BAC Information

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BAC

Clone NameB6Ng01-250K20
Chromosome1 (Build37)
Map Location 99,508,169 - 99,657,936
singlet/doubletdoublet
Overlap geneD1Ertd622e, Hisppd1
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346
Downstream geneZh2c2, Pam, LOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250K20.bB6Ng01-250K20.g
ACCGA058156GA058157
length8521,091
definitionB6Ng01-250K20.b B6Ng01-250K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,657,087 - 99,657,936)(99,508,169 - 99,509,262)
sequence
gaattctctgattttaaataagactactttgtaatgtgcaaatttgttta
aaaaattgaaaaatataagtaatattgaatagacaggatattaaaggtag
ctagcaataagatccttacttaaaggacagtttagagttgctgtaagata
ctaaggaactacttaactaaatttatcaagttccacaagactatctcaaa
ggctgcatgtgtgtgtgtctgtgagtgttaggtcttagaaacagaccaca
actgttacatccaattccttgttctgctgctcactgtgtgtctgtcttag
tcttcattctccttgccctcaggcagagactattttgttttgggaaccga
tttgaaatacagacataaactatgtgttgatttttttttttctttcttaa
atttctaattaaaaatagaatctcattttaaaagaaaaatctgtcacagt
tggtaagagtggtaagctgggactgcagtagccaatagttatttatgtct
gagaggagagcagcgctgttcacagagaagtcactgggcgtgcgcctttg
aaggctaggtggagtcacactcttccccctcccatcgggagacatttcgg
tagcagtgatattctaattaagcagctgtgggcgacccttgaccatccct
gaggaaataagccctccactgatattcttgtgatatgctttgttagggct
gtgagaaatagcccgaagagttgacctgtgaaggtgacctatcacctagg
acctatcactgtcacctaggaagctgatagtgagccctttcaacattctt
gatgaggaacaacagaggccttaagatgaatgatgggggggtgggggagg
gg

gaattccttatagggaaaaagagaagaaaggaagggggaaaaacaaaacc
aaagaaataaagctactctgccctagtttggagacttttagattgtgctt
tcctctagaatctctgacacagatgacagatcagtagaaaccatcacatg
ctccaagaatagctatgggatatttcataacattaataaaaatgcatttt
aaagataatgctcactgtgaatgcttaaagtcattctaaatatttctttg
ggtaagttaattgaggttctgtgtcctgggaaaggcatgagaccaattaa
agcattaagggccagagctccagaaggaagaaattatacggcatgttgta
caccccctctctgatttcaccaattacaggatttccctcagggaggtttc
cacacaagggtctcaattagtagagtctgctaaccaaaacaaagtcttgt
agacgagtggtatttccaagaatattacattcaaaacaactatagtaata
tttccaataaatatgtttgcaatgtttctgatcatctgtagacatccatg
tcatctgtttttcattcataaaaactacatacgtaggtatcatgctcaga
aagaaaatgtatgcacagcatgacctacttttaaagcactggatattttt
ctcagaaagaattaagagctattatgaataaaacaaaaagatgtatacca
ataaaataagtgtaaaaatcacttttcaatgtagtacaaatgaactgtct
ttattttcaaccaataattttaggcatgttgctattaatatattatagta
taatatattatttattatatattaagtcttttcagttcttaaaatataat
ttaaagcacatagttatatactcagttgcctattctaatgaacaaattct
ttttgtaaaggaaaagtagccttccttaaaaatagctaaactttgaatac
tgtactacattattactttccctatactatcatcaatttcatttggcaat
gcagaaaaatactttttgcttataggagatttttttcgaagattattaat
ttataagtgtttggcttcagtatagagtacaccatatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_99657087_99657936
seq2: B6Ng01-250K20.b_48_899 (reverse)

seq1  CCCCTCCCC--ACCCCCCATCATTCATCTTAAGGCCTCTGTTGTTCCTCA  48
      |||||||||   ||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCCACCCCCCCATCATTCATCTTAAGGCCTCTGTTGTTCCTCA  50

seq1  TCAAGAATGTTGAAAGGGCTCACTATCAGCTTCCTAGGTGACAGTGATAG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAATGTTGAAAGGGCTCACTATCAGCTTCCTAGGTGACAGTGATAG  100

seq1  GTCCTAGGTGATAGGTCACCTTCACAGGTCAACTCTTCGGGCTATTTCTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGGTGATAGGTCACCTTCACAGGTCAACTCTTCGGGCTATTTCTC  150

seq1  ACAGCCCTAACAAAGCATATCACAAGAATATCAGTGGAGGGCTTATTTCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCTAACAAAGCATATCACAAGAATATCAGTGGAGGGCTTATTTCC  200

seq1  TCAGGGATGGTCAAGGGTCGCCCACAGCTGCTTAATTAGAATATCACTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGATGGTCAAGGGTCGCCCACAGCTGCTTAATTAGAATATCACTGC  250

seq1  TACCGAAATGTCTCCCGATGGGAGGGGGAAGAGTGTGACTCCACCTAGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGAAATGTCTCCCGATGGGAGGGGGAAGAGTGTGACTCCACCTAGCC  300

seq1  TTCAAAGGCGCACGCCCAGTGACTTCTCTGTGAACAGCGCTGCTCTCCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGCGCACGCCCAGTGACTTCTCTGTGAACAGCGCTGCTCTCCTC  350

seq1  TCAGACATAAATAACTATTGGCTACTGCAGTCCCAGCTTACCACTCTTAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATAAATAACTATTGGCTACTGCAGTCCCAGCTTACCACTCTTAC  400

seq1  CAACTGTGACAGATTTTTCTTTTAAAATGAGATTCTATTTTTAATTAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTGACAGATTTTTCTTTTAAAATGAGATTCTATTTTTAATTAGAA  450

seq1  ATTTAAGAAAGAAAAAAAAAAATCAACACATAGTTTATGTCTGTATTTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGAAAGAAAAAAAAAAATCAACACATAGTTTATGTCTGTATTTCA  500

seq1  AATCGGTTCCCAAAACAAAATAGTCTCTGCCTGAGGGCAAGGAGAATGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGGTTCCCAAAACAAAATAGTCTCTGCCTGAGGGCAAGGAGAATGAA  550

seq1  GACTAAGACAGACACACAGTGAGCAGCAGAACAAGGAATTGGATGTAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGACAGACACACAGTGAGCAGCAGAACAAGGAATTGGATGTAACA  600

seq1  GTTGTGGTCTGTTTCTAAGACCTAACACTCACAGACACACACACATGCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTCTGTTTCTAAGACCTAACACTCACAGACACACACACATGCAG  650

seq1  CCTTTGAGATAGTCTTGTGGAACTTGATAAATTTAGTTAAGTAGTTCCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGATAGTCTTGTGGAACTTGATAAATTTAGTTAAGTAGTTCCTT  700

seq1  AGTATCTTACAGCAACTCTAAACTGTCCTTTAAGTAAGGATCTTATTGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTTACAGCAACTCTAAACTGTCCTTTAAGTAAGGATCTTATTGCT  750

seq1  AGCTACCTTTAATATCCTGTCTATTCAATATTACTTATATTTTTCAATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCTTTAATATCCTGTCTATTCAATATTACTTATATTTTTCAATTT  800

seq1  TTTAAACAAATTTGCACATTACAAAGTAGTCTTATTTAAAATCAGAGAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAAATTTGCACATTACAAAGTAGTCTTATTTAAAATCAGAGAAT  850

seq1  TC  850
      ||
seq2  TC  852


seq1: chr1_99508169_99509262
seq2: B6Ng01-250K20.g_68_1158

seq1  GAATTCCTTATAGGGAAAAAGAGAAGAAAGGAAGGGGGAAAAACAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATAGGGAAAAAGAGAAGAAAGGAAGGGGGAAAAACAAAACC  50

seq1  AAAGAAATAAAGCTACTCTGCCCTAGTTTGGAGACTTTTAGATTGTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATAAAGCTACTCTGCCCTAGTTTGGAGACTTTTAGATTGTGCTT  100

seq1  TCCTCTAGAATCTCTGACACAGATGACAGATCAGTAGAAACCATCACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAGAATCTCTGACACAGATGACAGATCAGTAGAAACCATCACATG  150

seq1  CTCCAAGAATAGCTATGGGATATTTCATAACATTAATAAAAATGCATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGAATAGCTATGGGATATTTCATAACATTAATAAAAATGCATTTT  200

seq1  AAAGATAATGCTCACTGTGAATGCTTAAAGTCATTCTAAATATTTCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAATGCTCACTGTGAATGCTTAAAGTCATTCTAAATATTTCTTTG  250

seq1  GGTAAGTTAATTGAGGTTCTGTGTCCTGGGAAAGGCATGAGACCAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTTAATTGAGGTTCTGTGTCCTGGGAAAGGCATGAGACCAATTAA  300

seq1  AGCATTAAGGGCCAGAGCTCCAGAAGGAAGAAATTATACGGCATGTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAAGGGCCAGAGCTCCAGAAGGAAGAAATTATACGGCATGTTGTA  350

seq1  CACCCCCTCTCTGATTTCACCAATTACAGGATTTCCCTCAGGGAGGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCTCTCTGATTTCACCAATTACAGGATTTCCCTCAGGGAGGTTTC  400

seq1  CACACAAGGGTCTCAATTAGTAGAGTCTGCTAACCAAAACAAAGTCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGGGTCTCAATTAGTAGAGTCTGCTAACCAAAACAAAGTCTTGT  450

seq1  AGACGAGTGGTATTTCCAAGAATATTACATTCAAAACAACTATAGTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGAGTGGTATTTCCAAGAATATTACATTCAAAACAACTATAGTAATA  500

seq1  TTTCCAATAAATATGTTTGCAATGTTTCTGATCATCTGTAGACATCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATAAATATGTTTGCAATGTTTCTGATCATCTGTAGACATCCATG  550

seq1  TCATCTGTTTTTCATTCATAAAAACTACATACGTAGGTATCATGCTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTTTTTCATTCATAAAAACTACATACGTAGGTATCATGCTCAGA  600

seq1  AAGAAAATGTATGCACAGCATGACCTACTTTTAAAGCACTGGATATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGTATGCACAGCATGACCTACTTTTAAAGCACTGGATATTTTT  650

seq1  CTCAGAAAGAATTAAGAGCTATTATGAATAAAACAAAAAGATGTATACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAGAATTAAGAGCTATTATGAATAAAACAAAAAGATGTATACCA  700

seq1  ATAAAATAAGTGTAAAAATCACTTTTCAATGTAGTACAAATGAACTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAGTGTAAAAATCACTTTTCAATGTAGTACAAATGAACTGTCT  750

seq1  TTATTTTCAACCAATAATTTTAGGCATGTTGCTATTAATATATTATAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCAACCAATAATTTTAGGCATGTTGCTATTAATATATTATAGTA  800

seq1  TAATATATTATTTATTATATATTAAGTC-TTTCAGTTCTTAAAATATA--  847
      |||||||||||||||||||||||||||| |||||||||||||||||||  
seq2  TAATATATTATTTATTATATATTAAGTCTTTTCAGTTCTTAAAATATAAT  850

seq1  TTTAAGCACATAGTTATATACTCAGTTGCCTATTCTAATGAACAAATTC-  896
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTAAAGCACATAGTTATATACTCAGTTGCCTATTCTAATGAACAAATTCT  900

seq1  TTTTGTAAAGGAAAAAGTAGCCTTCCTTAAAATAGGCTAAACTTTG-ATA  945
      ||||||||||| ||||||||||||||||||||   ||||||||||| |||
seq2  TTTTGTAAAGG-AAAAGTAGCCTTCCTTAAAAATAGCTAAACTTTGAATA  949

seq1  CTGTAACTACAT--ATACTTTCCCTATACTATCATCAAATTTCCATTTGG  993
      |||| |||||||   |||||||||||||||||||||||  || |||||||
seq2  CTGT-ACTACATTATTACTTTCCCTATACTATCATCAA--TTTCATTTGG  996

seq1  CAATGC-CAGAAATACTTTTTGCCTTATAGGAGATTTTTTTCGAAGATTT  1042
      ||||||  | |||||||||||| |||||||||||||||||||||||| ||
seq2  CAATGCAGAAAAATACTTTTTG-CTTATAGGAGATTTTTTTCGAAGA-TT  1044

seq1  ATTTAATTTTATAAGTGTTTTGCCTCCAAGTATATAAGTACACCATATGT  1092
      |||  | ||||||||||||| || ||  ||||||  ||||||||||||||
seq2  ATT--AATTTATAAGTGTTTGGCTTC--AGTATA-GAGTACACCATATGT  1089

seq1  GT  1094
      ||
seq2  GT  1091


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