BAC Information

Click to search

BAC

Clone NameB6Ng01-251M03
Chromosome1 (Build37)
Map Location 186,180,425 - 186,356,790
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666649, 1700056E22Rik, Dusp10
Downstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1, Iars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251M03.bB6Ng01-251M03.g
ACCGA058931GA058932
length6841,198
definitionB6Ng01-251M03.b B6Ng01-251M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(186,180,425 - 186,181,104)(186,355,620 - 186,356,790)
sequence
gaattctcactgggaattaatgagttacctcactgtttacaggtctttag
actgttaagagaacacatggtataagagctgcacaagcatcaaactgggg
ctgatacaagaaggcatttacttactctccccatcggtctaggagtctga
ctggcagaacagacacaggtattccattcaggtattgatcatggagcatc
atctatattgggtgtagctgggggactgcacatgtggccctggcgaggca
cccttcccctaggtgtgctgcaattcagatgccccttgcactcttagtgt
tcaatggctccataatacaaaactgtagcagtaatggtggggtgcttcta
tgtaaatgctgggggggggggtcaactgcaaaagcatctcctgcaggagg
acctaactgagcatgcctgagagaccaagggctgctggtgcagacaatgg
cagccaatcaggaactgctgtttagaagagatgctttcctgggaccaatg
ggggcatgggtggggggtatgaaaggagcttgcagcagggctcagttgag
ccgtttctcacctgctcctagagtctgtgttatactctataccaccctca
tctccaacacctaaggcaggtagggcttggtcggtaagtagtccaaggca
caggctactctaaactcctcttgctgaaagtcag
gaattcctaaatgctgaccgagccagaaccgagcattggaaaaccacttg
gcaggaaccattagtttcaaaatgagatgaactgctctatttagccctca
ttgaaaactttacagaaacgccagatttccataaacacaggtttccttga
gtttccagggctttgattaactggtggacaagagcttcgcagacacagat
tttttgtgttatattcagcctggatgggtttgggatctggaaaccaacac
agagtagtcccttgcctttctgggatgttaactcttccctgacttccaga
aggctccttttgttatagggagtttggagaattaagaattagtttagggt
ttaaaaacgcggttatagatcatattcctgtcagctgtgtcatcatctgt
taagctttttatgactgattgacagcctgctgctttatggtttggctcta
atgccccaaaggaatgagaattaaaaaatacacttctgtccttactgaga
aagtcataaagctgtggcctcggctcagtaaggagattgcttgcaagaca
tattttcgtttttaaatgtgttttcatttttcttctttcggccatattcc
tccattgatcctggcactccagacggtctctaaagtctgtgcagcttaga
tgctcatcaccaaacgttctgcctctgcttctcagcctcccctcctcctc
ttcctctcctcctcctctccatcctcctcctttttcttcttcttcttctt
cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct
tctcctcttcctcctccctcctcctcctcctcctcttctggcttccaagt
ttaagtcaataaaaaacaaaataaaatttgaaggagttaagagccagttt
ttctgtgttctaaaaagctgtttttctttccaagcaagtgagttttgtag
gccaggaaatggccgtgagtttatacatgggattttgttggcctctgtaa
gcatcttccacagtttgttctgtgcttgatactgtttccatggggactat
aatgacagagattatgccagaatgaggaggatgagtttaagcctggcctg
tcttgttttccttaagaggcattggaagcttcaatgggagggaaccaaga
ggaattgagaaagccagctacaactataactatggagttctcgcgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_186180425_186181104
seq2: B6Ng01-251M03.b_45_728

seq1  GAATTCTCACTGGGAATTAATGAGTTACCTCACTGTTTACAGGTCTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTGGGAATTAATGAGTTACCTCACTGTTTACAGGTCTTTAG  50

seq1  ACTGTTAAGAGAACACATGGTATAAGAGCTGCACAAGCATCAAACTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAAGAGAACACATGGTATAAGAGCTGCACAAGCATCAAACTGGGG  100

seq1  CTGATACAAGAAGGCATTTACTTACTCTCCCCATCGGTCTAGGAGTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACAAGAAGGCATTTACTTACTCTCCCCATCGGTCTAGGAGTCTGA  150

seq1  CTGGCAGAACAGACACAGGTATTCCATTCAGGTATTGATCATGGAGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAACAGACACAGGTATTCCATTCAGGTATTGATCATGGAGCATC  200

seq1  ATCTATATTGGGTGTAGCTGGGGGACTGCACATGTGGCCCTGGCGAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATTGGGTGTAGCTGGGGGACTGCACATGTGGCCCTGGCGAGGCA  250

seq1  CCCTTCCCCTAGGTGTGCTGCAATTCAGATGCCCCTTGCACTCTTAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCCTAGGTGTGCTGCAATTCAGATGCCCCTTGCACTCTTAGTGT  300

seq1  TCAATGGCTCCATAATACAAAACTGTAGCAGTAATGGTGGGGTGCTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGCTCCATAATACAAAACTGTAGCAGTAATGGTGGGGTGCTTCTA  350

seq1  TGTAAATGCTGGGGGGGGGGGTCAACTGCAAAAGCATCTCCTGCAGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGCTGGGGGGGGGGGTCAACTGCAAAAGCATCTCCTGCAGGAGG  400

seq1  ACCTAACTGAGCATGCCTGAGAGACCAAGGGCTGCTGGTGCAGACAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACTGAGCATGCCTGAGAGACCAAGGGCTGCTGGTGCAGACAATGG  450

seq1  CAGCCAATCAGGAACTGCTGTTTAGAAGAGATGCTTTCCTGGGACCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAATCAGGAACTGCTGTTTAGAAGAGATGCTTTCCTGGGACCAATG  500

seq1  GGGGCATGGGTGGGGGGTATGAAAGGAGCTTGCAGCAGGGCTCAGTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATGGGTGGGGGGTATGAAAGGAGCTTGCAGCAGGGCTCAGTTGAG  550

seq1  CCGTTTCTCACCTGCTCCTAGAGTCTGTGTTATACTCTATACCA-CCTCA  599
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCGTTTCTCACCTGCTCCTAGAGTCTGTGTTATACTCTATACCACCCTCA  600

seq1  TCTCCAACACCTAAGGCAGGTAGGGC-TGGGCGGTAAGTAGTCCAAGGCA  648
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  TCTCCAACACCTAAGGCAGGTAGGGCTTGGTCGGTAAGTAGTCCAAGGCA  650

seq1  CAGGCAACACAAAACTCCTC-TGCTG-AAGTCAG  680
      ||||| || | ||||||||| ||||| |||||||
seq2  CAGGCTACTCTAAACTCCTCTTGCTGAAAGTCAG  684

seq1: chr1_186355620_186356790
seq2: B6Ng01-251M03.g_67_1264 (reverse)

seq1  TGTCG---GAACTCCAT-GTTAT-GTTGTGCCTGGCTTCCTC-ATTCCTC  44
      |||||   ||||||||| ||||| |||||  ||||||| ||| |||||||
seq2  TGTCGCGAGAACTCCATAGTTATAGTTGTAGCTGGCTTTCTCAATTCCTC  50

seq1  TTGGT--CCTCCCATTGAAAGCTT-CAACCGCTC-TAAGGAAAACAGCA-  89
      |||||  |||||||||| |||||| |||   ||| |||||||||||  | 
seq2  TTGGTTCCCTCCCATTG-AAGCTTCCAATGCCTCTTAAGGAAAACAAGAC  99

seq1  --GCCA-GCTT-AACTCAT-CTTCTCA-TCTTGCATAATCTCTGTCATTT  133
        |||| |||| ||||||| || |||| ||| ||||||||||||||||| 
seq2  AGGCCAGGCTTAAACTCATCCTCCTCATTCTGGCATAATCTCTGTCATTA  149

seq1  AATGTCCCATGG-AACAGTATCAAGCACAGAACAAACTGTGGAAGATGCT  182
       |   ||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCCATGGAAACAGTATCAAGCACAGAACAAACTGTGGAAGATGCT  199

seq1  TACAGAGGCC-ACAAAAT-CCATGTTATAACTCAC-GCCA-TTCCTGGCC  228
      |||||||||| ||||||| ||||||   ||||||| |||| |||||||||
seq2  TACAGAGGCCAACAAAATCCCATGTATAAACTCACGGCCATTTCCTGGCC  249

seq1  TAC-AAACTCACTTGCTTGGAAGG--AAACAGCTTTTTAGAACACAG-AA  274
      ||| |||||||||||||||||| |  ||||||||||||||||||||| ||
seq2  TACAAAACTCACTTGCTTGGAAAGAAAAACAGCTTTTTAGAACACAGAAA  299

seq1  AACTGGCTCTTTACT-CTTCAAA-TTTATTTTGTTTTTTATTGACTTAAA  322
      ||||||||||| ||| ||||||| ||||||||||||||||||||||||||
seq2  AACTGGCTCTTAACTCCTTCAAATTTTATTTTGTTTTTTATTGACTTAAA  349

seq1  CTTGGAAGCCAGAAGAGGAGGAGGAGGAGGAGGGAGGAGGAAGAGGAGAA  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAGCCAGAAGAGGAGGAGGAGGAGGAGGGAGGAGGAAGAGGAGAA  399

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  449

seq1  AGAAGAAGAAGAAGAAAAAGGAGGAGGATGGAGAGGAGGAGGAGAGGAAG  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAAAAGGAGGAGGATGGAGAGGAGGAGGAGAGGAAG  499

seq1  AGGAGGAGGGGAGGCTGAGAAGCAGAGGCAGAACGTTTGGTGATGAGCAT  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGGGAGGCTGAGAAGCAGAGGCAGAACGTTTGGTGATGAGCAT  549

seq1  CTAAGCTGCACAGACTTTAGAGACCGTCTGGAGTGCCAGGATCAATGGAG  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTGCACAGACTTTAGAGACCGTCTGGAGTGCCAGGATCAATGGAG  599

seq1  GAATATGGCCGAAAGAAGAAAAATGAAAACACATTTAAAAACGAAAATAT  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGGCCGAAAGAAGAAAAATGAAAACACATTTAAAAACGAAAATAT  649

seq1  GTCTTGCAAGCAATCTCCTTACTGAGCCGAGGCCACAGCTTTATGACTTT  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCAAGCAATCTCCTTACTGAGCCGAGGCCACAGCTTTATGACTTT  699

seq1  CTCAGTAAGGACAGAAGTGTATTTTTTAATTCTCATTCCTTTGGGGCATT  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAAGGACAGAAGTGTATTTTTTAATTCTCATTCCTTTGGGGCATT  749

seq1  AGAGCCAAACCATAAAGCAGCAGGCTGTCAATCAGTCATAAAAAGCTTAA  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAAACCATAAAGCAGCAGGCTGTCAATCAGTCATAAAAAGCTTAA  799

seq1  CAGATGATGACACAGCTGACAGGAATATGATCTATAACCGCGTTTTTAAA  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGATGACACAGCTGACAGGAATATGATCTATAACCGCGTTTTTAAA  849

seq1  CCCTAAACTAATTCTTAATTCTCCAAACTCCCTATAACAAAAGGAGCCTT  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAACTAATTCTTAATTCTCCAAACTCCCTATAACAAAAGGAGCCTT  899

seq1  CTGGAAGTCAGGGAAGAGTTAACATCCCAGAAAGGCAAGGGACTACTCTG  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGTCAGGGAAGAGTTAACATCCCAGAAAGGCAAGGGACTACTCTG  949

seq1  TGTTGGTTTCCAGATCCCAAACCCATCCAGGCTGAATATAACACAAAAAA  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTTTCCAGATCCCAAACCCATCCAGGCTGAATATAACACAAAAAA  999

seq1  TCTGTGTCTGCGAAGCTCTTGTCCACCAGTTAATCAAAGCCCTGGAAACT  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTGCGAAGCTCTTGTCCACCAGTTAATCAAAGCCCTGGAAACT  1049

seq1  CAAGGAAACCTGTGTTTATGGAAATCTGGCGTTTCTGTAAAGTTTTCAAT  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAACCTGTGTTTATGGAAATCTGGCGTTTCTGTAAAGTTTTCAAT  1099

seq1  GAGGGCTAAATAGAGCAGTTCATCTCATTTTGAAACTAATGGTTCCTGCC  1122
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTAAATAGAGCAGTTCATCTCATTTTGAAACTAATGGTTCCTGCC  1149

seq1  AAGTGGTTTTCCAATGCTCGGTTCTGGCTCGGTCAGCATTTAGGAATTC  1171
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTTTTCCAATGCTCGGTTCTGGCTCGGTCAGCATTTAGGAATTC  1198