BAC Information

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BAC

Clone NameB6Ng01-251H13
Chromosome1 (Build37)
Map Location 75,159,670 - 75,291,415
singlet/doubletdoublet
Overlap geneZfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286
Downstream geneDnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251H13.bB6Ng01-251H13.g
ACCGA058725GA058726
length8001,098
definitionB6Ng01-251H13.b B6Ng01-251H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,159,670 - 75,160,469)(75,290,324 - 75,291,415)
sequence
gaattcacaaacattctacctctccatccatgtgctgggattaaagggtt
gtgccaccataaaacaacagcaacattaacaaagccatctactttcaaag
actgcctctagttggtcagtgtctacaatcccagctcctcaccaggctga
ggcgccacacagggatggggaggaccacaaagttgagatcaatcgggaca
atttggagaagaggctccgtgtcaaaataaaaaggaccaggcagtggtgg
tgcactcctttaatcccagcatttgggagccagaagcagaggcaggtgga
tctctgagttcaaggccagcctgggctacagattgagtttcaagacagcc
agggctacacagaaaagcaaaacaaacaaagcaaagcaaaacaagtaaaa
ccaaccaaccaaataaaaaagggaaggagatataacttaatatcatagcc
ctcaacctgtaaatgcttgttttaatccccaaagcggacaggaaaaagac
atcgaaatcaatctggaacttcaaagctatccatcgataagaaagcacac
ctgcttggtatgtgatcactaattaaggttttgtctttaaaaagtgaaga
gatggctcagcggtcaagagcgttgactgctcttccagaggtcctgagta
taattcccagcaaccacatggtggcttaaaccatctgtaatgggatctga
tgccctcttctggtgtctaaagacagttacagtgtactcatatgcataaa
ataaataaataattctttaaaggaggaggaggaagatgaggaggagggaa

gaattccaggacacaacacagagaaactctgcatgtccagaccaaaacaa
aacaaaaaaataaaaacaaaacccacaaacaaaaaaaattcctgagccct
ggcaggtaggcagaagagcaggaattgtcaggctggttggcactgctgtt
ggtggcacccacttgggtgaggagggtggtactgagccaggcccaggaag
actggagcaacgcatctgattctgtcccctgctgccaagcacctggagat
gtgaaaagtgtgattgggattttatcagctcccaccacgagaaggaaacc
caagtcaagggcacagagctgtctacaaggctggtgtgcagcatggtggg
cggccctaactgaagctctggaaaaggaaaggtagtgggtgttgtgtagg
ccaaggtttaaaacaggaagacgagtgtgggaactaggagaaatggttga
tgatgagggttcagcagggagaataggggggaccccgtgggtcagggcac
ttggaaccagaccccaaggccttgggagaagaaggaagaatcactgagtc
caaggaagatggggcagggagccctcatccaatacctgcttcatgaaagg
cccaggttgcgaactccttgaagggatgggctgttagcgcatcatgggaa
gaggcaggagaagagttctaaccactgtcacaccctaccccatccatcct
ggtactaaaatttggtcatcaacatatgactttctggagcagggtggatt
agcaggatgcagatgggtttatggagggcagctacagaagagagtcctct
ctctttctaccggagccactttcagactaacaccggtccctctggcggtt
gtccactagtgaggaagggggggtgctctaccggtcatcaggttcatttg
cttgcttgggaccatttgtcttagagactcggctttcctcccacagcttc
cattcctcactataaatgctgggggctacaagtcttctttacattgttca
ttttaagcttccattttcatcttagaagacatcgaattttttttttttta
catggcaaaattgcctttaaaataattcaactgggcctgagctgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_75159670_75160469
seq2: B6Ng01-251H13.b_45_844

seq1  GAATTCACAAACATTCTACCTCTCCATCCATGTGCTGGGATTAAAGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAACATTCTACCTCTCCATCCATGTGCTGGGATTAAAGGGTT  50

seq1  GTGCCACCATAAAACAACAGCAACATTAACAAAGCCATCTACTTTCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCATAAAACAACAGCAACATTAACAAAGCCATCTACTTTCAAAG  100

seq1  ACTGCCTCTAGTTGGTCAGTGTCTACAATCCCAGCTCCTCACCAGGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTCTAGTTGGTCAGTGTCTACAATCCCAGCTCCTCACCAGGCTGA  150

seq1  GGCGCCACACAGGGATGGGGAGGACCACAAAGTTGAGATCAATCGGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCACACAGGGATGGGGAGGACCACAAAGTTGAGATCAATCGGGACA  200

seq1  ATTTGGAGAAGAGGCTCCGTGTCAAAATAAAAAGGACCAGGCAGTGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGAAGAGGCTCCGTGTCAAAATAAAAAGGACCAGGCAGTGGTGG  250

seq1  TGCACTCCTTTAATCCCAGCATTTGGGAGCCAGAAGCAGAGGCAGGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCCTTTAATCCCAGCATTTGGGAGCCAGAAGCAGAGGCAGGTGGA  300

seq1  TCTCTGAGTTCAAGGCCAGCCTGGGCTACAGATTGAGTTTCAAGACAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGTTCAAGGCCAGCCTGGGCTACAGATTGAGTTTCAAGACAGCC  350

seq1  AGGGCTACACAGAAAAGCAAAACAAACAAAGCAAAGCAAAACAAGTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACACAGAAAAGCAAAACAAACAAAGCAAAGCAAAACAAGTAAAA  400

seq1  CCAACCAACCAAATAAAAAAGGGAAGGAGATATAACTTAATATCATAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAACCAAATAAAAAAGGGAAGGAGATATAACTTAATATCATAGCC  450

seq1  CTCAACCTGTAAATGCTTGTTTTAATCCCCAAAGCGGACAGGAAAAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCTGTAAATGCTTGTTTTAATCCCCAAAGCGGACAGGAAAAAGAC  500

seq1  ATCGAAATCAATCTGGAACTTCAAAGCTATCCATCGATAAGAAAGCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAAATCAATCTGGAACTTCAAAGCTATCCATCGATAAGAAAGCACAC  550

seq1  CTGCTTGGTATGTGATCACTAATTAAGGTTTTGTCTTTAAAAAGTGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGTATGTGATCACTAATTAAGGTTTTGTCTTTAAAAAGTGAAGA  600

seq1  GATGGCTCAGCGGTCAAGAGCGTTGACTGCTCTTCCAGAGGTCCTGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGCGGTCAAGAGCGTTGACTGCTCTTCCAGAGGTCCTGAGTA  650

seq1  TAATTCCCAGCAACCACATGGTGGCTTAAACCATCTGTAATGGGATCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCAGCAACCACATGGTGGCTTAAACCATCTGTAATGGGATCTGA  700

seq1  TGCCCTCTTCTGGTGTCTAAAGACAGTTACAGTGTACTCATATGCATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTTCTGGTGTCTAAAGACAGTTACAGTGTACTCATATGCATAAA  750

seq1  ATAAATAAATAAATCTTTAAAGGAGGAGGAGGAAGAGGAGGAGGAGGGAA  800
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  ATAAATAAATAATTCTTTAAAGGAGGAGGAGGAAGATGAGGAGGAGGGAA  800

seq1: chr1_75290324_75291415
seq2: B6Ng01-251H13.g_68_1165 (reverse)

seq1  CAGACAGCTCA-GCCCAGTGAAATTATTTTAAAGGCAATTTTGCCAGTGT  49
      ||||||||||| |||||||  ||||||||||||||||||||||||| |||
seq2  CAGACAGCTCAGGCCCAGTTGAATTATTTTAAAGGCAATTTTGCCA-TGT  49

seq1  TAAAAAAAAAAAAAAATTCGATGTCTCTTAAGATG-AAATGGAAGCTTAA  98
         |||||||||||||||||||||||  ||||||| ||||||||||||||
seq2  ---AAAAAAAAAAAAATTCGATGTCTTCTAAGATGAAAATGGAAGCTTAA  96

seq1  AATGAACAATGT-AAGAGACCTTGTAG-CCCCAGCATTTTATAGTGAGGA  146
      |||||||||||| ||||   ||||||| |||||||| |||||||||||||
seq2  AATGAACAATGTAAAGAAGACTTGTAGCCCCCAGCA-TTTATAGTGAGGA  145

seq1  ATGG-AGCTGTGGGAGG-AAGCCGAGTCTCTAAGAC-AATGGTCCC-AGC  192
      |||| |||||||||||| |||||||||||||||||| ||||||||| |||
seq2  ATGGAAGCTGTGGGAGGAAAGCCGAGTCTCTAAGACAAATGGTCCCAAGC  195

seq1  AAGCAAATGAACCTGATGACC-GTAG-GCA-CCCCCCTTCCTCACTAGTG  239
      ||||||||||||||||||||| |||| ||| |||||||||||||||||||
seq2  AAGCAAATGAACCTGATGACCGGTAGAGCACCCCCCCTTCCTCACTAGTG  245

seq1  GACAACCGCCAGAGGGACCGGTGTTAGTCTGAAAGTGGCTCCGGTAGAAA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCGCCAGAGGGACCGGTGTTAGTCTGAAAGTGGCTCCGGTAGAAA  295

seq1  GAGAGAGGACTCTCTTCTGTAGCTGCCCTCCATAAACCCATCTGCATCCT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGACTCTCTTCTGTAGCTGCCCTCCATAAACCCATCTGCATCCT  345

seq1  GCTAATCCACCCTGCTCCAGAAAGTCATATGTTGATGACCAAATTTTAGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATCCACCCTGCTCCAGAAAGTCATATGTTGATGACCAAATTTTAGT  395

seq1  ACCAGGATGGATGGGGTAGGGTGTGACAGTGGTTAGAACTCTTCTCCTGC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGATGGATGGGGTAGGGTGTGACAGTGGTTAGAACTCTTCTCCTGC  445

seq1  CTCTTCCCATGATGCGCTAACAGCCCATCCCTTCAAGGAGTTCGCAACCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCATGATGCGCTAACAGCCCATCCCTTCAAGGAGTTCGCAACCT  495

seq1  GGGCCTTTCATGAAGCAGGTATTGGATGAGGGCTCCCTGCCCCATCTTCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTTCATGAAGCAGGTATTGGATGAGGGCTCCCTGCCCCATCTTCC  545

seq1  TTGGACTCAGTGATTCTTCCTTCTTCTCCCAAGGCCTTGGGGTCTGGTTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTCAGTGATTCTTCCTTCTTCTCCCAAGGCCTTGGGGTCTGGTTC  595

seq1  CAAGTGCCCTGACCCACGGGGTCCCCCCTATTCTCCCTGCTGAACCCTCA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCCCTGACCCACGGGGTCCCCCCTATTCTCCCTGCTGAACCCTCA  645

seq1  TCATCAACCATTTCTCCTAGTTCCCACACTCGTCTTCCTGTTTTAAACCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAACCATTTCTCCTAGTTCCCACACTCGTCTTCCTGTTTTAAACCT  695

seq1  TGGCCTACACAACACCCACTACCTTTCCTTTTCCAGAGCTTCAGTTAGGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTACACAACACCCACTACCTTTCCTTTTCCAGAGCTTCAGTTAGGG  745

seq1  CCGCCCACCATGCTGCACACCAGCCTTGTAGACAGCTCTGTGCCCTTGAC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCACCATGCTGCACACCAGCCTTGTAGACAGCTCTGTGCCCTTGAC  795

seq1  TTGGGTTTCCTTCTCGTGGTGGGAGCTGATAAAATCCCAATCACACTTTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTCCTTCTCGTGGTGGGAGCTGATAAAATCCCAATCACACTTTT  845

seq1  CACATCTCCAGGTGCTTGGCAGCAGGGGACAGAATCAGATGCGTTGCTCC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCCAGGTGCTTGGCAGCAGGGGACAGAATCAGATGCGTTGCTCC  895

seq1  AGTCTTCCTGGGCCTGGCTCAGTACCACCCTCCTCACCCAAGTGGGTGCC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCTGGGCCTGGCTCAGTACCACCCTCCTCACCCAAGTGGGTGCC  945

seq1  ACCAACAGCAGTGCCAACCAGCCTGACAATTCCTGCTCTTCTGCCTACCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAGCAGTGCCAACCAGCCTGACAATTCCTGCTCTTCTGCCTACCT  995

seq1  GCCAGGGCTCAGGAATTTTTTTTGTTTGTGGGTTTTGTTTTTATTTTTTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCTCAGGAATTTTTTTTGTTTGTGGGTTTTGTTTTTATTTTTTT  1045

seq1  GTTTTGTTTTGGTCTGGACATGCAGAGTTTCTCTGTGTTGTGTCCTGGAA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGGTCTGGACATGCAGAGTTTCTCTGTGTTGTGTCCTGGAA  1095

seq1  TTC  1092
      |||
seq2  TTC  1098