BAC Information

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BAC

Clone NameB6Ng01-250K23
Chromosome1 (Build37)10 (Build37)
Map Location 193,595,857 - 193,597,041108,960,040 - 108,960,281
singlet/doubletsingletsinglet
Overlap geneLpgat1
Upstream geneRps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7
Downstream geneNek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1, Hhat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250K23.bB6Ng01-250K23.g
ACCGA058162GA058163
length1,188288
definitionB6Ng01-250K23.b B6Ng01-250K23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(193,595,857 - 193,597,041)(108,960,040 - 108,960,281)
sequence
gaattcttgaaagaacactgtgatttctggattatctgccattttaaatg
gggactggcacagagggcagggcagtgtttggaccaagactttatcctac
catctgcccagagctacctggatgttctcttaactaaaacatggctagga
gggcagagcaaacacccctctcaagggcactccggttctttactctgctt
gttgggttaccacaggattaaaatattaaaatgagtaatcttctagcata
gtgagagcaaatgcattaatacctcttctctcgtagcaaaatagaaaggt
ttttgggaaagttaagaaaataaacttaggtgctctcttcagcagacata
tactaaaaaaaaaaatcggaacgatacagagaagattagcatggcccctg
tacaagggtgacacacaaatttgtgaagcgttccactgaaagaaggaaag
aaagaaagaaagaaagagagagagagagagagagagagagagagagagag
aaaataaacttagacctgtgagatataaacctttataattccaatggata
gctacccaaatgataaacgagcttgtcagtttttaagcaatgaaagttca
tattatctatatcctagaatgtacttttaaataaaaagcattttccccaa
atccataaaatcctatctaagggtaccccatgagattatactttaaagaa
gatataaaataatgtttagcttatagactctaacatctgagttaatatat
ttgaatttttaagccatcctgactatgaaacgagccgacaaacttcgtga
cttggcctcagttcagtcattccaatactcccatacgtgggtagtcttcc
atatgtgagagaggccaatcacggagagagattctgatgttaacagtccc
tcctgattttatgaagctaattatctagcagagggattagaaaagcaagc
cagttaaatacggaagtacttgactttgaagaaccattagctgagtttaa
atgagggtctgaacgtttgctcatggcgaggacatgaaaaagagaccaac
tgagtgcttgtttagaaaagtaagattcagaaactttaaaaatgttttgt
ctaagtacataagccttagcttatgtttcaaaaggttaagcattgccaag
ttagaacaggcaaatctccctgtaccttccctccactg
tcacatgtaccagcttttgttccttagtttaaaactattggttaaagggc
tcccaatggaagagctagagaaagtacccaagaagctaaagggatctgca
accctataggtagaacaacattatgaactaaccagtaccccggagctctt
gactctagctgcatatgtatcaaaagatggcctagtcggccatcactgga
aagagaggcccattggacatgaaaactttatatgccccagtacaggggaa
cgccagggccaaaaagggggagtgggtgggtaggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_193595857_193597041
seq2: B6Ng01-250K23.b_48_1235 (reverse)

seq1  CAGTGGAGGGAAGGTACAGGGAGATTTTTGCTG-TCTAACTTGCAATTGC  49
      |||||||||||||||||||||||| |||  ||| |||||||||  | |||
seq2  CAGTGGAGGGAAGGTACAGGGAGA-TTTGCCTGTTCTAACTTGGCAATGC  49

seq1  TTTAACTTTTG-AACATAA-CTAA-GCTTATGTTACTTAGACAAAACATT  96
      || | |||||| ||||||| |||| ||||||| |||||||||||||||||
seq2  TTAACCTTTTGAAACATAAGCTAAGGCTTATG-TACTTAGACAAAACATT  98

seq1  TTTAAAG-TTCTGAATCTTACTTTTCTAAAC-AGCACTCAGTTGGTCTCT  144
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTAAAGTTTCTGAATCTTACTTTTCTAAACAAGCACTCAGTTGGTCTCT  148

seq1  TTTTCATGTCCTTCGCCATGAGCAAACGTTCAGACCCTCATTTAAACTCA  194
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGTCC-TCGCCATGAGCAAACGTTCAGACCCTCATTTAAACTCA  197

seq1  GCTAATGGTTCTTCAAAGTCAAGTACTTCCGTATTTAACTGGCTTGCTTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGGTTCTTCAAAGTCAAGTACTTCCGTATTTAACTGGCTTGCTTT  247

seq1  TCTAATCCCTCTGCTAGATAATTAGCTTCATAAAATCAGGAGGGACTGTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCCCTCTGCTAGATAATTAGCTTCATAAAATCAGGAGGGACTGTT  297

seq1  AACATCAGAATCTCTCTCCGTGATTGGCCTCTCTCACATATGGAAGACTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGAATCTCTCTCCGTGATTGGCCTCTCTCACATATGGAAGACTA  347

seq1  CCCACGTATGGGAGTATTGGAATGACTGAACTGAGGCCAAGTCACGAAGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGTATGGGAGTATTGGAATGACTGAACTGAGGCCAAGTCACGAAGT  397

seq1  TTGTCGGCTCGTTTCATAGTCAGGATGGCTTAAAAATTCAAATATATTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGGCTCGTTTCATAGTCAGGATGGCTTAAAAATTCAAATATATTAA  447

seq1  CTCAGATGTTAGAGTCTATAAGCTAAACATTATTTTATATCTTCTTTAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATGTTAGAGTCTATAAGCTAAACATTATTTTATATCTTCTTTAAA  497

seq1  GTATAATCTCATGGGGTACCCTTAGATAGGATTTTATGGATTTGGGGAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATCTCATGGGGTACCCTTAGATAGGATTTTATGGATTTGGGGAAA  547

seq1  ATGCTTTTTATTTAAAAGTACATTCTAGGATATAGATAATATGAACTTTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTTATTTAAAAGTACATTCTAGGATATAGATAATATGAACTTTC  597

seq1  ATTGCTTAAAAACTGACAAGCTCGTTTATCATTTGGGTAGCTATCCATTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTAAAAACTGACAAGCTCGTTTATCATTTGGGTAGCTATCCATTG  647

seq1  GAATTATAAAGGTTTATATCTCACAGGTCTAAGTTTATTTTCTCTCTCTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATAAAGGTTTATATCTCACAGGTCTAAGTTTATTTTCTCTCTCTC  697

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCCTTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCCTTC  747

seq1  TTTCAGTGGAACGCTTCACAAATTTGTGTGTCACCCTTGTACAGGGGCCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGGAACGCTTCACAAATTTGTGTGTCACCCTTGTACAGGGGCCA  797

seq1  TGCTAATCTTCTCTGTATCGTTCCGATTTTTTTTTTTAGTATATGTCTGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATCTTCTCTGTATCGTTCCGATTTTTTTTTTTAGTATATGTCTGC  847

seq1  TGAAGAGAGCACCTAAGTTTATTTTCTTAACTTTCCCAAAAACCTTTCTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAGCACCTAAGTTTATTTTCTTAACTTTCCCAAAAACCTTTCTA  897

seq1  TTTTGCTACGAGAGAAGAGGTATTAATGCATTTGCTCTCACTATGCTAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTACGAGAGAAGAGGTATTAATGCATTTGCTCTCACTATGCTAGA  947

seq1  AGATTACTCATTTTAATATTTTAATCCTGTGGTAACCCAACAAGCAGAGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACTCATTTTAATATTTTAATCCTGTGGTAACCCAACAAGCAGAGT  997

seq1  AAAGAACCGGAGTGCCCTTGAGAGGGGTGTTTGCTCTGCCCTCCTAGCCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCGGAGTGCCCTTGAGAGGGGTGTTTGCTCTGCCCTCCTAGCCA  1047

seq1  TGTTTTAGTTAAGAGAACATCCAGGTAGCTCTGGGCAGATGGTAGGATAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGTTAAGAGAACATCCAGGTAGCTCTGGGCAGATGGTAGGATAA  1097

seq1  AGTCTTGGTCCAAACACTGCCCTGCCCTCTGTGCCAGTCCCCATTTAAAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGTCCAAACACTGCCCTGCCCTCTGTGCCAGTCCCCATTTAAAA  1147

seq1  TGGCAGATAATCCAGAAATCACAGTGTTCTTTCAAGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGATAATCCAGAAATCACAGTGTTCTTTCAAGAATTC  1188

seq1: chr10_108960040_108960281
seq2: B6Ng01-250K23.g_117_358

seq1  AGGGCTCCCAATGGAGGAGCTAGAGAAAGAACCCAAGGAGCTAAAGGGAT  50
      ||||||||||||||| ||||||||||||| ||||||| ||||||||||||
seq2  AGGGCTCCCAATGGAAGAGCTAGAGAAAGTACCCAAGAAGCTAAAGGGAT  50

seq1  CTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAG  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGCAACCCTATAGGTAGAACAACATTATGAACTAACCAGTACCCCGGAG  100

seq1  CTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAATCGGCCATCA  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCA  150

seq1  CTGGAAAGAGAGGCCCATTGGACATGTAAACTTTGTATGCCCCAGTACAG  200
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  CTGGAAAGAGAGGCCCATTGGACATGAAAACTTTATATGCCCCAGTACAG  200

seq1  GGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGA  242
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGA  242