BAC Information

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BAC

Clone NameB6Ng01-253E09
Chromosome1 (Build37)
Map Location 99,681,038 - 99,850,370
singlet/doubletdoublet
Overlap geneZh2c2, Pam, LOC100041823
Upstream geneSlco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1
Downstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253E09.bB6Ng01-253E09.g
ACCGA060054GA060055
length9871,051
definitionB6Ng01-253E09.b B6Ng01-253E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,849,387 - 99,850,370)(99,681,038 - 99,682,077)
sequence
gaattctttctgcctgcacaataaaatgatattatccaatcaggatcaaa
tcacagcattcaacactagaatgtgaatggtacctttggtttcccaaaac
aaaaattactggttttatgtcaacagcttctacatgtaatagtatacagc
tggttttgtttgtcccataataatttaaataagcagttggctttattagc
ctccctctccacagaaactattgtatctcagttctttgaaaagacaaaat
aaaaacaaagactattatttgttattttaagatggccactatctttataa
gtccccatggttaaaaatacttagtaatcaaatctgacaggagatcctaa
gcagcaaggtacccactctgtatttctagcataccattttctttttcaga
aaaaaaaaatactttttaaatatagttcccaattgcctcagtaaagaggc
atcaacatcgtcatatctctcttgactctgagatggctgatataccaaca
gatagtactggaaattgtggctgtgtagggtcctcttatttctccctttt
gtacatctgagccttatgctagcagttggaatctgcaggactttgcagaa
agtcccctggcactaagctctggtacagtgttctttccatggtgtgaaca
caagcaatcacgatgacgacgatgtggggaaggttgtgagtggtgggact
ggattgtagaggcctcctccccagggactgtgtgcttacagtgaacagtg
aggtcctctgttgctgtcttccgctggtcttagggagaagcattgaactg
agttataaatatgtgttgaaatgacttaacttttcagaaacacagttgtg
agcactgaatagctgtgggtctgcaccagctcactgctttctatcatcga
gccgctatgaaatatttacaggtgctattaggaatttcaggggacttgga
gcaagcttcttcttaagcttttttgggtttttgtttt

gaattctgtttttccttaaggtgcttagactaccaaagcttaattaataa
gcttctgtctttaaaatgaagttagtaatacatcataaaattgtcttagc
atgttatgacaaaaatgtaagacaaaactaatatgtggatcagactcagt
ctgtaggactttacccaaatgcatgtgttttatctaaatgcctgtggcca
atggaagacaaaatctgggtttcttgaaatttttttaagccagagggaaa
gtgtgaactttaagcagtctgttttcttttcatattttttagatcaatgt
agaactatatagattatttggtgcaaaagagattgtaatttctcgtgctt
ctggaagtgttaatccagctgaaaacacacctagcaccatcaaaacattc
ctctccaaacactgtgccgaccaccccaacagctgggatgagcatctgcc
agccctttcctttgccttcaatgtcactcacttggtaggtgcctttttta
ttattcattgctcattctaaattccagggatatgaaagggtttggggagg
gttgttttatttaattacaaatgtcctggttttctttaaaataggagcct
aataaaaacacaccgtatttccaaatgttcaatcggaatccttgcgtgtt
ggagtgtcctcctgaagagggcagtgaaggtacaagtgtgtttgccagaa
tcgtagctgcgattagagaggctgatggcgtggtggagaacaagacacca
gcatcgagccaggtgattctatctactaggaaagttccctttgtggaccc
ctaccaaagaggaattgtgtttaaaatctcagcatgtggacatgttcaca
tatgtgggccatgaaaaaaagcaagaaaaggggggaggcgtttttatgca
tgtcctcatgttgtaagcaagtgtgtggagactagtattggacacgtaat
atcttccttatatttttgagccaaggttgcctcactgaaaccagaacctc
accgaacaccagcttggaccagctgaccagaagagctcccttggatgctt
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_99849387_99850370
seq2: B6Ng01-253E09.b_48_1034 (reverse)

seq1  AAAACAAAAA-CCAAAAAAGCTTAAGAAGAAGCTTGCTCCAAGTCCCCTG  49
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACCCAAAAAAGCTTAAGAAGAAGCTTGCTCCAAGTCCCCTG  50

seq1  -AATTCCTAATAGCACCTGTAAATATTTCATAGCGGCTCGATGATAGAAA  98
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTAATAGCACCTGTAAATATTTCATAGCGGCTCGATGATAGAAA  100

seq1  GCAGTGAGCTGGTGCAGACCCACAGCTATTCAGTGCTCACAACTGTGTTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAGCTGGTGCAGACCCACAGCTATTCAGTGCTCACAACTGTGTTT  150

seq1  CTGAAAAGTTAAGTCATTTCAACACATATTTATAACTCAGTTCAATGCTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGTTAAGTCATTTCAACACATATTTATAACTCAGTTCAATGCTT  200

seq1  CTCCCTAAGACCAGCGGAAGACAGCAACAGAGGACCTCACTGTTCACTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAAGACCAGCGGAAGACAGCAACAGAGGACCTCACTGTTCACTGT  250

seq1  AAGCACACAGT-CCTGGGGAGGAGGCCTCTACAATCCAGTCCCACCACTC  297
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACAGTCCCTGGGGAGGAGGCCTCTACAATCCAGTCCCACCACTC  300

seq1  ACAACCTTCCCCACATCGTCGTCATCGTGATTGCTTGTGTTCACACCATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTTCCCCACATCGTCGTCATCGTGATTGCTTGTGTTCACACCATG  350

seq1  GAAAGAACACTGTACCAGAGCTTAGTGCCAGGGGACTTTCTGCAAAGTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACACTGTACCAGAGCTTAGTGCCAGGGGACTTTCTGCAAAGTCC  400

seq1  TGCAGATTCCAACTGCTAGCATAAGGCTCAGATGTACAAAAGGGAGAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATTCCAACTGCTAGCATAAGGCTCAGATGTACAAAAGGGAGAAAT  450

seq1  AAGAGGACCCTACACAGCCACAATTTCCAGTACTATCTGTTGGTATATCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACCCTACACAGCCACAATTTCCAGTACTATCTGTTGGTATATCA  500

seq1  GCCATCTCAGAGTCAAGAGAGATATGACGATGTTGATGCCTCTTTACTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCAGAGTCAAGAGAGATATGACGATGTTGATGCCTCTTTACTGA  550

seq1  GGCAATTGGGAACTATATTTAAAAAGTATTTTTTTTTTCTGAAAAAGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTGGGAACTATATTTAAAAAGTATTTTTTTTTTCTGAAAAAGAAA  600

seq1  ATGGTATGCTAGAAATACAGAGTGGGTACCTTGCTGCTTAGGATCTCCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATGCTAGAAATACAGAGTGGGTACCTTGCTGCTTAGGATCTCCTG  650

seq1  TCAGATTTGATTACTAAGTATTTTTAACCATGGGGACTTATAAAGATAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTGATTACTAAGTATTTTTAACCATGGGGACTTATAAAGATAGT  700

seq1  GGCCATCTTAAAATAACAAATAATAGTCTTTGTTTTTATTTTGTCTTTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCTTAAAATAACAAATAATAGTCTTTGTTTTTATTTTGTCTTTTC  750

seq1  AAAGAACTGAGATACAATAGTTTCTGTGGAGAGGGAGGCTAATAAAGCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTGAGATACAATAGTTTCTGTGGAGAGGGAGGCTAATAAAGCCA  800

seq1  ACTGCTTATTTAAATTATTATGGGACAAACAAAACCAGCTGTATACTATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTATTTAAATTATTATGGGACAAACAAAACCAGCTGTATACTATT  850

seq1  ACATGTAGAAGCTGTTGACATAAAACCAGTAATTTTTGTTTTGGGAAACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAGAAGCTGTTGACATAAAACCAGTAATTTTTGTTTTGGGAAACC  900

seq1  AAAGGTACCATTCACATTCTAGTGTTGAATGCTGTGATTTGATCCTGATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTACCATTCACATTCTAGTGTTGAATGCTGTGATTTGATCCTGATT  950

seq1  GGATAATATCATTTTATTGTGCAGGCAGAAAGAATTC  984
      |||||||||||||||||||||||||||||||||||||
seq2  GGATAATATCATTTTATTGTGCAGGCAGAAAGAATTC  987


seq1: chr1_99681038_99682077
seq2: B6Ng01-253E09.g_67_1117

seq1  GAATTCTGTTTTTCCTTAAGGTGCTTAGACTACCAAAGCTTAATTAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTTCCTTAAGGTGCTTAGACTACCAAAGCTTAATTAATAA  50

seq1  GCTTCTGTCTTTAAAATGAAGTTAGTAATACATCATAAAATTGTCTTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTCTTTAAAATGAAGTTAGTAATACATCATAAAATTGTCTTAGC  100

seq1  ATGTTATGACAAAAATGTAAGACAAAACTAATATGTGGATCAGACTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGACAAAAATGTAAGACAAAACTAATATGTGGATCAGACTCAGT  150

seq1  CTGTAGGACTTTACCCAAATGCATGTGTTTTATCTAAATGCCTGTGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGACTTTACCCAAATGCATGTGTTTTATCTAAATGCCTGTGGCCA  200

seq1  ATGGAAGACAAAATCTGGGTTTCTTGAAATTTTTTTAAGCCAGAGGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGACAAAATCTGGGTTTCTTGAAATTTTTTTAAGCCAGAGGGAAA  250

seq1  GTGTGAACTTTAAGCAGTCTGTTTTCTTTTCATATTTTTTAGATCAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAACTTTAAGCAGTCTGTTTTCTTTTCATATTTTTTAGATCAATGT  300

seq1  AGAACTATATAGATTATTTGGTGCAAAAGAGATTGTAATTTCTCGTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATATAGATTATTTGGTGCAAAAGAGATTGTAATTTCTCGTGCTT  350

seq1  CTGGAAGTGTTAATCCAGCTGAAAACACACCTAGCACCATCAAAACATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGTGTTAATCCAGCTGAAAACACACCTAGCACCATCAAAACATTC  400

seq1  CTCTCCAAACACTGTGCCGACCACCCCAACAGCTGGGATGAGCATCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAACACTGTGCCGACCACCCCAACAGCTGGGATGAGCATCTGCC  450

seq1  AGCCCTTTCCTTTGCCTTCAATGTCACTCACTTGGTAGGTGCCTTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTTCCTTTGCCTTCAATGTCACTCACTTGGTAGGTGCCTTTTTTA  500

seq1  TTATTCATTGCTCATTCTAAATTCCAGGGATATGAAAGGGTTTGGGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATTGCTCATTCTAAATTCCAGGGATATGAAAGGGTTTGGGGAGG  550

seq1  GTTGTTTTATTTAATTACAAATGTCCTGGTTTTCTTTAAAATAGGAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTATTTAATTACAAATGTCCTGGTTTTCTTTAAAATAGGAGCCT  600

seq1  AATAAAAACACACCGTATTTCCAAATGTTCAATCGGAATCCTTGCGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACACACCGTATTTCCAAATGTTCAATCGGAATCCTTGCGTGTT  650

seq1  GGAGTGTCCTCCTGAAGAGGGCAGTGAAGGTACAAGTGTGTTTGCCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTCCTCCTGAAGAGGGCAGTGAAGGTACAAGTGTGTTTGCCAGAA  700

seq1  TCGTAGCTGCGATTAGAGAGGCTGATGGCGTGGTGGAGAACAAGACACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGCTGCGATTAGAGAGGCTGATGGCGTGGTGGAGAACAAGACACCA  750

seq1  GCATCGAGCCAGGTGATTCTATCTACTAGGAAAGTTCCCTTTGTGGACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGAGCCAGGTGATTCTATCTACTAGGAAAGTTCCCTTTGTGGACCC  800

seq1  CTACCAAAGAGGAATTGTGTTTAAAATCTCAGCATGTGGACATGTTCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAAGAGGAATTGTGTTTAAAATCTCAGCATGTGGACATGTTCACA  850

seq1  TATGT-GGCCATGAAAAAAAGCAAGAAAA-GGGGGAGGCGTTTTTTATGC  898
      ||||| ||||||||||||||||||||||| |||||||||| |||||||||
seq2  TATGTGGGCCATGAAAAAAAGCAAGAAAAGGGGGGAGGCG-TTTTTATGC  899

seq1  ATGTCCTCATG-TGTAAGCAAGTGTGTGGAGACTAGTAATGGACACGTAA  947
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  ATGTCCTCATGTTGTAAGCAAGTGTGTGGAGACTAGTATTGGACACGTAA  949

seq1  TATCTTCCTTATA-TTTTGAGCCAAGGTTG-CTCACTGAAACCAG-AGCT  994
      ||||||||||||| |||||||||||||||| |||||||||||||| | ||
seq2  TATCTTCCTTATATTTTTGAGCCAAGGTTGCCTCACTGAAACCAGAACCT  999

seq1  CACCG-ACA-CAGC-TGGACCAGCTGACCAG-AGAG--CCCCTGGATGCT  1038
      ||||| ||| |||| |||||||||||||||| ||||  ||| ||||||||
seq2  CACCGAACACCAGCTTGGACCAGCTGACCAGAAGAGCTCCCTTGGATGCT  1049

seq1  TC  1040
      ||
seq2  TC  1051


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