BAC Information

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BAC

Clone NameB6Ng01-249J16
Chromosome1 (Build37)
Map Location 174,859,841 - 175,068,198
singlet/doubletdoublet
Overlap geneOlfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408
Upstream geneSlamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs
Downstream geneGA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249J16.bB6Ng01-249J16.g
ACCGA057382GA057383
length1,001940
definitionB6Ng01-249J16.b B6Ng01-249J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(175,067,215 - 175,068,198)(174,859,841 - 174,860,456)
sequence
gaattcatttatttccaatttgcctgcttgtgcaggcagtatattcactg
aacaacaccatctcctaaatcccgcccacagtctacctcacaagccaagg
gtcatagtgagactactctcttgataaaggaggggaaacctcccctgata
atggcacaaatgcattgtctagtgaccagagtacgagggctgcaaatgtc
tagaaaatgttccattttaaaacttgtacaaacatagtgatggcttaact
acagttttctatgattcagtgctagatatctatctctatgagagcaaaca
ccattactggttttgtggtgatagtattcccagctaacatactgcctggc
acttgagtggatgctcagtaatatgcttattcaatatttggggaaaacag
ccactgacacagaagaagagataattaatgtcttttgcatgtttattcca
gatttgctggtttgttaacaaaacatatttcagtttctaagatacacgct
gttcctgtgagtcactaaccaaaaataaagagtttccctcttctaattgc
ccaaattcctaacgaggcccctgagatggggcctcacactaggtctctgg
tgccctctgtgcccaggaatgattctctagggaagtcttgagagtaccag
agttgatagacctgtttccctttttggataaacccaggtagcattcttag
attcagggtttccagaattttctatgctgcagacagactttctgaggcta
tcagagtcaaagcttttagcctggaaatttgccactacattatgaaattc
ctttctgacactctggaaatgcttacctgcttgccttaggatttttaaac
tttattcccactccggcttcctaaagcgtccccatctcaggtcctatctt
tcttaaatttgcagacacagccagcttactaagaaaaaattcttatgatt
ttctggtttccagtttttcagaaagtaagtgtttgttcgaaacaaaaatt
a
gaattcatatctgaaagacttgttggaagtgctgcttacttggaggaagt
acctgaacagaggttgaattcaaaagaatatttatcctttcacaggtaaa
aggtttagaaaggaggaaaaaataccttgcatttggaacaatatgagaga
tgtcttaacattatcaaaggacttgccaagaccttgtctaccacaagttt
ctgtgtcaaagtgtagaattatttgaaagatgttgttttagaagagagct
ctgcccacacatcctgcttcttggggcttcctggaatgttgcttcatcag
aattcatttcattacactcaggcacacagaggtcagcacaactgtggtcc
aagttcaagctggaggcagaacttaccattgtccatgcaatgctgattct
gcaggtacgtggaatgccataggtacagggtcatggaggttttctcaggg
atttaaaaggaaatcctgaaattcagccaatatatagcagtttggattct
ctgtgagtagtttctagataagaggatgtgtgaagctcagagggcaaaat
ttaagccacagtggatacagggactagaaatcactgaggacatggaacat
ctacaaagaaaaagcctaggcagtgagaagagccagcctgaaggagaacc
atgtggtttgatggcatcaaggtcttagaagctcacattctactaccaat
tctcgtgactccagacagactgatgagatttagtgtttactttcatgggc
ttaggtcttgcctaattctgcccccattctttgtcccattttttcctttt
gggaatgatggtacttacttctgtgcaattgtttctgtttatattttgct
tttattttataggaagcttcacaacccacattgtctgcctttgataggga
gcctcagagggacactttgaagttgggaatttttgagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175067215_175068198
seq2: B6Ng01-249J16.b_50_1050 (reverse)

seq1  TAATTTTTGTTTC-AACAAACACTTAC-TTCTTGAAAACTGGAAA-CAG-  46
      ||||||||||||| ||||||||||||| ||||  ||||||||||| ||| 
seq2  TAATTTTTGTTTCGAACAAACACTTACTTTCTGAAAAACTGGAAACCAGA  50

seq1  AAATCAT-AGAA-TTTTTCTTAGT-AGCT-GCTGTGTCTGC-AATTTAAG  91
      ||||||| |||| ||||||||||| |||| ||||||||||| ||||||||
seq2  AAATCATAAGAATTTTTTCTTAGTAAGCTGGCTGTGTCTGCAAATTTAAG  100

seq1  AAAGATA-GACCTGAGAT-GGGACGCTTTAAGAAGCCGGAGT-GGAATAA  138
      ||||||| |||||||||| ||||||||||| ||||||||||| |||||||
seq2  AAAGATAGGACCTGAGATGGGGACGCTTTAGGAAGCCGGAGTGGGAATAA  150

seq1  --GTTAAAAATCCTAAGGCAAGCAGGTAAGCATTTCCAGAGTGTCAG-AA  185
         |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTTTAAAAATCCTAAGGCAAGCAGGTAAGCATTTCCAGAGTGTCAGAAA  200

seq1  GGAATTTCATAATGTAGTGGC-AATTTCCAGGCT-AAAGCTTTGACTCTG  233
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  GGAATTTCATAATGTAGTGGCAAATTTCCAGGCTAAAAGCTTTGACTCTG  250

seq1  ATAGCCTCAGAAAGTCTGTCTGCAGCATAGAAAATTCTGGAAACCCTGAA  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTCAGAAAGTCTGTCTGCAGCATAGAAAATTCTGGAAACCCTGAA  300

seq1  TCTAAGAATGCTACCTGGGTTTATCCAAAAAGGGAAACAGGTCTATCAAC  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAATGCTACCTGGGTTTATCCAAAAAGGGAAACAGGTCTATCAAC  350

seq1  TCTGGTACTCTCAAGACTTCCCTAGAGAATCATTCCTGGGCACAGAGGGC  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTACTCTCAAGACTTCCCTAGAGAATCATTCCTGGGCACAGAGGGC  400

seq1  ACCAGAGACCTAGTGTGAGGCCCCATCTCAGGGGCCTCGTTAGGAATTTG  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGACCTAGTGTGAGGCCCCATCTCAGGGGCCTCGTTAGGAATTTG  450

seq1  GGCAATTAGAAGAGGGAAACTCTTTATTTTTGGTTAGTGACTCACAGGAA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTAGAAGAGGGAAACTCTTTATTTTTGGTTAGTGACTCACAGGAA  500

seq1  CAGCGTGTATCTTAGAAACTGAAATATGTTTTGTTAACAAACCAGCAAAT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTGTATCTTAGAAACTGAAATATGTTTTGTTAACAAACCAGCAAAT  550

seq1  CTGGAATAAACATGCAAAAGACATTAATTATCTCTTCTTCTGTGTCAGTG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATAAACATGCAAAAGACATTAATTATCTCTTCTTCTGTGTCAGTG  600

seq1  GCTGTTTTCCCCAAATATTGAATAAGCATATTACTGAGCATCCACTCAAG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTCCCCAAATATTGAATAAGCATATTACTGAGCATCCACTCAAG  650

seq1  TGCCAGGCAGTATGTTAGCTGGGAATACTATCACCACAAAACCAGTAATG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCAGTATGTTAGCTGGGAATACTATCACCACAAAACCAGTAATG  700

seq1  GTGTTTGCTCTCATAGAGATAGATATCTAGCACTGAATCATAGAAAACTG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCTCTCATAGAGATAGATATCTAGCACTGAATCATAGAAAACTG  750

seq1  TAGTTAAGCCATCACTATGTTTGTACAAGTTTTAAAATGGAACATTTTCT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAGCCATCACTATGTTTGTACAAGTTTTAAAATGGAACATTTTCT  800

seq1  AGACATTTGCAGCCCTCGTACTCTGGTCACTAGACAATGCATTTGTGCCA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTGCAGCCCTCGTACTCTGGTCACTAGACAATGCATTTGTGCCA  850

seq1  TTATCAGGGGAGGTTTCCCCTCCTTTATCAAGAGAGTAGTCTCACTATGA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGGGGAGGTTTCCCCTCCTTTATCAAGAGAGTAGTCTCACTATGA  900

seq1  CCCTTGGCTTGTGAGGTAGACTGTGGGCGGGATTTAGGAGATGGTGTTGT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCTTGTGAGGTAGACTGTGGGCGGGATTTAGGAGATGGTGTTGT  950

seq1  TCAGTGAATATACTGCCTGCACAAGCAGGCAAATTGGAAATAAATGAATT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAATATACTGCCTGCACAAGCAGGCAAATTGGAAATAAATGAATT  1000

seq1  C  984
      |
seq2  C  1001

seq1: chr1_174859841_174860456
seq2: B6Ng01-249J16.g_72_687

seq1  GAATTCATATCTGAAAGACTTGTTGGAAGTGCTGCTTACTTGGAGGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCTGAAAGACTTGTTGGAAGTGCTGCTTACTTGGAGGAAGT  50

seq1  ACCTGAACAGAGGTTGAATTCAAAAGAATATTTATCCTTTCACAGGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAACAGAGGTTGAATTCAAAAGAATATTTATCCTTTCACAGGTAAA  100

seq1  AGGTTTAGAAAGGAGGAAAAAATACCTTGCATTTGGAACAATATGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAGAAAGGAGGAAAAAATACCTTGCATTTGGAACAATATGAGAGA  150

seq1  TGTCTTAACATTATCAAAGGACTTGCCAAGACCTTGTCTACCACAAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAACATTATCAAAGGACTTGCCAAGACCTTGTCTACCACAAGTTT  200

seq1  CTGTGTCAAAGTGTAGAATTATTTGAAAGATGTTGTTTTAGAAGAGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCAAAGTGTAGAATTATTTGAAAGATGTTGTTTTAGAAGAGAGCT  250

seq1  CTGCCCACACATCCTGCTTCTTGGGGCTTCCTGGAATGTTGCTTCATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACACATCCTGCTTCTTGGGGCTTCCTGGAATGTTGCTTCATCAG  300

seq1  AATTCATTTCATTACACTCAGGCACACAGAGGTCAGCACAACTGTGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTTCATTACACTCAGGCACACAGAGGTCAGCACAACTGTGGTCC  350

seq1  AAGTTCAAGCTGGAGGCAGAACTTACCATTGTCCATGCAATGCTGATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAGCTGGAGGCAGAACTTACCATTGTCCATGCAATGCTGATTCT  400

seq1  GCAGGTACGTGGAATGCCATAGGTACAGGGTCATGGAGGTTTTCTCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTACGTGGAATGCCATAGGTACAGGGTCATGGAGGTTTTCTCAGGG  450

seq1  ATTTAAAAGGAAATCCTGAAATTCAGCCAATATATAGCAGTTTGGATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAGGAAATCCTGAAATTCAGCCAATATATAGCAGTTTGGATTCT  500

seq1  CTGTGAGTAGTTTCTAGATAAGAGGATGTGTGAAGCTCAGAGGGCAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTAGTTTCTAGATAAGAGGATGTGTGAAGCTCAGAGGGCAAAAT  550

seq1  TTAAGCCACAGTGGATACAGGGACTAGAAATCACTGAGGACATGGAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCACAGTGGATACAGGGACTAGAAATCACTGAGGACATGGAACAT  600

seq1  CTACAAAGAAAAAGCC  616
      ||||||||||||||||
seq2  CTACAAAGAAAAAGCC  616