BAC Information

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BAC

Clone NameB6Ng01-252K21
Chromosome1 (Build37)
Map Location 40,126,706 - 40,320,333
singlet/doubletdoublet
Overlap geneIl1r2, Il1r1
Upstream geneNpas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4
Downstream geneIl1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252K21.bB6Ng01-252K21.g
ACCGA059610GA059611
length9981,185
definitionB6Ng01-252K21.b B6Ng01-252K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,319,336 - 40,320,333)(40,126,706 - 40,127,899)
sequence
gaattcataaggaacatacatagaaatgcacaggcagttatagaccattc
tgttttgacaggcaggtcctctgcgattctgaacttgctatacctatttt
ggctatttgtggaacttccagtaacctgtctcagaaccgcagcacagact
ggaaaccactgtcccagatgggcttccttgcacagcccagttcctctgct
cccgtcacacattttccatctaccgacctccaaacagggacctttgaacc
cgtgtctggtctctctgccacatctcagtttaaatcggttccacattccc
cctttctctaagccattcttcgggggcttctgagaggacctttcctagtc
aatgttctatgaggttggcctttggtttcttgtttctatttttgtttttg
tttttgtttttgttttgtcttgagccctttaccgagcagaaagccacaag
tgaactggcagtgacagctgacaagaatgaatagcagacatcatcagagc
aatgaagcgttttgttttaacttccttcatacgcagaggaaaagatgaca
gatgtcacaagctaattacaagcttcagtgcaggttggtcttgctcagcc
atcactgagcaaataaccaacagaggtgctgtgcctggctgtgctcatat
taacagagaagcatggccatgtactgacgggactaacaaaaccagattgg
tgaggaggtagctcctctctcctctctcttccttcccctccctcttccca
tctttctcaacctttgtctgtttcatgatcgcttaaatatgagaaactca
cagcaccagtagcggaacttttgtgacccactaggctatttcccacaact
ccccctggtgctctaaatatgcctactgaaactgtcagacccagtcatat
gccagacaaagagcgtgaccctccttaaatcccccttcatttcctcttta
tgtctctatattgtacgagtacatatattgtccgtgtgtgtgtgtgtg
gaattctttgccacattctctgcatttgaacaagcctaaggctccacgtt
aacatttacttaggggagttagatatcacaggccaccctgctttaacaga
caacacatgcattatgctgccacagattctgtgtcctctctcacaacact
tgggaccagaaatacttcagttttttttttgaagaattttggaatatttg
tatataattattgggatatctcagtcataagacttaaactaatcagggaa
tccattcatatttcatatacacattttattattttatttatagttcatat
acattttatgcagtgtgtggtcttaagtaatagtttatacaatattttta
atatttttttccgtggggctggagagatggctcagtaggtaagagcactg
actgctcttccagaggtcctgagttcaaatcccagcaaccacatggtggc
tcacagccatccataatgagatctgacgccctcttcttgtgtgtctgaat
acagctactgtgtatttatttataataataaataaacctttgggctcgag
tgagcagggactgagcaagcggagttaagtggagcgagcagactgactgg
agtgagaggggttgaccggagcgaacagaagtcctaaattcaattcctaa
caaccacgtgaaggctcaccaccatctgtacagctgcagtgtactcatat
acataaaataaaaaaataactctttgaaaaaataattttatgcatgaaac
aaaatgtcaaggtatggacttttgtgatgtcatttttgtattccagatgt
ttaagtttgagggcctgctacagtttgaatgtgaaatgctgcctggaaag
cctagaagacggctcacaaactgaggaggttttgagatgtgttgggatca
ggaaggctctaaattcatgaatggatgaacccactggtagactcccagtt
tggaggcacttgttgggagaaagtgggaatgctagtgaatgcgatcttgt
tggaggaaaggcagcactggagccctgtatattgaccccttctctctctc
tgtgtcctcctggcaccagagatcttgcacttgctctgctcttcccaaga
tcctgccttcactgcaggctcaagaatgaatggaacccagactaggacta
aactgtagacccaggctgcaataagtctttccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_40319336_40320333
seq2: B6Ng01-252K21.b_47_1044 (reverse)

seq1  CACACACACACACACGGAC-ATATATGTACTCGTACAATATAGAGACATA  49
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CACACACACACACACGGACAATATATGTACTCGTACAATATAGAGACATA  50

seq1  AAGAGGAAATGAAGGGGGATTTAAGGAGGGTCACGCTCTTTTGTCTGGCA  99
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGAGGAAATGAAGGGGGATTTAAGGAGGGTCACGCTC-TTTGTCTGGCA  99

seq1  TATGACTGGGTCTGACAGTTTCAGTAGGCATATTTAGAGCACCAGGGGGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTGGGTCTGACAGTTTCAGTAGGCATATTTAGAGCACCAGGGGGA  149

seq1  GTTGTGGGAAATAGCCTAGTGGGTCACAAAAGTTCCGCTACTGGTGCTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGGAAATAGCCTAGTGGGTCACAAAAGTTCCGCTACTGGTGCTGT  199

seq1  GAGTTTCTCATATTTAAGCGATCATGAAACAGACAAAGGTTGAGAAAGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTCATATTTAAGCGATCATGAAACAGACAAAGGTTGAGAAAGAT  249

seq1  GGGAAGAGGGAGGGGAAGGAAGAGAGAGGAGAGAGGAGCTACCTCCTCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGGGAGGGGAAGGAAGAGAGAGGAGAGAGGAGCTACCTCCTCAC  299

seq1  CAATCTGGTTTTGTTAGTCCCGTCAGTACATGGCCATGCTTCTCTGTTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGGTTTTGTTAGTCCCGTCAGTACATGGCCATGCTTCTCTGTTAA  349

seq1  TATGAGCACAGCCAGGCACAGCACCTCTGTTGGTTATTTGCTCAGTGATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCACAGCCAGGCACAGCACCTCTGTTGGTTATTTGCTCAGTGATG  399

seq1  GCTGAGCAAGACCAACCTGCACTGAAGCTTGTAATTAGCTTGTGACATCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCAAGACCAACCTGCACTGAAGCTTGTAATTAGCTTGTGACATCT  449

seq1  GTCATCTTTTCCTCTGCGTATGAAGGAAGTTAAAACAAAACGCTTCATTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTTTCCTCTGCGTATGAAGGAAGTTAAAACAAAACGCTTCATTG  499

seq1  CTCTGATGATGTCTGCTATTCATTCTTGTCAGCTGTCACTGCCAGTTCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGATGTCTGCTATTCATTCTTGTCAGCTGTCACTGCCAGTTCAC  549

seq1  TTGTGGCTTTCTGCTCGGTAAAGGGCTCAAGACAAAACAAAAACAAAAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCTTTCTGCTCGGTAAAGGGCTCAAGACAAAACAAAAACAAAAAC  599

seq1  AAAAACAAAAATAGAAACAAGAAACCAAAGGCCAACCTCATAGAACATTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAATAGAAACAAGAAACCAAAGGCCAACCTCATAGAACATTG  649

seq1  ACTAGGAAAGGTCCTCTCAGAAGCCCCCGAAGAATGGCTTAGAGAAAGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAAAGGTCCTCTCAGAAGCCCCCGAAGAATGGCTTAGAGAAAGGG  699

seq1  GGAATGTGGAACCGATTTAAACTGAGATGTGGCAGAGAGACCAGACACGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTGGAACCGATTTAAACTGAGATGTGGCAGAGAGACCAGACACGG  749

seq1  GTTCAAAGGTCCCTGTTTGGAGGTCGGTAGATGGAAAATGTGTGACGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGGTCCCTGTTTGGAGGTCGGTAGATGGAAAATGTGTGACGGGA  799

seq1  GCAGAGGAACTGGGCTGTGCAAGGAAGCCCATCTGGGACAGTGGTTTCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAACTGGGCTGTGCAAGGAAGCCCATCTGGGACAGTGGTTTCCA  849

seq1  GTCTGTGCTGCGGTTCTGAGACAGGTTACTGGAAGTTCCACAAATAGCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGCTGCGGTTCTGAGACAGGTTACTGGAAGTTCCACAAATAGCCA  899

seq1  AAATAGGTATAGCAAGTTCAGAATCGCAGAGGACCTGCCTGTCAAAACAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGTATAGCAAGTTCAGAATCGCAGAGGACCTGCCTGTCAAAACAG  949

seq1  AATGGTCTATAACTGCCTGTGCATTTCTATGTATGTTCCTTATGAATTC  998
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCTATAACTGCCTGTGCATTTCTATGTATGTTCCTTATGAATTC  998

seq1: chr1_40126706_40127899
seq2: B6Ng01-252K21.g_71_1255

seq1  GAATTCTTTGCCACATTCTCTGCATTTGAACAAGCCTAAGGCTCCACGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCCACATTCTCTGCATTTGAACAAGCCTAAGGCTCCACGTT  50

seq1  AACATTTACTTAGGGGAGTTAGATATCACAGGCCACCCTGCTTTAACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTACTTAGGGGAGTTAGATATCACAGGCCACCCTGCTTTAACAGA  100

seq1  CAACACATGCATTATGCTGCCACAGATTCTGTGTCCTCTCTCACAACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACATGCATTATGCTGCCACAGATTCTGTGTCCTCTCTCACAACACT  150

seq1  TGGGACCAGAAATACTTCAGTTTTTTTTTTGAAGAATTTTGGAATATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCAGAAATACTTCAGTTTTTTTTTTGAAGAATTTTGGAATATTTG  200

seq1  TATATAATTATTGGGATATCTCAGTCATAAGACTTAAACTAATCAGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATTATTGGGATATCTCAGTCATAAGACTTAAACTAATCAGGGAA  250

seq1  TCCATTCATATTTCATATACACATTTTATTATTTTATTTATAGTTCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCATATTTCATATACACATTTTATTATTTTATTTATAGTTCATAT  300

seq1  ACATTTTATGCAGTGTGTGGTCTTAAGTAATAGTTTATACAATATTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTATGCAGTGTGTGGTCTTAAGTAATAGTTTATACAATATTTTTA  350

seq1  ATATTTTTTTCCGTGGGGCTGGAGAGATGGCTCAGTAGGTAAGAGCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTTCCGTGGGGCTGGAGAGATGGCTCAGTAGGTAAGAGCACTG  400

seq1  ACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGC  450

seq1  TCACAGCCATCCATAATGAGATCTGACGCCCTCTTCTTGTGTGTCTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCCATCCATAATGAGATCTGACGCCCTCTTCTTGTGTGTCTGAAT  500

seq1  ACAGCTACTGTGTATTTATTTATAATAATAAATAAACCTTTGGGCTCGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACTGTGTATTTATTTATAATAATAAATAAACCTTTGGGCTCGAG  550

seq1  TGAGCAGGGACTGAGCAAGCGGAGTTAAGTGGAGCGAGCAGACTGACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGGACTGAGCAAGCGGAGTTAAGTGGAGCGAGCAGACTGACTGG  600

seq1  AGTGAGAGGGGTTGACCGGAGCGAACAGAAGTCCTAAATTCAATTCCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGGGGTTGACCGGAGCGAACAGAAGTCCTAAATTCAATTCCTAA  650

seq1  CAACCACGTGAAGGCTCACCACCATCTGTACAGCTGCAGTGTACTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACGTGAAGGCTCACCACCATCTGTACAGCTGCAGTGTACTCATAT  700

seq1  ACATAAAATAAAAAAATAACTC-TTGAAAAAATAATTTTATGCATGAAAC  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACATAAAATAAAAAAATAACTCTTTGAAAAAATAATTTTATGCATGAAAC  750

seq1  AAAATGTCAAGGTATGGACTTTTGTGATGTCATTTTTGTATTCCAGATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCAAGGTATGGACTTTTGTGATGTCATTTTTGTATTCCAGATGT  800

seq1  TTAAGTTTGAGGGCCTGCTACAGTTTGAATGTGAAATGCTGCCTGGAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTGAGGGCCTGCTACAGTTTGAATGTGAAATGCTGCCTGGAAAG  850

seq1  CCTAGAAGACGGCTCACAAACTGAGGAGGTTTTGAGATGTTGTTGGATCA  899
      ||||||||||||||||||||||||||||||||||||||||  | ||||||
seq2  CCTAGAAGACGGCTCACAAACTGAGGAGGTTTTGAGATGTGTTGGGATCA  900

seq1  GGAAGGCTCTAAATTCATGAATGGATGAACCCACTGGTAGACTCCCAGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCTCTAAATTCATGAATGGATGAACCCACTGGTAGACTCCCAGTT  950

seq1  TGGAGGCAC-TGTTGGGAGAAAGTGGGAATGCTAGTGAATGCGACCTGGT  998
      ||||||||| |||||||||||||||||||||||||||||||||| || ||
seq2  TGGAGGCACTTGTTGGGAGAAAGTGGGAATGCTAGTGAATGCGATCTTGT  1000

seq1  TGGAGG-AAGGCAGCCACTGGAGCCCTGTATATTTGACCCCCTTTCTCTC  1047
      |||||| ||||||| ||||||||||||||||| ||||||||  |||||||
seq2  TGGAGGAAAGGCAG-CACTGGAGCCCTGTATA-TTGACCCC--TTCTCTC  1046

seq1  TCTCTGTGTCCTCTCTGCCACCAGAGATCTGCCACTTGCTCTGCTCTCCC  1097
      ||||||||||||| ||| ||||||||||||  ||||||||||||||| ||
seq2  TCTCTGTGTCCTC-CTGGCACCAGAGATCTTGCACTTGCTCTGCTCTTCC  1095

seq1  CAAAGATTCTCTGCC-TCACTGCAGGCTC-AGGATGGATGGAACCACAGA  1145
      | |||||   ||||| ||||||||||||| || ||| |||||||| ||||
seq2  C-AAGAT--CCTGCCTTCACTGCAGGCTCAAGAATGAATGGAACC-CAGA  1141

seq1  CTACGGACTAAAACCTGTAAAACCACAGGCTGCAATAAATCTTCCCACC  1194
      ||| ||||||||  ||||| |  | ||||||||||||| |||| |||||
seq2  CTA-GGACTAAA--CTGTAGA--CCCAGGCTGCAATAAGTCTTTCCACC  1185