BAC Information

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BAC

Clone NameB6Ng01-252J18
Chromosome1 (Build37)
Map Location 59,700,986 - 59,879,191
singlet/doubletdoublet
Overlap geneSumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2
Upstream geneAls2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973
Downstream geneAls2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252J18.bB6Ng01-252J18.g
ACCGA059558GA059559
length1,0661,168
definitionB6Ng01-252J18.b B6Ng01-252J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,878,130 - 59,879,191)(59,700,986 - 59,702,187)
sequence
gaattcaagacctctgggagtgcaaccaatgctcttaaccactgagccat
ctctccagctccaaaattcctttatttttttaatggtagtaattaatctt
cctagaagataaaataagtaactatgcttcaattgccaaaactgaaaaaa
gagcaatgacttttttattttttcatattttgaacagagattaaagtcct
tatcaactagaattggctggtaattgtggtggtctgaatgaaaatggacc
tcataggcccacagggagtggcactattaggacaggtagaagtgtgtaac
taggggtgtggagagggagcttttgaggtcttagatgctcaagcttagtg
cctgactctttttccgctgtctgctgatctgctgatagaactctcagcca
tctctccagcctctgtgtgatcatgcttccaaccatgataataatggaat
aaatcccaaaactctaagtcagccccaattaaatgctctcctttatgata
gttgccatgatcagggtatctcttcacaacaaccaaaactataattaata
cagtaatctacaataagagtagaatctatattgtaaatagaatagtgttc
atatagctcttttcaatattaataattaagggctagtatttaattacttt
aaaagacactacatttatgtttcaataaaaggaacccatagactttatat
tcttttaaatcttttaataacagcccacaaaaacaaggattgatagtcta
tagagattttattgctatgtggtcatctcatggtttctaaaaaacctatg
aaatatagttttataataattctcaagaatcactgggtggaggggttcag
gattttaaccccagcactcaagaaacaggcaggtgggatttctgtgagtt
taaggtcagccctggattatggaagagaaactctgtctcaaaattaaaac
aaaacaaaaatggagaaaaaatttcataaaaatctattacttttaaacgt
aaaacctaaggctaaataaataataaattaatttctccatagttcctaac
tttacattcaaattat
gaattcaacccaggtcccttggaagagcagccagagctgagccatatttc
cagccccaagaaaatatattaattatagatttaaatttgaaatgtggcct
aaagctcatggttagaacagggcaactccactgtaatcacctaaaaggct
tgcttcactgttgtataccacatataaaccatccagacaaaaatattcat
ctgagcagtcagtaaaaatgagttacttttaaattatttctatgttctac
taattcaaattctgaaatgggtcacaagaggaaaaggataacattaggca
tttccttgagttcctaatggtgaaaacagaatgtcttttggcaaagcact
gtatttaatgtcacaatatacaaacctgtctttgacagtatgattctttg
agtttcttgagatgtgttgtcattttcactttgaaatgtatctcactgct
atcctaaggagataaaagaaacattgtttatctacactacttagttaact
tgaaccaaattatttaattttgccttgtcaattaaagttttccaccaaaa
tattctttttagcattcctaactagtttcagtacagcaatctaatcaact
tccaagtaactttttaggcaacccattaaaaaaattcgtaaaacagatgt
tttggtatcaaaattattaatataaatttgtctatcaaagaatgcattcc
tttatgacagcatatccatcaaaatactgtaaaataaaaaagaaccatca
cagtgagcagtggtggcacacgcctttaatcccagcactcaggaggcaga
ggcaggtggatttctgatttcgaggtcaacctggtctacagagtgagttc
caggacatccagggctacacagagaaaccctatctcaaaaaaacaaaaca
aaataaataaataaataaataaattaaataagtgaaccatcagaaaccct
caaagcaactaaaacaaaacatactctccattcataccaactaaagtgtc
cctgagtggtcaaactagagaaaaatataaactttaaaataacatagaaa
cttttctagcatgagtgactcaatgagctatttctctacattaataaact
tggtatcagttggcctaagctgcgatggatacttgtcttattctcaatcc
cagcatctctctctgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59878130_59879191
seq2: B6Ng01-252J18.b_51_1115 (reverse)

seq1  TAATTTG-ATGTAAAGTTAGG-ACTATGGAG-AATTTATTTATTATTTTA  47
      ||||||| ||||||||||||| ||||||||| |||| |||||||| ||||
seq2  TAATTTGAATGTAAAGTTAGGAACTATGGAGAAATTAATTTATTA-TTTA  49

seq1  TTTA-CCTTTAGTTTTACGTTTTAAAAAGTTATAGA-TTTTATGAATTTT  95
      |||| ||||  |||||||||||  |||||| ||||| ||||||||| |||
seq2  TTTAGCCTTAGGTTTTACGTTT--AAAAGTAATAGATTTTTATGAAATTT  97

seq1  TTTCTCCATTTTTGTTTTTGTTTTTATTTTTGAGACAGGGTTTCTC-TCC  144
      ||||||||||||||||||   ||||| ||||||||||| ||||||| |||
seq2  TTTCTCCATTTTTGTTTT--GTTTTAATTTTGAGACAGAGTTTCTCTTCC  145

seq1  ATAATCCA-GGCTGACCTTAAACTCACAGAAAT-CCACCTGCCTGTTTCT  192
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  ATAATCCAGGGCTGACCTTAAACTCACAGAAATCCCACCTGCCTGTTTCT  195

seq1  TGAGTGCTGGGGTTAAAATCCTGAACCCCTCCACCCAGTGATTCTTGAGA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTGGGGTTAAAATCCTGAACCCCTCCACCCAGTGATTCTTGAGA  245

seq1  ATTATTATAAAACTATATTTCATAGGTTTTTTAGAAACCATGAGATGACC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATAAAACTATATTTCATAGGTTTTTTAGAAACCATGAGATGACC  295

seq1  ACATAGCAATAAAATCTCTATAGACTATCAATCCTTGTTTTTGTGGGCTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCAATAAAATCTCTATAGACTATCAATCCTTGTTTTTGTGGGCTG  345

seq1  TTATTAAAAGATTTAAAAGAATATAAAGTCTATGGGTTCCTTTTATTGAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAAGATTTAAAAGAATATAAAGTCTATGGGTTCCTTTTATTGAA  395

seq1  ACATAAATGTAGTGTCTTTTAAAGTAATTAAATACTAGCCCTTAATTATT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATGTAGTGTCTTTTAAAGTAATTAAATACTAGCCCTTAATTATT  445

seq1  AATATTGAAAAGAGCTATATGAACACTATTCTATTTACAATATAGATTCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGAAAAGAGCTATATGAACACTATTCTATTTACAATATAGATTCT  495

seq1  ACTCTTATTGTAGATTACTGTATTAATTATAGTTTTGGTTGTTGTGAAGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTATTGTAGATTACTGTATTAATTATAGTTTTGGTTGTTGTGAAGA  545

seq1  GATACCCTGATCATGGCAACTATCATAAAGGAGAGCATTTAATTGGGGCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCTGATCATGGCAACTATCATAAAGGAGAGCATTTAATTGGGGCT  595

seq1  GACTTAGAGTTTTGGGATTTATTCCATTATTATCATGGTTGGAAGCATGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGAGTTTTGGGATTTATTCCATTATTATCATGGTTGGAAGCATGA  645

seq1  TCACACAGAGGCTGGAGAGATGGCTGAGAGTTCTATCAGCAGATCAGCAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGAGGCTGGAGAGATGGCTGAGAGTTCTATCAGCAGATCAGCAG  695

seq1  ACAGCGGAAAAAGAGTCAGGCACTAAGCTTGAGCATCTAAGACCTCAAAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGGAAAAAGAGTCAGGCACTAAGCTTGAGCATCTAAGACCTCAAAA  745

seq1  GCTCCCTCTCCACACCCCTAGTTACACACTTCTACCTGTCCTAATAGTGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTCTCCACACCCCTAGTTACACACTTCTACCTGTCCTAATAGTGC  795

seq1  CACTCCCTGTGGGCCTATGAGGTCCATTTTCATTCAGACCACCACAATTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTGTGGGCCTATGAGGTCCATTTTCATTCAGACCACCACAATTA  845

seq1  CCAGCCAATTCTAGTTGATAAGGACTTTAATCTCTGTTCAAAATATGAAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAATTCTAGTTGATAAGGACTTTAATCTCTGTTCAAAATATGAAA  895

seq1  AAATAAAAAAGTCATTGCTCTTTTTTCAGTTTTGGCAATTGAAGCATAGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAAGTCATTGCTCTTTTTTCAGTTTTGGCAATTGAAGCATAGT  945

seq1  TACTTATTTTATCTTCTAGGAAGATTAATTACTACCATTAAAAAAATAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTTTATCTTCTAGGAAGATTAATTACTACCATTAAAAAAATAAA  995

seq1  GGAATTTTGGAGCTGGAGAGATGGCTCAGTGGTTAAGAGCATTGGTTGCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTGGAGCTGGAGAGATGGCTCAGTGGTTAAGAGCATTGGTTGCA  1045

seq1  CTCCCAGAGGTCTTGAATTC  1062
      ||||||||||||||||||||
seq2  CTCCCAGAGGTCTTGAATTC  1065

seq1: chr1_59700986_59702187
seq2: B6Ng01-252J18.g_68_1235

seq1  GAATTCAACCCAGGTCCCTTGGAAGAGCAGCCAGAGCTGAGCCATATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCAGGTCCCTTGGAAGAGCAGCCAGAGCTGAGCCATATTTC  50

seq1  CAGCCCCAAGAAAATATATTAATTATAGATTTAAATTTGAAATGTGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAAGAAAATATATTAATTATAGATTTAAATTTGAAATGTGGCCT  100

seq1  AAAGCTCATGGTTAGAACAGGGCAACTCCACTGTAATCACCTAAAAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCATGGTTAGAACAGGGCAACTCCACTGTAATCACCTAAAAGGCT  150

seq1  TGCTTCACTGTTGTATACCACATATAAACCATCCAGACAAAAATATTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCACTGTTGTATACCACATATAAACCATCCAGACAAAAATATTCAT  200

seq1  CTGAGCAGTCAGTAAAAATGAGTTACTTTTAAATTATTTCTATGTTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGTCAGTAAAAATGAGTTACTTTTAAATTATTTCTATGTTCTAC  250

seq1  TAATTCAAATTCTGAAATGGGTCACAAGAGGAAAAGGATAACATTAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAAATTCTGAAATGGGTCACAAGAGGAAAAGGATAACATTAGGCA  300

seq1  TTTCCTTGAGTTCCTAATGGTGAAAACAGAATGTCTTTTGGCAAAGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGAGTTCCTAATGGTGAAAACAGAATGTCTTTTGGCAAAGCACT  350

seq1  GTATTTAATGTCACAATATACAAACCTGTCTTTGACAGTATGATTCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAATGTCACAATATACAAACCTGTCTTTGACAGTATGATTCTTTG  400

seq1  AGTTTCTTGAGATGTGTTGTCATTTTCACTTTGAAATGTATCTCACTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTGAGATGTGTTGTCATTTTCACTTTGAAATGTATCTCACTGCT  450

seq1  ATCCTAAGGAGATAAAAGAAACATTGTTTATCTACACTACTTAGTTAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAGGAGATAAAAGAAACATTGTTTATCTACACTACTTAGTTAACT  500

seq1  TGAACCAAATTATTTAATTTTGCCTTGTCAATTAAAGTTTTCCACCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAAATTATTTAATTTTGCCTTGTCAATTAAAGTTTTCCACCAAAA  550

seq1  TATTCTTTTTAGCATTCCTAACTAGTTTCAGTACAGCAATCTAATCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTTAGCATTCCTAACTAGTTTCAGTACAGCAATCTAATCAACT  600

seq1  TCCAAGTAACTTTTTAGGCAACCCATTAAAAAAATTCGTAAAACAGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTAACTTTTTAGGCAACCCATTAAAAAAATTCGTAAAACAGATGT  650

seq1  TTTGGTATCAAAATTATTAATATAAATTTGTCTATCAAAGAATGCATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTATCAAAATTATTAATATAAATTTGTCTATCAAAGAATGCATTCC  700

seq1  TTTATGACAGCATATCCATCAAAATACTGTAAAATAAAAAAGAACCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACAGCATATCCATCAAAATACTGTAAAATAAAAAAGAACCATCA  750

seq1  CAGTGAGCAGTGGTGGCACACGCCTTTAATCCCAGCACTCAGGAGGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCAGTGGTGGCACACGCCTTTAATCCCAGCACTCAGGAGGCAGA  800

seq1  GGCAGGTGGATTTCTGATTTCGAGGTCAACCTGGTCTACAGAGTGAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGGATTTCTGATTTCGAGGTCAACCTGGTCTACAGAGTGAGTTC  850

seq1  CAGGACATCCAGGGCTACACAGAGAAACCCTATCTCAAAAAAAACAAAAA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  CAGGACATCCAGGGCTACACAGAGAAACCCTATCTC-AAAAAAACAAAA-  898

seq1  CAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAGTGAACCAT  950
        ||||||||   |||||||   ||||||| |||   | |||||||||||
seq2  -CAAAATAAA--TAAATAAA--TAAATAAATTAA---ATAAGTGAACCAT  940

seq1  CAGAAACCCTCAAAAGCAACTAAAACAAAACATACTCTCCCATTCATACC  1000
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  CAGAAACCCTC-AAAGCAACTAAAACAAAACATACTCT-CCATTCATACC  988

seq1  AACTAAAGTGTCCCTGAAGGTGGTCAAACCTAGAAGAAAAATATAAACTT  1050
      |||||||||||||||||  ||||||||| |||| ||||||||||||||||
seq2  AACTAAAGTGTCCCTGA--GTGGTCAAA-CTAG-AGAAAAATATAAACTT  1034

seq1  TAAAATAACATAGAAAACCTTTTTCTAGCATGAAGTGACTCATTGAAGCT  1100
      ||||||||||||||||    |||||||||||| ||||||||| || ||||
seq2  TAAAATAACATAGAAA---CTTTTCTAGCATG-AGTGACTCAATG-AGCT  1079

seq1  GGTTTCTCTACAATAAATAAAACCTTTGGTGATTCAGGTTTGGGCTAAAG  1150
        ||||||||| || ||||||    |||||   ||||  |||| || |||
seq2  -ATTTCTCTAC-ATTAATAAA---CTTGGT--ATCAG--TTGGCCT-AAG  1119

seq1  CTGCGGAGTGGAGTACTTGTCTTAGACTCCATCCCCAGCATC-CTCTCTG  1199
      |||||   |||| |||||||||||  ||| || ||||||||| |||||||
seq2  CTGCG--ATGGA-TACTTGTCTTATTCTCAAT-CCCAGCATCTCTCTCTG  1165

seq1  CTG  1202
      |||
seq2  CTG  1168