BAC Information

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BAC

Clone NameB6Ng01-251H09
Chromosome1 (Build37)
Map Location 174,776,265 - 174,861,453
singlet/doubletdoublet
Overlap geneApcs
Upstream geneCd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875
Downstream geneOlfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251H09.bB6Ng01-251H09.g
ACCGA058717GA058718
length1,146846
definitionB6Ng01-251H09.b B6Ng01-251H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,776,265 - 174,777,409)(174,860,611 - 174,861,453)
sequence
gaattcctcagggatactgatggaagtctccacccaaacaccaatgaacc
ttgatatgatgtccaaggttaggaccatcaggagatacatgtcaggaaag
aagagcaagagagagaaaaaccttcctcgtctgtttttatttctcttgat
ttcatttggacccctagcctagacaacctcagatatcctcagaaatattt
gccagttccctagtcattccttgagtcatccaagttgacacaccaaatta
atgtcactcaatgttcttgggttttagagctccatataggaatttggaga
gcatgcaacatgaagtctatactagactggcaataaaaccatgcccaggg
gattcctatcacaatgaaaaatctgaacaagggtttagcagtgttagtca
atatacttgaaagagaaagggcgagaagagaacgaaaagaaagaagagcg
aggggaagaaggacgagagaatggaagtttaagttggtttttagaagacc
caagaatgagctgaaaatttattgaatttgtaaaaaaaattaaaaatgta
gcagtatatgcaattaaggcaaagaaggcaatatcctttgtatacataaa
caacagccagctagagggctggagggctggagggctggagggctggaggg
ctggggcccccctaatttcctaccaacaggatatcattctctctttcttc
tctttccttcctttgacagcaataggaattaggaacaggcaaaatttctg
ggaatagtctgaagaaacatgcaagagctagttgaagaagactttctaac
tggcccagggacacaaagcggaatttgaatgagcagagaaggacacaatg
ctattgtatagtataacatcagacattaaaggagctgtttccaacaaagc
aaactgactctatagtcccctgagcaaaatgaaaatcaagaatgaccagg
gttttttttcctcccatttaacatagtaccatatatgtttaaaacaggat
gatatttcaacataagtagatagaccagtgcatcagatagaaaggccaga
gaccaagcccagtgcatccaggattcagctccataagaacatcaattcca
aacacgagtgcagaagtaggacttgtccaggcatctgggttgccat
gaattctcagaaacagtaagaggtaaaagacagactagggaaaagccgag
agaaatgagaggggagacagactgagaagcaaaaagatggatgtaaaatg
gggggggggagactagggaagatgtgggctgaaagaaaggtaattaacca
catggtagacatataatagcttaaatgggttaaacaagctattagctaat
caaggaatgagccaaagcatatggcccagacatttaatgataactaatta
gtctcagagtagttggtgggaactaaggggccagaaggaaaaattaggta
gaaagggcatcaagacagcaagcacatagtggtgcacctaggttgctgcc
tccgattggccggatagcagagatagacataaagggcttcaagataagga
attccttcaaaggaatgctcttgatgacttacatcccccaagtaggccta
gttcccaaaagacccattcagctatgaactcgtgcattaaccaatctagt
aaaaactccagcaccttcacgatccagtcacttcatagtaatgccatctg
cttaagatcaagactttaacatgagcctttataggacccttcatatccaa
accacacaaccttccacccctggtcctcagaagctcaattttatatcata
atataaaatgcatttagtatttttctaaggacatttctcaaaattccaaa
ctcaaagtgtcctctgaggctccctatcaaggcagacaatgtttggttgt
gagctcctataaaataaagcaaatataaacagaaacaattgcacagagta
agtaccatcattcccaaaaaggaaaaatgggacaaagaaatggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174776265_174777409
seq2: B6Ng01-251H09.b_49_1194

seq1  GAATTCCTCAGGGATACTGATGGAAGTCTCCACCCAAACACCAATGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGGGATACTGATGGAAGTCTCCACCCAAACACCAATGAACC  50

seq1  TTGATATGATGTCCAAGGTTAGGACCATCAGGAGATACATGTCAGGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATGATGTCCAAGGTTAGGACCATCAGGAGATACATGTCAGGAAAG  100

seq1  AAGAGCAAGAGAGAGAAAAACCTTCCTCGTCTGTTTTTATTTCTCTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAAGAGAGAGAAAAACCTTCCTCGTCTGTTTTTATTTCTCTTGAT  150

seq1  TTCATTTGGACCCCTAGCCTAGACAACCTCAGATATCCTCAGAAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGGACCCCTAGCCTAGACAACCTCAGATATCCTCAGAAATATTT  200

seq1  GCCAGTTCCCTAGTCATTCCTTGAGTCATCCAAGTTGACACACCAAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTCCCTAGTCATTCCTTGAGTCATCCAAGTTGACACACCAAATTA  250

seq1  ATGTCACTCAATGTTCTTGGGTTTTAGAGCTCCATATAGGAATTTGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACTCAATGTTCTTGGGTTTTAGAGCTCCATATAGGAATTTGGAGA  300

seq1  GCATGCAACATGAAGTCTATACTAGACTGGCAATAAAACCATGCCCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAACATGAAGTCTATACTAGACTGGCAATAAAACCATGCCCAGGG  350

seq1  GATTCCTATCACAATGAAAAATCTGAACAAGGGTTTAGCAGTGTTAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTATCACAATGAAAAATCTGAACAAGGGTTTAGCAGTGTTAGTCA  400

seq1  ATATACTTGAAAGAGAAAGGGCGAGAAGAGAACGAAAAGAAAGAAGAGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTGAAAGAGAAAGGGCGAGAAGAGAACGAAAAGAAAGAAGAGCG  450

seq1  AGGGGAAGAAGGACGAGAGAATGGAAGTTTAAGTTGGTTTTTAGAAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAGAAGGACGAGAGAATGGAAGTTTAAGTTGGTTTTTAGAAGACC  500

seq1  CAAGAATGAGCTGAAAATTTATTGAATTTGTAAAAAAAATTAAAAATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGAGCTGAAAATTTATTGAATTTGTAAAAAAAATTAAAAATGTA  550

seq1  GCAGTATATGCAATTAAGGCAAAGAAGGCAATATCCTTTGTATACATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATATGCAATTAAGGCAAAGAAGGCAATATCCTTTGTATACATAAA  600

seq1  CAACAGCCAGCTAGAGGGCTGGAGGGCTGGAGGGCTGGAGGGCTGGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCCAGCTAGAGGGCTGGAGGGCTGGAGGGCTGGAGGGCTGGAGGG  650

seq1  CTGGGGCCCCCCTAATTTCCTACCAACAGGATATCATTCTCTCTTTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCCCCCCTAATTTCCTACCAACAGGATATCATTCTCTCTTTCTTC  700

seq1  TCTTTCCTTCCTTTGACAGCAATAGGAATTAGGAACAGGCAAAATTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTCCTTTGACAGCAATAGGAATTAGGAACAGGCAAAATTTCTG  750

seq1  GGAATAGTCTGAAGAAACATGCAAGAGCTAGTTGAAGAAGACTTTCTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGTCTGAAGAAACATGCAAGAGCTAGTTGAAGAAGACTTTCTAAC  800

seq1  TGGCCCAGGGACACAAAGCGGAATTTGAATGAGCAGAGAAGGACACAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAGGGACACAAAGCGGAATTTGAATGAGCAGAGAAGGACACAATG  850

seq1  CTATTGTATAGTATAACATCAGACATTAAAGGAGCTGTTTCCAACAAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTATAGTATAACATCAGACATTAAAGGAGCTGTTTCCAACAAAGC  900

seq1  AAACTGACTCTATAGTCCCCTGAGCAAAATGAAAATCAAGAATGACCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACTCTATAGTCCCCTGAGCAAAATGAAAATCAAGAATGACCAGG  950

seq1  GTTTTTTT--CTCCCATTTAACATAGTACCATATATG-TTAAAACAGGAT  997
      ||||||||  ||||||||||||||||||||||||||| ||||||||||||
seq2  GTTTTTTTTCCTCCCATTTAACATAGTACCATATATGTTTAAAACAGGAT  1000

seq1  GATAATTTCACATAAGTAGATAGACCAGTGCATCAGGATAGAAAGGCCAG  1047
      |||| ||  |||||||||||||||||||||||||| ||||||||||||||
seq2  GATATTTCAACATAAGTAGATAGACCAGTGCATCA-GATAGAAAGGCCAG  1049

seq1  AGACCAAGCCAAGTGCATCCAGGAATTCAGGCTCCAATAAAGACATCATT  1097
      |||||||||| |||||||||||| ||||| ||||| ||||  |||||| |
seq2  AGACCAAGCCCAGTGCATCCAGG-ATTCA-GCTCC-ATAAGAACATCAAT  1096

seq1  TCAAAACACGAGTGCAG-AGGAAGAC-TGTTCAGGCATCTGGGTTGCCAT  1145
      || |||||||||||||| || | ||| ||| |||||||||||||||||||
seq2  TCCAAACACGAGTGCAGAAGTAGGACTTGTCCAGGCATCTGGGTTGCCAT  1146

seq1: chr1_174860611_174861453
seq2: B6Ng01-251H09.g_67_912 (reverse)

seq1  CCCCCA-TTCTTTGTCCCATTTTTCC-TTTTGGGAATGATGGTACTTACT  48
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  CCCCCATTTCTTTGTCCCATTTTTCCTTTTTGGGAATGATGGTACTTACT  50

seq1  CTGTGCAATTGTTTCTGTTTATATTTGCTTTATTTTATAGGAGCTCACAA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAATTGTTTCTGTTTATATTTGCTTTATTTTATAGGAGCTCACAA  100

seq1  CC-AACATTGTCTGCCTTGATAGGGAGCCTCAGAGGACACTTTGAGTTTG  147
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACATTGTCTGCCTTGATAGGGAGCCTCAGAGGACACTTTGAGTTTG  150

seq1  GAATTTTGAGAAATGTCCTTAGAAAAATACTAAATGCATTTTATATTATG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGAGAAATGTCCTTAGAAAAATACTAAATGCATTTTATATTATG  200

seq1  ATATAAAATTGAGCTTCTGAGGACCAGGGGTGGAAGGTTGTGTGGTTTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATTGAGCTTCTGAGGACCAGGGGTGGAAGGTTGTGTGGTTTGG  250

seq1  ATATGAAGGGTCCTATAAAGGCTCATGTTAAAGTCTTGATCTTAAGCAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGGGTCCTATAAAGGCTCATGTTAAAGTCTTGATCTTAAGCAGA  300

seq1  TGGCATTACTATGAAGTGACTGGATCGTGAAGGTGCTGGAGTTTTTACTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTACTATGAAGTGACTGGATCGTGAAGGTGCTGGAGTTTTTACTA  350

seq1  GATTGGTTAATGCACGAGTTCATAGCTGAATGGGTCTTTTGGGAACTAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTTAATGCACGAGTTCATAGCTGAATGGGTCTTTTGGGAACTAGG  400

seq1  CCTACTTGGGGGATGTAAGTCATCAAGAGCATTCCTTTGAAGGAATTCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTGGGGGATGTAAGTCATCAAGAGCATTCCTTTGAAGGAATTCCT  450

seq1  TATCTTGAAGCCCTTTATGTCTATCTCTGCTATCCGGCCAATCGGAGGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGAAGCCCTTTATGTCTATCTCTGCTATCCGGCCAATCGGAGGCA  500

seq1  GCAACCTAGGTGCACCACTATGTGCTTGCTGTCTTGATGCCCTTTCTACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTAGGTGCACCACTATGTGCTTGCTGTCTTGATGCCCTTTCTACC  550

seq1  TAATTTTTCCTTCTGGCCCCTTAGTTCCCACCAACTACTCTGAGACTAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCCTTCTGGCCCCTTAGTTCCCACCAACTACTCTGAGACTAAT  600

seq1  TAGTTATCATTAAATGTCTGGGCCATATGCTTTGGCTCATTCCTTGATTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATCATTAAATGTCTGGGCCATATGCTTTGGCTCATTCCTTGATTA  650

seq1  GCTAATAGCTTGTTTAACCCATTTAAGCTATTATATGTCTACCATGTGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATAGCTTGTTTAACCCATTTAAGCTATTATATGTCTACCATGTGGT  700

seq1  TAATTACCTTTCTTTCAGCCCACATCTTCCCTAGTCTCCCCCCCCCCATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACCTTTCTTTCAGCCCACATCTTCCCTAGTCTCCCCCCCCCCATT  750

seq1  TTACATCCATCTTTTTGCTTCTCAGTCTGTCTCCCCTCTCATTTCTCTCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCCATCTTTTTGCTTCTCAGTCTGTCTCCCCTCTCATTTCTCTCG  800

seq1  GCTTTTCCCTAGTCTGTCTTTTACCTCTTACTGTTTCTGAGAATTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCCTAGTCTGTCTTTTACCTCTTACTGTTTCTGAGAATTC  846