BAC Information

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BAC

Clone NameB6Ng01-249O11
Chromosome1 (Build37)
Map Location 162,648,052 - 162,772,702
singlet/doubletdoublet
Overlap geneRabgap1l
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Gpr52
Downstream geneEG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249O11.bB6Ng01-249O11.g
ACCGA057601GA057602
length1,0331,003
definitionB6Ng01-249O11.b B6Ng01-249O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,648,052 - 162,648,951)(162,772,206 - 162,772,702)
sequence
gaattctcttgatgagactgccacctaccggaataatcgaattctaccat
ttacagtttatgatttaaaggcattaaatacatttggcataataagaggc
aggttttgtttcttttgaaaacaggttaaactaagtattttcaaaaatct
cccatatcatagataattttgccaaaggaataattgtttgatcaaaactc
agcctaaagcaagttcaagccaattcccatatactaagaaaatcaccttt
gaaaagaagagaagaggaagagaagagaagagaagagaagagaagagaag
agaagagaagagaagagaaatgaaataatttgaatgaatttattaaccac
tactaattataacccatagctaaaagtatgagattatcatcaagatagtt
atcttattttacctgttataggaatcaactcaaaatggataaaggacctt
ataattttgagttattaggggaaaaaaagcagaaaacagttcaacataaa
aggattggcaatgacttcctgactagaactccattagcccagactataat
agcgaggattaacagatgagactgcatacattaagaagcttcggtaaggg
tgacaagtaccaaaggaagtttaagcagttatccgtgtgtcaagagatta
atttccaaaacatatagaaaataaaacctaaaagccagaacaaataaccc
aataagtgaatgagcaaatgacccaagcagtcctcaaataaagtacaata
accattaagtccatgagaaaatgagcagcagcctttaagagtaaacacaa
ataaaaactaaactgagattccatcttagtccaggtaaaatgaatggcta
gcaccaagaagacaagaaataaatgctgtcaaagatgggagagttaaggt
gcaaattcctcattcacgcttgaggagggatgcaagttagtatagccatt
agagaaatcactaccagttcctcacaaaactagaaacagaactaccgccc
actcccattgcacactctagtgtagactcagaa
gaattccttaaaggccttacagcttttgtcctttcttttatatttaagtt
tatatttatatttaaacatagagttgtccaccagatcttgccctgcttgg
agctggttaaactgggacgcttcctggaaagggtatcatgtgactagtta
gtttcttcagtgattagtcttctaatacagttttacccaaagaactgtcc
acaccgaagcgagacgttcatgttcaaacgtaaaccaatgtatcgtcggg
tcgacacttgcttcctttatttagaaagtcttgctatggaaaccaaacaa
aaacaaagcaaaataaaaccaaaccaaacccaaagctgaaccacgcaggc
gggacatttgtggtgctgtggtttgcatataaaatgtttgggaagattgt
gggacctttagaggcaaagcctcactggagggtgtgggtcaccctgggaa
gggactgaggctgtataatccagcttcactttatgtccacattctcattc
ctgagtgtgagctaaacttaccaagttatgaagttgttgtggtgggtttt
ttgtttgtttgtttgtttgtttgtttgagacaaggtttctctccataatc
ttggctatggtagaactcactatgtagacaggctggcctcaaagttacag
agatctgcctgattttgcttcctgagtgctggggtcaaaggcatacagta
tcatgcccagcaagaagttttatttttgggctggagagatgacttagcag
ttaaaagcactgactgctcttccagaggttatgagtttcaattctcagca
accacatggtggctcacaaccatctgtaaatggggatctgatgcccctct
ttctgggtgtgttctgaagacagcgacagttgtacttaacattatcatgt
agattaaaaaaaattagtcttttaaaaacaataaacaaaaatattttttt
aatagtttttattttcttactttctacggagcctaagtatttttaaaata
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162648052_162648951
seq2: B6Ng01-249O11.b_47_946

seq1  GAATTCTCTTGATGAGACTGCCACCTACCGGAATAATCGAATTCTACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGATGAGACTGCCACCTACCGGAATAATCGAATTCTACCAT  50

seq1  TTACAGTTTATGATTTAAAGGCATTAAATACATTTGGCATAATAAGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTTATGATTTAAAGGCATTAAATACATTTGGCATAATAAGAGGC  100

seq1  AGGTTTTGTTTCTTTTGAAAACAGGTTAAACTAAGTATTTTCAAAAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTGTTTCTTTTGAAAACAGGTTAAACTAAGTATTTTCAAAAATCT  150

seq1  CCCATATCATAGATAATTTTGCCAAAGGAATAATTGTTTGATCAAAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCATAGATAATTTTGCCAAAGGAATAATTGTTTGATCAAAACTC  200

seq1  AGCCTAAAGCAAGTTCAAGCCAATTCCCATATACTAAGAAAATCACCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAAGCAAGTTCAAGCCAATTCCCATATACTAAGAAAATCACCTTT  250

seq1  GAAAAGAAGAGAAGAGGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAGAGAAGAGGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG  300

seq1  AGAAGAGAAGAGAAGAGAAATGAAATAATTTGAATGAATTTATTAACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAAGAGAAGAGAAATGAAATAATTTGAATGAATTTATTAACCAC  350

seq1  TACTAATTATAACCCATAGCTAAAAGTATGAGATTATCATCAAGATAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATTATAACCCATAGCTAAAAGTATGAGATTATCATCAAGATAGTT  400

seq1  ATCTTATTTTACCTGTTATAGGAATCAACTCAAAATGGATAAAGGACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATTTTACCTGTTATAGGAATCAACTCAAAATGGATAAAGGACCTT  450

seq1  ATAATTTTGAGTTATTAGGGGAAAAAAAGCAGAAAACAGTTCAACATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTGAGTTATTAGGGGAAAAAAAGCAGAAAACAGTTCAACATAAA  500

seq1  AGGATTGGCAATGACTTCCTGACTAGAACTCCATTAGCCCAGACTATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGGCAATGACTTCCTGACTAGAACTCCATTAGCCCAGACTATAAT  550

seq1  AGCGAGGATTAACAGATGAGACTGCATACATTAAGAAGCTTCGGTAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGGATTAACAGATGAGACTGCATACATTAAGAAGCTTCGGTAAGGG  600

seq1  TGACAAGTACCAAAGGAAGTTTAAGCAGTTATCCGTGTGTCAAGAGATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTACCAAAGGAAGTTTAAGCAGTTATCCGTGTGTCAAGAGATTA  650

seq1  ATTTCCAAAACATATAGAAAATAAAACCTAAAAGCCAGAACAAATAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAAACATATAGAAAATAAAACCTAAAAGCCAGAACAAATAACCC  700

seq1  AATAAGTGAATGAGCAAATGACCCAAGCAGTCCTCAAATAAAGTACAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTGAATGAGCAAATGACCCAAGCAGTCCTCAAATAAAGTACAATA  750

seq1  ACCATTAAGTCCATGAGAAAATGAGCAGCAGCCTTTAAGAGTAAACACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAAGTCCATGAGAAAATGAGCAGCAGCCTTTAAGAGTAAACACAA  800

seq1  ATAAAAACTAAACTGAGATTCCATCTTAGTCCAGGTAAAATGAATGGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACTAAACTGAGATTCCATCTTAGTCCAGGTAAAATGAATGGCTA  850

seq1  GCACCAAGAAGACAAGAAATAAATGCTGTCAAAGATGGGAGAGTTAAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAGAAGACAAGAAATAAATGCTGTCAAAGATGGGAGAGTTAAGGT  900

seq1: chr1_162772206_162772702
seq2: B6Ng01-249O11.g_554_1069 (reverse)

seq1  TTATATTTTAAAAATACTTTAGCTCCCTTAGAAGT-AGAAA--TAAAACT  47
      |||||||||||||||||||  ||||| |   |||| |||||   ||||||
seq2  TTATATTTTAAAAATACTTAGGCTCCGTAGAAAGTAAGAAAATAAAAACT  50

seq1  TTTTAAAAAATATTTTTGTTT-TTGTTTTT-AAAGACTTATTTTTTT--A  93
       || ||||||||||||||||| |||||||| ||||||| ||||||||  |
seq2  ATTAAAAAAATATTTTTGTTTATTGTTTTTAAAAGACTAATTTTTTTTAA  100

seq1  TCT-CATG--TATGTT-AGTAC-ACTGTCGCTGTCTTCAG-ACACA-CCA  136
      ||| ||||   ||||| ||||| ||||||||||||||||| ||||| |||
seq2  TCTACATGATAATGTTAAGTACAACTGTCGCTGTCTTCAGAACACACCCA  150

seq1  G-AAGA-GGGCATCAGATCCCCA-TTACAGATGGTTGTGAGCCACCATGT  183
      | |||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAAGAGGGGCATCAGATCCCCATTTACAGATGGTTGTGAGCCACCATGT  200

seq1  GGTTGCTGAGAATTG-AACTCATAACCTCTGGAAGAGCAGTCAGTGCTTT  232
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGAGAATTGAAACTCATAACCTCTGGAAGAGCAGTCAGTGCTTT  250

seq1  TAACTGCTAAGTCATCTCTCCAGCCC-AAAATAAAACTTCTTGCTGGGCA  281
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAACTGCTAAGTCATCTCTCCAGCCCAAAAATAAAACTTCTTGCTGGGCA  300

seq1  TGATACTGTATGCCTTTGACCCCAGCACTCAGGAAGCAAAATCAGGCAGA  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTGTATGCCTTTGACCCCAGCACTCAGGAAGCAAAATCAGGCAGA  350

seq1  TCTCTGTAACTTTGAGGCCAGCCTGTCTACATAGTGAGTTCTACCATAGC  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTAACTTTGAGGCCAGCCTGTCTACATAGTGAGTTCTACCATAGC  400

seq1  CAAGATTATGGAGAGAAACCTTGTCTCAAACAAACAAACAAACAAACAAA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTATGGAGAGAAACCTTGTCTCAAACAAACAAACAAACAAACAAA  450

seq1  CAAAAAACCCACCACAACAACTTCATAACTTGGTAAGTTTAGCTCACACT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACCCACCACAACAACTTCATAACTTGGTAAGTTTAGCTCACACT  500

seq1  CAGGAATGAGAATGTG  497
      ||||||||||||||||
seq2  CAGGAATGAGAATGTG  516