BAC Information

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BAC

Clone NameB6Ng01-250K10
Chromosome1 (Build37)
Map Location 89,957,082 - 90,083,246
singlet/doubletdoublet
Overlap geneUgt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5
Upstream geneLOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561
Downstream geneUgt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250K10.bB6Ng01-250K10.g
ACCGA058140GA058141
length1,1241,012
definitionB6Ng01-250K10.b B6Ng01-250K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,957,082 - 89,958,182)(90,082,701 - 90,083,246)
sequence
gaattctttatagaggcgtaattacgtctcacagcaatggtgactccatg
gaattgccatacacacaagagcaacagagttggtttggctctgcaccagc
ctttcctacacaaggtgtcctctggtgtggccttatctggcattttttta
cttcctccagaaaactaaatgtcacttttcacctcctgccattcctagcc
cctgttaggatgttcagccatgcaaggatattataataaataaagactct
taatggagttcataatttttctgaattctcaaaatccaattccatcattt
cttaactgtctttgaaaagtggcattgccatagggggcatgatcttccaa
agcaaagatcacaaacttttcttttctggaaaacatgcaagtatataatc
agtaaaaacaggtcattagttcttcttctggaataatcattggcagtgag
tgtaacttcatctatgatgattaaaatacatgtctacactgaagtaggct
tcttaccagtaccttttcctgcaactgtactaataatgtagattctgatt
gactagatcacactgagataggcttctctaatggctcctgcagttttttc
agtgtccctttctgtctgtgtgtgtgtgtttggcttcatccaggcaggca
ggcaggcaggcaggcaggcaagcaggctgctggtgctctccatggataga
agccacacattttaccatgaaatctcttttggataaactatcccacagag
gccatgagtcagtggtgatggtcacacaagtgagttggcagtgggaaaga
cccctcagttttccagggaagactcatttcggcttcttaccctctggtgg
atttgggtttgtggacactcattggaaaactcaggggatgaataagtttt
ctctaacagtgacctcagctgaaacctcttatgaatactattattttccc
ttatgtaagagtcttgtttagcaaaaagcaatttagtaaagttacccctc
agcagaatttttctgaataccttttcttgaaccttttttgttgtgtcagg
actttatgggtttgccaaattaccttttccttttcgattctatgttggtc
tcatcagaatgaacttttgttcta

gaattcccatggctaaggatggagaagtccacagcagtctaccctgctta
catgtctatgccacttaagctatttcctatcttcttattcccaagtccat
acgttaagtcattgggtggcacagtaccttccttaagttaatcattgctg
aataaacccatgcctggcttttattatggccctaactttttgccttgata
ccaaggaacaattttttttattacctctctactaacaaaaccctgtgatg
tgcaactgctccctaggaccatcagagttcatttcataaaacaaacaatg
taagatataaagatggcgattaatcccaagacaaaaatgggtgacttcag
tagcccacactcaccaatatacaggtcattctagctagaaaaaaaaatac
acaaagatatcacctaaatggcatcataggtcaaatggatgagagatctg
aagaacattgcatccaaacactgcaggatacacaatattctcagctgtcc
ctgtaactttctctaaattaaattatgtaataagacaccaagaaagtcct
aattcatgtaggcaacctgaagcaatttttggtattctacctaaccacaa
tggataaaactagcaatcaacagcaagagaaacagagaacacacacagaa
tcattgagactgaacaacacaagactgaataatgactaagtcactgggaa
aaccaataaagaaattaaaagttcctagaatgtaatggaaaaggagacac
actttgccaaaacctatgggacacacagaaagcagtcctaaaagggatgt
taatacctacaagtttatagctacctttaaaaaaattaaagagctcccaa
ttacataatgggtatactttgtgtccttgaaaatggaaataagctaaatc
tcaaatagtacaaggtaagaaagaaataagtttcagagcagaaagaaatg
aaatattaatttttaaaatatttcaatcaacaaaacaaaactctgttctt
gaaaaaaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89957082_89958182
seq2: B6Ng01-250K10.b_44_1167

seq1  GAATTCTTTATAGAGGCGTAATTACGTCTCACAGCAATGGTGACTCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAGAGGCGTAATTACGTCTCACAGCAATGGTGACTCCATG  50

seq1  GAATTGCCATACACACAAGAGCAACAGAGTTGGTTTGGCTCTGCACCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCCATACACACAAGAGCAACAGAGTTGGTTTGGCTCTGCACCAGC  100

seq1  CTTTCCTACACAAGGTGTCCTCTGGTGTGGCCTTATCTGGCATTTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTACACAAGGTGTCCTCTGGTGTGGCCTTATCTGGCATTTTTTTA  150

seq1  CTTCCTCCAGAAAACTAAATGTCACTTTTCACCTCCTGCCATTCCTAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCAGAAAACTAAATGTCACTTTTCACCTCCTGCCATTCCTAGCC  200

seq1  CCTGTTAGGATGTTCAGCCATGCAAGGATATTATAATAAATAAAGACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAGGATGTTCAGCCATGCAAGGATATTATAATAAATAAAGACTCT  250

seq1  TAATGGAGTTCATAATTTTTCTGAATTCTCAAAATCCAATTCCATCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAGTTCATAATTTTTCTGAATTCTCAAAATCCAATTCCATCATTT  300

seq1  CTTAACTGTCTTTGAAAAGTGGCATTGCCATAGGGGGCATGATCTTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGTCTTTGAAAAGTGGCATTGCCATAGGGGGCATGATCTTCCAA  350

seq1  AGCAAAGATCACAAACTTTTCTTTTCTGGAAAACATGCAAGTATATAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGATCACAAACTTTTCTTTTCTGGAAAACATGCAAGTATATAATC  400

seq1  AGTAAAAACAGGTCATTAGTTCTTCTTCTGGAATAATCATTGGCAGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAACAGGTCATTAGTTCTTCTTCTGGAATAATCATTGGCAGTGAG  450

seq1  TGTAACTTCATCTATGATGATTAAAATACATGTCTACACTGAAGTAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTCATCTATGATGATTAAAATACATGTCTACACTGAAGTAGGCT  500

seq1  TCTTACCAGTACCTTTTCCTGCAACTGTACTAATAATGTAGATTCTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCAGTACCTTTTCCTGCAACTGTACTAATAATGTAGATTCTGATT  550

seq1  GACTAGATCACACTGAGATAGGCTTCTCTAATGGCTCCTGCAGTTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGATCACACTGAGATAGGCTTCTCTAATGGCTCCTGCAGTTTTTTC  600

seq1  AGTGTCCCTTTCTGTCTGTGTGTGTGTGTTTGGCTTCATCCAGGCAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCCTTTCTGTCTGTGTGTGTGTGTTTGGCTTCATCCAGGCAGGCA  650

seq1  GGCAGGCAGGCAGGCAGGCAAGCAGGCTGCTGGTGCTCTCCATGGATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCAGGCAGGCAGGCAAGCAGGCTGCTGGTGCTCTCCATGGATAGA  700

seq1  AGCCACACATTTTACCATGAAATCTCTTTTGGATAAACTATCCCACAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACATTTTACCATGAAATCTCTTTTGGATAAACTATCCCACAGAG  750

seq1  GCCATGAGTCAGTGGTGATGGTCACACAAGTGAGTTGGCAGTGGGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAGTCAGTGGTGATGGTCACACAAGTGAGTTGGCAGTGGGAAAGA  800

seq1  CCCCTCAGTTTTCCAGGGAAGACTCA-TTCGGCTTCTTACCCTCTGGTGG  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCCCTCAGTTTTCCAGGGAAGACTCATTTCGGCTTCTTACCCTCTGGTGG  850

seq1  ATTTGGGTTTTGTGGACACTCATTGGAAAACTCAGGGGATGAATAAGTTT  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGG-TTTGTGGACACTCATTGGAAAACTCAGGGGATGAATAAGTTT  899

seq1  TCTCTAACAGTGACCTCAGCTGAAACCTCTTATG-ATACTA-TATTTTCC  947
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  TCTCTAACAGTGACCTCAGCTGAAACCTCTTATGAATACTATTATTTTCC  949

seq1  C-TATGTAGGAGTC-TGTTTAGCAAAAAGCAA-TTAGT-AAGTTA-CCCA  992
      | |||||| ||||| ||||||||||||||||| ||||| |||||| ||| 
seq2  CTTATGTAAGAGTCTTGTTTAGCAAAAAGCAATTTAGTAAAGTTACCCCT  999

seq1  CAGCAGAA-TTTTCTG-ATACATTT--CTGAACC--TTTTGTTGTG-CAG  1035
      |||||||| ||||||| |||| |||   ||||||  |||||||||| |||
seq2  CAGCAGAATTTTTCTGAATACCTTTTCTTGAACCTTTTTTGTTGTGTCAG  1049

seq1  GACTTAGTGG--TTGCCAAA-TACCTTT--CCTTTCGA-TCTATGTTGG-  1078
      |||||  |||  |||||||| |||||||  | |||||| |||||||||| 
seq2  GACTTTATGGGTTTGCCAAATTACCTTTTCCTTTTCGATTCTATGTTGGT  1099

seq1  -TCATCAGAATG-ACATTTGTTCTA  1101
       ||||||||||| || |||||||||
seq2  CTCATCAGAATGAACTTTTGTTCTA  1124


seq1: chr1_90082701_90083246
seq2: B6Ng01-250K10.g_69_614 (reverse)

seq1  CTTTCTTGGTGTCTTATTACATAATTTAATTTAGAGAAAGTTACAGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGGTGTCTTATTACATAATTTAATTTAGAGAAAGTTACAGGGAC  50

seq1  AGCTGAGAATATTGTGTATCCTGCAGTGTTTGGATGCAATGTTCTTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGAATATTGTGTATCCTGCAGTGTTTGGATGCAATGTTCTTCAGA  100

seq1  TCTCTCATCCATTTGACCTATGATGCCATTTAGGTGATATCTTTGTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATCCATTTGACCTATGATGCCATTTAGGTGATATCTTTGTGTAT  150

seq1  TTTTTTTTCTAGCTAGAATGACCTGTATATTGGTGAGTGTGGGCTACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTAGCTAGAATGACCTGTATATTGGTGAGTGTGGGCTACTGA  200

seq1  AGTCACCCATTTTTGTCTTGGGATTAATCGCCATCTTTATATCTTACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCCATTTTTGTCTTGGGATTAATCGCCATCTTTATATCTTACATT  250

seq1  GTTTGTTTTATGAAATGAACTCTGATGGTCCTAGGGAGCAGTTGCACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTATGAAATGAACTCTGATGGTCCTAGGGAGCAGTTGCACATC  300

seq1  ACAGGGTTTTGTTAGTAGAGAGGTAATAAAAAAAATTGTTCCTTGGTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTTGTTAGTAGAGAGGTAATAAAAAAAATTGTTCCTTGGTATC  350

seq1  AAGGCAAAAAGTTAGGGCCATAATAAAAGCCAGGCATGGGTTTATTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAAAGTTAGGGCCATAATAAAAGCCAGGCATGGGTTTATTCAGC  400

seq1  AATGATTAACTTAAGGAAGGTACTGTGCCACCCAATGACTTAACGTATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTAACTTAAGGAAGGTACTGTGCCACCCAATGACTTAACGTATGG  450

seq1  ACTTGGGAATAAGAAGATAGGAAATAGCTTAAGTGGCATAGACATGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAATAAGAAGATAGGAAATAGCTTAAGTGGCATAGACATGTAAG  500

seq1  CAGGGTAGACTGCTGTGGACTTCTCCATCCTTAGCCATGGGAATTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAGACTGCTGTGGACTTCTCCATCCTTAGCCATGGGAATTC  546


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