BAC Information

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BAC

Clone NameB6Ng01-252D15
Chromosome1 (Build37)
Map Location 36,302,683 - 36,428,847
singlet/doubletdoublet
Overlap geneLOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1
Downstream geneLman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252D15.bB6Ng01-252D15.g
ACCGA059281GA059282
length884248
definitionB6Ng01-252D15.b B6Ng01-252D15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,428,251 - 36,428,847)(36,302,683 - 36,302,931)
sequence
gaattctcttctgtctggaatgaattactggcaaaatcatgcaatttaga
tgagaaaatacaagaagtgagaccatcaagatctatatacaggaaaatcc
atgatgcctcacgggagggggagggctttcttttttctttttaagattta
tttattttatgtatatgagtacactgtggctgtcttcagacacaccagca
gagggcatcggatcccattacaaatggctgtgagccaccatgtggttgct
gggaattgaacttaggacctctggaagaacagtcagttctcttaacccct
gaaccatctctaacccaaggggaggtctttctaatggaaaagtaaaacat
ttggcctcttttttcctttgattttttttttttttaatttgggggacagg
gtttcacatagcccaggttggctctgacttactgttgtatagctgaggct
gttcttgaattcctaatccttctgcctctgaggggataggtagtttgatt
ttatagtaattaatgctaagaaagctacttcatataaagacaggctataa
aatggcagaagtgttctcagaaatgattgggcagtatgccctgataccaa
gctaaaattcacttaacgattgttttaggaagcccaagtcagccattcaa
aatgcaatttctaagactaggcattctgtcacaatccaaagaaatgctac
tttgacacatgctgaaagataggaaaatattaagagcctttgtttttgta
ataaaactatcaggtttctgtaagagcagaaaactttgtgtctacagcaa
aaacactgcaattgataacatacagtagtctaaaatctgagccaaagggg
tttcgaaagatttgttggcactctagctagctaa
aggtctctattgaccagcgctgctcaacagacataaagtgtcagccaggg
caggtgaaatggctcagcaggtaagagtggctggcaacaagtcaagtcta
tggactggagttacacacatacccacaaacaagtaaagtgtgggctacgt
aagcaatttcatttccccttgttagcagtatacttcctgatgatggtgat
taaacccatggcttcctgcattcaatgtatacgctttaccactgatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_36428251_36428847
seq2: B6Ng01-252D15.b_45_641 (reverse)

seq1  GTATCAGGGCATACTGCCCAATCATTTCTGAGAACACTTCTGCCATTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGGGCATACTGCCCAATCATTTCTGAGAACACTTCTGCCATTTTA  50

seq1  TAGCCTGTCTTTATATGAAGTAGCTTTCTTAGCATTAATTACTATAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGTCTTTATATGAAGTAGCTTTCTTAGCATTAATTACTATAAAAT  100

seq1  CAAACTACCTATCCCCTCAGAGGCAGAAGGATTAGGAATTCAAGAACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTACCTATCCCCTCAGAGGCAGAAGGATTAGGAATTCAAGAACAGC  150

seq1  CTCAGCTATACAACAGTAAGTCAGAGCCAACCTGGGCTATGTGAAACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTATACAACAGTAAGTCAGAGCCAACCTGGGCTATGTGAAACCCT  200

seq1  GTCCCCCAAATTAAAAAAAAAAAAAATCAAAGGAAAAAAGAGGCCAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCAAATTAAAAAAAAAAAAAATCAAAGGAAAAAAGAGGCCAAATG  250

seq1  TTTTACTTTTCCATTAGAAAGACCTCCCCTTGGGTTAGAGATGGTTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTTCCATTAGAAAGACCTCCCCTTGGGTTAGAGATGGTTCAGG  300

seq1  GGTTAAGAGAACTGACTGTTCTTCCAGAGGTCCTAAGTTCAATTCCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGAGAACTGACTGTTCTTCCAGAGGTCCTAAGTTCAATTCCCAGC  350

seq1  AACCACATGGTGGCTCACAGCCATTTGTAATGGGATCCGATGCCCTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATGGTGGCTCACAGCCATTTGTAATGGGATCCGATGCCCTCTGC  400

seq1  TGGTGTGTCTGAAGACAGCCACAGTGTACTCATATACATAAAATAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTCTGAAGACAGCCACAGTGTACTCATATACATAAAATAAATAA  450

seq1  ATCTTAAAAAGAAAAAAGAAAGCCCTCCCCCTCCCGTGAGGCATCATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAAAGAAAAAAGAAAGCCCTCCCCCTCCCGTGAGGCATCATGGA  500

seq1  TTTTCCTGTATATAGATCTTGATGGTCTCACTTCTTGTATTTTCTCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGTATATAGATCTTGATGGTCTCACTTCTTGTATTTTCTCATCT  550

seq1  AAATTGCATGATTTTGCCAGTAATTCATTCCAGACAGAAGAGAATTC  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCATGATTTTGCCAGTAATTCATTCCAGACAGAAGAGAATTC  597

seq1: chr1_36302683_36302931
seq2: B6Ng01-252D15.g_73_320

seq1  AGGTCTCTACATGACCAGCGCTGCTCAACAGACATAAAGTGTCAGCCAGG  50
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTA-TTGACCAGCGCTGCTCAACAGACATAAAGTGTCAGCCAGG  49

seq1  GCAGGTGAGATGGCTCAGCAGGTAAGAGTGGCTGGCAACAAGTCAAGTCT  100
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGAAATGGCTCAGCAGGTAAGAGTGGCTGGCAACAAGTCAAGTCT  99

seq1  ATGGACTGGAGTTACACACATACCCACAAACAAGTAAAGTGTGGGCTACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTGGAGTTACACACATACCCACAAACAAGTAAAGTGTGGGCTACG  149

seq1  TAAGCAATTTCATTTCCCCTTGTTAGCAGTATACTTCCTGATGATGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAATTTCATTTCCCCTTGTTAGCAGTATACTTCCTGATGATGGTGA  199

seq1  TTAAACCCATGGCTTCATGCATTCAATGTATACGCTTTACCACTGAGGC  249
      |||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  TTAAACCCATGGCTTCCTGCATTCAATGTATACGCTTTACCACTGATGC  248