAAGAAATCTTGAGGCCC  700

seq1  TAGACTCTGCGTGGGGACAATTAATATTTCTCCTGGAATCCAAGATGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCTGCGTGGGGACAATTAATATTTCTCCTGGAATCCAAGATGAGG  750

seq1  TTTCCTAATAACCAAAGGGAAACAAGGCTTGCCATAAGAGGCCACCACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAATAACCAAAGGGAAACAAGGCTTGCCATAAGAGGCCACCACAG  800

seq1  AGATTTATAGAGGCATTACATTCAAGAAACTGCTTTCCAGCTGTCTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATAGAGGCATTACATTCAAGAAACTGCTTTCCAGCTGTCTCTGA  850

seq1  TCTCATTGTTCTCTTCCCATGATTTGAACCCAGATAAGCTTCTGAGTCAG  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTG-TCTCTTCCCATGATTTGAACCCAGATAAGCTTCTGAGTCAG  899

seq1  TGGAGAGCTCCAGCCAGGTGAGTCCTCAAGCTGAAACA--GAGACATCC-  947
      ||||||||||||||||||||||||||||||||||||||   |||||||| 
seq2  TGGAGAGCTCCAGCCAGGTGAGTCCTCAAGCTGAAACAAGAAGACATCCA  949

seq1  AGGAGTCTGGAGGGTTGTTT--CTGCGTATGCCTTGGCACTATAGAGGCT  995
      ||||||||||||||||||||   |||||||| ||||||||||||||| ||
seq2  AGGAGTCTGGAGGGTTGTTTTCTTGCGTATGGCTTGGCACTATAGAGCCT  999

seq1  CAGCATAAAGATGTTCACTTGGGTCAGAA-GGGAGAAAGCTTTCCCAAG-  1043
      ||||||||||||||||||| || |||||| ||||||||||||  ||||| 
seq2  CAGCATAAAGATGTTCACTGGGTTCAGAAGGGGAGAAAGCTT--CCAAGG  1047

seq1  -TGAGCCACTCCTGGCTCTGACTCCCACTGC-ATCAGATAAAGAGCCAGC  1091
        ||||||||||||||| ||||| |   ||| ||||||| ||||||||||
seq2  TGGAGCCACTCCTGGCT-TGACTTCACTTGCAATCAGAT-AAGAGCCAGC  1095

seq1  TCCTTCCCCTGGGCAGCGCTGTCTCCCACCATTCA  1126
      | |||||| | ||||| |||||||| || ||||||
seq2  T-CTTCCCGT-GGCAG-GCTGTCTCACA-CATTCA  1126


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