BAC Information

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BAC

Clone NameB6Ng01-252N04
Chromosome1 (Build37)
Map Location 37,100,018 - 37,234,016
singlet/doubletdoublet
Overlap geneA230074B11Rik, 4921511C04Rik
Upstream geneHs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053
Downstream geneCnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252N04.bB6Ng01-252N04.g
ACCGA059715GA059716
length1,079943
definitionB6Ng01-252N04.b B6Ng01-252N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,100,018 - 37,101,087)(37,233,080 - 37,234,016)
sequence
gaattcctagtagttcagcccaggagactgggtgcccaggtctggtgcta
gagtatcggaggattcctagaggatgctggtcttcagcctacattgtacc
cctgaaggagtaggcgctaacaccagcaaaggaatgcctcagcaacaggg
taatgaacttgccagtgagagtgagggcaagcaagcaaaaagaaaaagct
tccttctttatgtccattcatgtgggctgcctccagaaggtgtggcccag
atttagggcgggtcttcccatctcaaaggatccaatcaagaaaatccctc
acaggaatgctaagggacttgttttcagctgatttcagaagtggtcaagt
agacaactagtatccatcacaatcctcaacagatacttggcagaacacag
catttgcattaaaacccattcaattctatatgttatcgctagatgattta
taatacccaacacagtataaatgctgtgtgaatacatcttatatcatatt
ggataggaaataataacaataaataacctgttcatagtcagtatccatgc
agttcatttttagatattttctaccctaggttggttgaatttgagaatat
aggccctgtggatagagagggccgactgtttttaataatttaaaattgga
cctctgggttttggtgaactagaactgtttttaaactggtccacattaaa
atcaccacagagcagaggtgtctttgcccacataaacccaccgccacacc
ccctgagatctttctgtgacttttcctaggtctacaggaaatggggaaca
accacctgcttaaccccagaaagggtccgttgaatctagcccacggaacc
agagtttatagggtttactcaaaagggtacaagggactcattggcaattt
gcatcattggaaaaagccgcacaacacagttttcatgcccaagggccctg
aaagctgaggtctcagagaagccatgaggtatggcaggggctggggcatg
gctcagtggaacaagcacttgttgagcattgcgcaaggtcccaaggttcc
atccctggccgccacgatgctgcagagaa
gaattctctaagcttatttggccgcacctacagttttggggaacactttg
gaaaacccaagttttggtaggcgtttggcaacgggcaggggtccggggat
agtcatcaagatggtaaggattcaggaactcccagagattggtagaatca
aagactgggatgaaggaggacctagggtgtttgatataaagagatgggga
ccgtgtcctcagtgtcagaagggttgtcccctggacaaagaaaggagtgg
tgttccaagtacagacatggaagccatggggaagatcactgtgatggttt
gtatatactcagcctagggagtggcactattagaagtgtggccttgttgg
aggaagtgtgtcactgtgggtgtgggctttaagattctcatcctagctgc
ctggaatccagtcttctgctatcagccttcagaagatgcagaactctcag
ctcctcctgcaccatgcctgcctagatgctgccctgctcccaccttgatg
ataatggactgaacctctgaatctgtaagccagccccaatgaaatgttgt
cctttataagacttgtcttggtcatgggatctgttcacagcagtaaaacc
ctaactaagacagtcacacacaggtacagatggtttttgcaaagaggctc
tcagtgatcaggggaagggtgctggaggcatgttgtgggtctgagccagg
aagtaggaacaggccaaggctagcccattttgacccctccttggcttgtg
ccatgcaagaaaacagcaacatgagtcttcgaagggctttccttctgtgc
cctgccatcccacctgggtgtcaagatggtggcaggaggaaggaccaggc
atggtgtagtgcttatgcatctgtaatcagatgacaacacattggtatgt
ctcatttgtgaaaggcacacttggtggggggggttgggggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_37100018_37101087
seq2: B6Ng01-252N04.b_46_1124

seq1  GAATTCCTAGTAGTTCAGCCCAGGAGACTGGGTGCCCAGGTCTGGTGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTAGTTCAGCCCAGGAGACTGGGTGCCCAGGTCTGGTGCTA  50

seq1  GAGTATCGGAGGATTCCTAGAGGATGCTGGTCTTCAGCCTACATTGTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATCGGAGGATTCCTAGAGGATGCTGGTCTTCAGCCTACATTGTACC  100

seq1  CCTGAAGGAGTAGGCGCTAACACCAGCAAAGGAATGCCTCAGCAACAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGAGTAGGCGCTAACACCAGCAAAGGAATGCCTCAGCAACAGGG  150

seq1  TAATGAACTTGCCAGTGAGAGTGAGGGCAAGCAAGCAAAAAGAAAAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACTTGCCAGTGAGAGTGAGGGCAAGCAAGCAAAAAGAAAAAGCT  200

seq1  TCCTTCTTTATGTCCATTCATGTGGGCTGCCTCCAGAAGGTGTGGCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTATGTCCATTCATGTGGGCTGCCTCCAGAAGGTGTGGCCCAG  250

seq1  ATTTAGGGCGGGTCTTCCCATCTCAAAGGATCCAATCAAGAAAATCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGGCGGGTCTTCCCATCTCAAAGGATCCAATCAAGAAAATCCCTC  300

seq1  ACAGGAATGCTAAGGGACTTGTTTTCAGCTGATTTCAGAAGTGGTCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATGCTAAGGGACTTGTTTTCAGCTGATTTCAGAAGTGGTCAAGT  350

seq1  AGACAACTAGTATCCATCACAATCCTCAACAGATACTTGGCAGAACACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTAGTATCCATCACAATCCTCAACAGATACTTGGCAGAACACAG  400

seq1  CATTTGCATTAAAACCCATTCAATTCTATATGTTATCGCTAGATGATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCATTAAAACCCATTCAATTCTATATGTTATCGCTAGATGATTTA  450

seq1  TAATACCCAACACAGTATAAATGCTGTGTGAATACATCTTATATCATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCCAACACAGTATAAATGCTGTGTGAATACATCTTATATCATATT  500

seq1  GGATAGGAAATAATAACAATAAATAACCTGTTCATAGTCAGTATCCATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGAAATAATAACAATAAATAACCTGTTCATAGTCAGTATCCATGC  550

seq1  AGTTCATTTTTAGATATTTTCTACCCTAGGTTGGTTGAATTTGAGAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTTTTAGATATTTTCTACCCTAGGTTGGTTGAATTTGAGAATAT  600

seq1  AGGCCCTGTGGATAGAGAGGGCCGACTGTTTTTAATAATTTAAAATTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGTGGATAGAGAGGGCCGACTGTTTTTAATAATTTAAAATTGGA  650

seq1  CCTCTGGG-TTTGGTGAACTAGAACTG-TTTTAAACTGGTCCACATTAAA  698
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  CCTCTGGGTTTTGGTGAACTAGAACTGTTTTTAAACTGGTCCACATTAAA  700

seq1  ATCACCACAGAGCAGAGGTGTCTTTGCCCACATAAACCCACCGCCACACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCACAGAGCAGAGGTGTCTTTGCCCACATAAACCCACCGCCACACC  750

seq1  CCCTGAGATCTTTCTGTGACTTTTCCTAGGTCTACAGGAA--TGGGAACA  796
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  CCCTGAGATCTTTCTGTGACTTTTCCTAGGTCTACAGGAAATGGGGAACA  800

seq1  ACCACCTGCTTAACCCCAGAAAGGGTCCGTTGAATCTAGCCCACGGAACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGCTTAACCCCAGAAAGGGTCCGTTGAATCTAGCCCACGGAACC  850

seq1  AGAGTTTATAGGGTTTACTCAAAAGGGTACAAGGGACTCAATGGCAA-TT  895
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  AGAGTTTATAGGGTTTACTCAAAAGGGTACAAGGGACTCATTGGCAATTT  900

seq1  GCATCATTGGGAAAAAGCCGCACAACACAG-TTTCATG-CCAAGGGCCCT  943
      |||||||| ||||||||||||||||||||| ||||||| |||||||||||
seq2  GCATCATT-GGAAAAAGCCGCACAACACAGTTTTCATGCCCAAGGGCCCT  949

seq1  GAAAGCTGAGGTCTTCAGAGAAGCCATGAGGTATGGCAGGGGCTGGGGCA  993
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGAGGTC-TCAGAGAAGCCATGAGGTATGGCAGGGGCTGGGGCA  998

seq1  TGGCTCAGTGG-ACAAGCACTTGTTGAGCA-TGCGCAAAGTCCC-AGGTT  1040
      ||||||||||| |||||||||||||||||| ||||||| ||||| |||||
seq2  TGGCTCAGTGGAACAAGCACTTGTTGAGCATTGCGCAAGGTCCCAAGGTT  1048

seq1  CCATCCCTGG-CGCCACGATGCTGCAGAGAA  1070
      |||||||||| ||||||||||||||||||||
seq2  CCATCCCTGGCCGCCACGATGCTGCAGAGAA  1079

seq1: chr1_37233080_37234016
seq2: B6Ng01-252N04.g_70_1011 (reverse)

seq1  ATCCCCCA---CCCCCCACC-AGTGTGCCTTCCACAAATGAGACATACCA  46
      ||||||||   ||||||||| |||||||||| ||||||||||||||||||
seq2  ATCCCCCAACCCCCCCCACCAAGTGTGCCTTTCACAAATGAGACATACCA  50

seq1  ATGTGTTGTCATCTGATTACAGATGCATAAGCACTACACCATGCCTGGTC  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTGTCATCTGATTACAGATGCATAAGCACTACACCATGCCTGGTC  100

seq1  CTTCCTCCTGCCACCATCTTGACACCCAGGTGGGATGGCAGGGCACAGAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTGCCACCATCTTGACACCCAGGTGGGATGGCAGGGCACAGAA  150

seq1  GGAAAGCCCTTCGAAGACTCATGTTGCTGTTTTCTTGCATGGCACAAGCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCCCTTCGAAGACTCATGTTGCTGTTTTCTTGCATGGCACAAGCC  200

seq1  AAGGAGGGGTC-AAATGGGCTAGCCTTGGCCTGTTCCTACTTCCTGGCTC  245
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGGTCAAAATGGGCTAGCCTTGGCCTGTTCCTACTTCCTGGCTC  250

seq1  AGACCCACAACATGCCTCCAGCACCCTTCCCCTGATCACTGAGAGCCTCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCACAACATGCCTCCAGCACCCTTCCCCTGATCACTGAGAGCCTCT  300

seq1  TTGCAAAAACCATCTGTACCTGTGTGTGACTGTCTTAGTTAGGGTTTTAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAAACCATCTGTACCTGTGTGTGACTGTCTTAGTTAGGGTTTTAC  350

seq1  TGCTGTGAACAGATCCCATGACCAAGACAAGTCTTATAAAGGACAACATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAACAGATCCCATGACCAAGACAAGTCTTATAAAGGACAACATT  400

seq1  TCATTGGGGCTGGCTTACAGATTCAGAGGTTCAGTCCATTATCATCAAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGGGCTGGCTTACAGATTCAGAGGTTCAGTCCATTATCATCAAGG  450

seq1  TGGGAGCAGGGCAGCATCTAGGCAGGCATGGTGCAGGAGGAGCTGAGAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCAGGGCAGCATCTAGGCAGGCATGGTGCAGGAGGAGCTGAGAGT  500

seq1  TCTGCATCTTCTGAAGGCTGATAGCAGAAGACTGGATTCCAGGCAGCTAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCTTCTGAAGGCTGATAGCAGAAGACTGGATTCCAGGCAGCTAG  550

seq1  GATGAGAATCTTAAAGCCCACACCCACAGTGACACACTTCCTCCAACAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAATCTTAAAGCCCACACCCACAGTGACACACTTCCTCCAACAAG  600

seq1  GCCACACTTCTAATAGTGCCACTCCCTAGGCTGAGTATATACAAACCATC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTTCTAATAGTGCCACTCCCTAGGCTGAGTATATACAAACCATC  650

seq1  ACAGTGATCTTCCCCATGGCTTCCATGTCTGTACTTGGAACACCACTCCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATCTTCCCCATGGCTTCCATGTCTGTACTTGGAACACCACTCCT  700

seq1  TTCTTTGTCCAGGGGACAACCCTTCTGACACTGAGGACACGGTCCCCATC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTCCAGGGGACAACCCTTCTGACACTGAGGACACGGTCCCCATC  750

seq1  TCTTTATATCAAACACCCTAGGTCCTCCTTCATCCCAGTCTTTGATTCTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATATCAAACACCCTAGGTCCTCCTTCATCCCAGTCTTTGATTCTA  800

seq1  CCAATCTCTGGGAGTTCCTGAATCCTTACCATCTTGATGACTATCCCCGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTCTGGGAGTTCCTGAATCCTTACCATCTTGATGACTATCCCCGG  850

seq1  ACCCCTGCCCGTTGCCAAACGCCTACCAAAACTTGGGTTTTCCAAAGTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGCCCGTTGCCAAACGCCTACCAAAACTTGGGTTTTCCAAAGTGT  900

seq1  TCCCCAAAACTGTAGGTGCGGCCAAATAAGCTTAGAGAATTC  937
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAAACTGTAGGTGCGGCCAAATAAGCTTAGAGAATTC  942