BAC Information

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BAC

Clone NameB6Ng01-252J11
Chromosome1 (Build37)
Map Location 170,306,098 - 170,306,912
singlet/doubletsinglet
Overlap genePbx1
Upstream geneMgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252J11.bB6Ng01-252J11.g
ACCGA059544GA059545
length1,221823
definitionB6Ng01-252J11.b B6Ng01-252J11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattctcccatgttttatttatttatttttttagctctaaaaaaa
aattcccaatcatgctgattatttcaaagacccgtgttggttccattgat
ttttttctattccatttatttcttctctagtctttaagtcccccatggtt
tcttcattgacccaatggttgtttcttagtttgttagaaatgtctcacta
tcacttcattgatcacactcaaacattcttctgtgactgaagaaaatgtt
gctcaaggtagtttctgctcaaatctactgaactaattcattgctagaga
cttgatttgttctgtaaaatagtccataaatacttgagaaaatgtgtaag
tagaccatggtatacaagccattaggtatagttggtgaattatctttatt
tatcttctaatatccatcaatgagtacaaagaattgaagattctcagcac
actgttaaagtatttctcactttaattctgtctgctcttgcttcatctat
ctaaatgatctgtggttagctataaaacatttataactgttatatctttt
ccctgaattaagcttttccttaatatgtgatgtcttttgtctccaaggcg
ttatacatgacatctgtttttttctgatgttagtatgttcatacctgctg
actctgattgcattttcgtgaaatatatttctctgttctttccgttttaa
tctttcacatatatgtccttgggtctaaaaggatagtcttaagtattgaa
ccacatatttctatccagcatgttgattgatgtcttttgattacaatgtc
tgatctaagaaaatataaaggagctactaataaggacttatttctctcct
ttgctcttagtttgtcattcacctttcctgtgctcctggcttctttgtgg
gttagcacaaatgctatagtgaaatattcaaatccattccctttatcttc
tctatattctaaagatatttctttgtggttataatggcatttacacttag
catcctacaggtacacttttattaaatttgtaaaaaaaatcattaggaca
taaaaacatgtctccttatatgtctgcctccattcatcttccatctattg
agattataaggttatattttggattatgtatcgcatggcattaactctat
atgcttcatgcctagtctctctaatctatagcagaaccgcatgagtgtat
acataggtagagtcgtcgcaa

gaattcttcaggcaacggagaggatcaccgaagcagagcttagttaaaaa
ccccagctgaatttggcagccctactgttctttggagcagcatctaagta
gtactgcaggagagagcgtaaagattgttcacttgggtataatttttttg
agaaaagagaaagtgaagatttatctcccactcttacatttctttttcca
aattataagatcatcagattcggcactagacctatagaacgaaagagaaa
cgagagagggaaaaaatgcgcagtaaggcggtaaggccggacacagttct
tttcaaggttgaagcacatgaacctactcagcccgtagggtttctcctgc
cagcaacgggattactgtctctagaacagtcaactttacagtctgttctt
agaacccataagtagtgcttttaaatgttggttaataatgtgctcgactc
tatttatgggggaggggtgtttaatctttctcaaagagttaagacaaggt
cactttataaatggacagcaacgacaggaagtgattacagctcacctagc
acagggcttccagagaacaatcaaatcaagattcctgctcccagaaaggg
ctcctgtccactgggaggcagcaaaggctgccagaaagagaaatgggccc
gagcttggagaacctgggttctagtcccctgcaagtatctttatcttaga
atctttgggcaagtgtactgtggccagccataggattctgcctaaaactt
tatggcagacaataaaagaaaaaaattaaactagagttgacgaagcacgt
tggtggtaaaggatagaagcggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170306098_170306912
seq2: B6Ng01-252J11.g_75_897

seq1  GAATTCTTCAGGCAACGGAGAGGATCACCGAAGCAGAGCTTAGTTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGGCAACGGAGAGGATCACCGAAGCAGAGCTTAGTTAAAAA  50

seq1  CCCCAGCTGAATTTGGCAGCCCTACTGTTCTTTGGAGCAGCATCTAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCTGAATTTGGCAGCCCTACTGTTCTTTGGAGCAGCATCTAAGTA  100

seq1  GTACTGCAGGAGAGAGCGTAAAGATTGTTCACTTGGGTATAATTTTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCAGGAGAGAGCGTAAAGATTGTTCACTTGGGTATAATTTTTTTG  150

seq1  AGAAAAGAGAAAGTGAAGATTTATCTCCCACTCTTACATTTCTTTTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAGAAAGTGAAGATTTATCTCCCACTCTTACATTTCTTTTTCCA  200

seq1  AATTATAAGATCATCAGATTCGGCACTAGACCTATAGAACGAAAGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAGATCATCAGATTCGGCACTAGACCTATAGAACGAAAGAGAAA  250

seq1  CGAGAGAGGGAAAAAATGCGCAGTAAGGCGGTAAGGCCGGACACAGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGAGGGAAAAAATGCGCAGTAAGGCGGTAAGGCCGGACACAGTTCT  300

seq1  TTTCAAGGTTGAAGCACATGAACCTACTCAGCCCGTAGGGTTTCTCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGTTGAAGCACATGAACCTACTCAGCCCGTAGGGTTTCTCCTGC  350

seq1  CAGCAACGGGATTACTGTCTCTAGAACAGTCAACTTTACAGTCTGTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACGGGATTACTGTCTCTAGAACAGTCAACTTTACAGTCTGTTCTT  400

seq1  AGAACCCATAAGTAGTGCTTTTAAATGTTGGTTAATAATGTGCTCGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCATAAGTAGTGCTTTTAAATGTTGGTTAATAATGTGCTCGACTC  450

seq1  TATTTATGGGGGAGGGGTGTTTAATCTTTCTCAAAGAGTTAAGACAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGGGGGAGGGGTGTTTAATCTTTCTCAAAGAGTTAAGACAAGGT  500

seq1  CACTTTATAAATGGACAGCAACGACAGGAAGTGATTACAGCTCACCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTATAAATGGACAGCAACGACAGGAAGTGATTACAGCTCACCTAGC  550

seq1  ACAGGGCTTCCAGAGAACAATCAAATCAAGATTCCTGCTCCCAGAAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCTTCCAGAGAACAATCAAATCAAGATTCCTGCTCCCAGAAAGGG  600

seq1  CT-CTGTCCACTGGGAGGCAGCAAAGGCTGCCAGAAAGAGAAATGGGCCC  649
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTCCACTGGGAGGCAGCAAAGGCTGCCAGAAAGAGAAATGGGCCC  650

seq1  GAGCTTGGAG-ACCTGGGTTCTAGT-CCCTGCAAGTATCTTTATCTTAGA  697
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  GAGCTTGGAGAACCTGGGTTCTAGTCCCCTGCAAGTATCTTTATCTTAGA  700

seq1  ATCTT--GGCAAGTGTACTGTGGCCAGCCATAGGATTCTGCCTAAAAC-T  744
      |||||  ||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCTTTGGGCAAGTGTACTGTGGCCAGCCATAGGATTCTGCCTAAAACTT  750

seq1  TAGGGCAGACAAAAAAAG-AAAAAATTAAACAAGAGATGACGAAGCACGT  793
      || ||||||||| ||||| |||||||||||| |||| |||||||||||||
seq2  TATGGCAGACAATAAAAGAAAAAAATTAAACTAGAGTTGACGAAGCACGT  800

seq1  AGGTGGTAAA-GATAGAAGCTGT  815
       ||||||||| ||||||||| ||
seq2  TGGTGGTAAAGGATAGAAGCGGT  823


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