BAC Information

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BAC

Clone NameB6Ng01-254A07
Chromosome1 (Build37)
Map Location 61,734,723 - 61,904,765
singlet/doubletdoublet
Overlap genePard3b
Upstream geneEif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254A07.bB6Ng01-254A07.g
ACCGA060595GA060596
length1,1641,179
definitionB6Ng01-254A07.b B6Ng01-254A07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,734,723 - 61,735,888)(61,903,606 - 61,904,765)
sequence
gaattctatcatttagccaagttaaactgtcattgtgggaggtcatttca
gttgtcatcaaggttgttatccttgcctcctgagtcaagtatatttgtat
aaagaaagttgtgcagataaaatgtgagcatctgtcctcctcctcttctt
cctcctcatcttccatcttgccctatgtcagtttaggaccctagtcacaa
tggaggttggaatactaaaggaagtgagagagagaatgcttgctcttgag
cttagctggagcctccagtgaagcaaaggagtgggattttgtctgttcat
ttagcaaacttttttctgtccccccctcccccttttgagtagctgattag
ttgcaggtgcgaggctagatgctgcaagtgagacatgcactcttctgtca
cgcagctagccgacagactgctgggcagaactacaatgatggaaaacaat
agagcactctaatgagtcttgtgataatttttttgatagagaatgaattt
aataaataattatactcagaattatgaaatcatgagataaactaatataa
tgccttgtgttattgtctaataaccatgattgcctcctatttttctttga
gaattctttttattttgaaaatattcaagcttacacaaatgtagtcagaa
tatcttatgagcccctttcctccacaaatctccatcactcagcttctgaa
tcattagctgtggtcagtgtggctttgcctttttttttaacctctgcttt
tctaatgattttgttgcctgttttctttttgtacattctgagcatcttgt
agtggacagacagggctttctgtgtgacagtggggctatattgagcattg
tttaattcttgtatttgtatatttatatctagttcatgagtacatgtatg
tttgtgcatgtgtgcattgtgtgtgtgtgtttaaagagactacaattcat
ctgaagctagaattacaggttgttgtgtgccagatattctgggttctggg
aaactaattcagatcttctttagactagaagtgctctttgactctaaccc
attctcttcagaaaataaatcctgagcattatttcagtagttctatccct
ttttatattgtacactgagagagaattgtattgagcctgactatgttttg
gatgttgaacagaa
gaattcttctgtttaccaaattggagaagtctttctaaattagattttta
acaccctttcaactttcattatcagatttcacaagggcataaattccaaa
gaacttttcattaaatgtaaaagatatagtctcatgttcctcctgaatcc
ataatcccatacacaacataaaaataaagtttagatacaataaggcacca
ccaaagattatgaacattataaaaactttaaaagcacccaagaacaaagg
gccagattttcagctctaaagggcagaagttatgtggaatagagaacaaa
gtaattaaaacgaagtttatattgtaattacgcatttcgattctatactc
aaaactagttttaaaaaaaccaaataggtattcagacagtgttatagaaa
taatgctttggccctggaaaaaaaaatctaaccactgacacaagctttat
gctccacaagagaagcaattctaaaacagtgagttagtaaatagttatca
gagtactggatgtactgcacaaaacttaccgaacttgaactacttgctgc
agatgggccagtgaatctgagtcgagcattcttcagttagaaagttatct
ttaaccatccaaatgaaaagccccataatctattccacttccataatctc
tagttcatcaaaactactcttctgaaaagcagggatgaagtgaggcttag
aagcacaaggaagcatgtatatgcagccccacctctctgggaaacaacag
aaggacaattacctggacagatcaaccctgaacaacacagcaagaccatg
tcataaatgaaaactaaataacctcagtcaaatcaaaataggcatggttt
agaaaattcattcccaaaacagtcatacttcttactactgccatgagctt
gttcttaggattggcagctcagtcatgagtctaaagaggagaccaataaa
ataatactgttggtggggaaactattactgaaggaaaaggaggactgatt
taaactagagcaattactatggaacatttttattccggccacaggggcaa
acagaatctttattgttgtggggacacagcaatcacaatatccgtcacaa
cttgtcctgtcacttgagagtgactcaggacaaaactgtttaattcctag
atagaggaagggccaaacatttactttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61734723_61735888
seq2: B6Ng01-254A07.b_47_1210

seq1  GAATTCTATCATTTAGCCAAGTTAAACTGTCATTGTGGGAGGTCATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCATTTAGCCAAGTTAAACTGTCATTGTGGGAGGTCATTTCA  50

seq1  GTTGTCATCAAGGTTGTTATCCTTGCCTCCTGAGTCAAGTATATTTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCATCAAGGTTGTTATCCTTGCCTCCTGAGTCAAGTATATTTGTAT  100

seq1  AAAGAAAGTTGTGCAGATAAAATGTGAGCATCTGTCCTCCTCCTCTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGTTGTGCAGATAAAATGTGAGCATCTGTCCTCCTCCTCTTCTT  150

seq1  CCTCCTCATCTTCCATCTTGCCCTATGTCAGTTTAGGACCCTAGTCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCATCTTCCATCTTGCCCTATGTCAGTTTAGGACCCTAGTCACAA  200

seq1  TGGAGGTTGGAATACTAAAGGAAGTGAGAGAGAGAATGCTTGCTCTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTTGGAATACTAAAGGAAGTGAGAGAGAGAATGCTTGCTCTTGAG  250

seq1  CTTAGCTGGAGCCTCCAGTGAAGCAAAGGAGTGGGATTTTGTCTGTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTGGAGCCTCCAGTGAAGCAAAGGAGTGGGATTTTGTCTGTTCAT  300

seq1  TTAGCAAACTTTTTTCTGTCCCCCCCTCCCCCTTTTGAGTAGCTGATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAACTTTTTTCTGTCCCCCCCTCCCCCTTTTGAGTAGCTGATTAG  350

seq1  TTGCAGGTGCGAGGCTAGATGCTGCAAGTGAGACATGCACTCTTCTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGTGCGAGGCTAGATGCTGCAAGTGAGACATGCACTCTTCTGTCA  400

seq1  CGCAGCTAGCCGACAGACTGCTGGGCAGAACTACAATGATGGAAAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCTAGCCGACAGACTGCTGGGCAGAACTACAATGATGGAAAACAAT  450

seq1  AGAGCACTCTAATGAGTCTTGTGATAATTTTTTTGATAGAGAATGAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTCTAATGAGTCTTGTGATAATTTTTTTGATAGAGAATGAATTT  500

seq1  AATAAATAATTATACTCAGAATTATGAAATCATGAGATAAACTAATATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAATTATACTCAGAATTATGAAATCATGAGATAAACTAATATAA  550

seq1  TGCCTTGTGTTATTGTCTAATAACCATGATTGCCTCCTATTTTTCTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTGTTATTGTCTAATAACCATGATTGCCTCCTATTTTTCTTTGA  600

seq1  GAATTCTTTTTATTTTGAAAATATTCAAGCTTACACAAATGTAGTCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTATTTTGAAAATATTCAAGCTTACACAAATGTAGTCAGAA  650

seq1  TATCTTATGAGCCCCTTTCCTCCACAAATCTCCATCACTCAGCTTCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTATGAGCCCCTTTCCTCCACAAATCTCCATCACTCAGCTTCTGAA  700

seq1  TCATTAGCTGTGGTCAGTGTGGCTTTGCCTTTTTTTTTAACCTCTGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGCTGTGGTCAGTGTGGCTTTGCCTTTTTTTTTAACCTCTGCTTT  750

seq1  TCTAATGATTTTGTTGCCTGTTTTCTTTTTGTACATTCTGAGCATCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGATTTTGTTGCCTGTTTTCTTTTTGTACATTCTGAGCATCTTGT  800

seq1  AGTGGACAGACAGGGCTTTCTGTGTGACAGTGGGGCTATATTGAGCATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACAGACAGGGCTTTCTGTGTGACAGTGGGGCTATATTGAGCATTG  850

seq1  TTTAATTCTTGTATTTGTATATTTATATCTAGTTCATGAGTACATGTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCTTGTATTTGTATATTTATATCTAGTTCATGAGTACATGTATG  900

seq1  TTTGTGCATGTGTGCATTGTGTGTGTGTGTTTAAAGAGACTACAATTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCATGTGTGCATTGTGTGTGTGTGTTTAAAGAGACTACAATTCAT  950

seq1  CTGAAGCTAGAATTACAGGTTGTTGTGTGCCAGATATTCTGGGTTCTGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTAGAATTACAGGTTGTTGTGTGCCAGATATTCTGGGTTCTGGG  1000

seq1  AAACTAATTCAGATCTTCTTTAAGACTAGAAGTGCTC-TTGACTCCTAAC  1049
      ||||||||||||||||||||| ||||||||||||||| |||||| |||||
seq2  AAACTAATTCAGATCTTCTTT-AGACTAGAAGTGCTCTTTGACT-CTAAC  1048

seq1  CCA-TCTCTTCAGAAAAT-AATCCTGAGCATTATTTTCCAAGTAATTTCT  1097
      ||| |||||||||||||| |||||||||||||||||    ||| | ||||
seq2  CCATTCTCTTCAGAAAATAAATCCTGAGCATTATTT---CAGT-AGTTCT  1094

seq1  AT-CCTTTTTAT-TTGGACAACCTGAGAGAGAA-TGTA-TGAAGCTGACT  1143
      || ||||||||| ||| |||  ||||||||||| |||| |||  ||||||
seq2  ATCCCTTTTTATATTGTACA--CTGAGAGAGAATTGTATTGAGCCTGACT  1142

seq1  ATGTTTTGAATTGTTGAACAGAA  1166
      |||||||| | ||||||||||||
seq2  ATGTTTTGGA-TGTTGAACAGAA  1164

seq1: chr1_61903606_61904765
seq2: B6Ng01-254A07.g_72_1250 (reverse)

seq1  TAAAAGAAAATGTTT-GCCCTTCCTCTA-CTA-GAATTAAACAG--TTGT  45
      |||||| |||||||| |||||||||||| ||| |||||||||||  ||||
seq2  TAAAAGTAAATGTTTGGCCCTTCCTCTATCTAGGAATTAAACAGTTTTGT  50

seq1  CTGTAGTCA--CTCAAGTG-CAGGAC-AGTTGTG-CTGATA-TGTGATTG  89
      |   |||||  |||||||| |||||| ||||||| | |||| ||||||||
seq2  CCTGAGTCACTCTCAAGTGACAGGACAAGTTGTGACGGATATTGTGATTG  100

seq1  CTGTGT-CCCACAACAAT-AAGA-TCTGTTTG-CCCTGTGGACAGAAT-A  134
      |||||| ||||||||||| |||| |||||||| |||||||| | |||| |
seq2  CTGTGTCCCCACAACAATAAAGATTCTGTTTGCCCCTGTGGCCGGAATAA  150

seq1  AAATGTT-CATAGTAATTTGCTCTAGTTTTAAATTCAGTCCTCCTTTTCC  183
      ||||||| |||||||| ||||||||||||  || ||||||||||||||||
seq2  AAATGTTCCATAGTAA-TTGCTCTAGTTT--AAATCAGTCCTCCTTTTCC  197

seq1  -TCAGT-ATAGTTT-CCCACCAACAGTATTATTTTATTGGTCTCCTCTTT  230
       ||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCAGTAATAGTTTCCCCACCAACAGTATTATTTTATTGGTCTCCTCTTT  247

seq1  AGACTCATGACTGAGCTGCCAATCCTAAGAACAAGCTCATGGCAGTAGTA  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCATGACTGAGCTGCCAATCCTAAGAACAAGCTCATGGCAGTAGTA  297

seq1  AGAAGTATTGACTGTTTTGTGAATGAA-TTTCTAAACCATGCCTATTTTG  329
      ||||||| ||||||||||| ||||||| ||||||||||||||||||||||
seq2  AGAAGTA-TGACTGTTTTGGGAATGAATTTTCTAAACCATGCCTATTTTG  346

seq1  ATTTGACTG-GGTTATTTAGTTTTCATTTATGACATGGTCTTGCTGTGTT  378
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTGAGGTTATTTAGTTTTCATTTATGACATGGTCTTGCTGTGTT  396

seq1  GTTCA-GGTTGATCTGTCCAGGTAATTGTCCTTCTGTTGTTTCCCAGAGA  427
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGGTTGATCTGTCCAGGTAATTGTCCTTCTGTTGTTTCCCAGAGA  446

seq1  GGTGGGGCTGCATATACATGCTTCCTTGTGCTTCTAAGCCTCACTTCATC  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGCTGCATATACATGCTTCCTTGTGCTTCTAAGCCTCACTTCATC  496

seq1  CCTGCTTTTCAGAAGAGTAGTTTTGATGAACTAGAGATTATGGAAGTGGA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTTCAGAAGAGTAGTTTTGATGAACTAGAGATTATGGAAGTGGA  546

seq1  ATAGATTATGGGGCTTTTCATTTGGATGGTTAAAGATAACTTTCTAACTG  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTATGGGGCTTTTCATTTGGATGGTTAAAGATAACTTTCTAACTG  596

seq1  AAGAATGCTCGACTCAGATTCACTGGCCCATCTGCAGCAAGTAGTTCAAG  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCTCGACTCAGATTCACTGGCCCATCTGCAGCAAGTAGTTCAAG  646

seq1  TTCGGTAAGTTTTGTGCAGTACATCCAGTACTCTGATAACTATTTACTAA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTAAGTTTTGTGCAGTACATCCAGTACTCTGATAACTATTTACTAA  696

seq1  CTCACTGTTTTAGAATTGCTTCTCTTGTGGAGCATAAAGCTTGTGTCAGT  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTTTTAGAATTGCTTCTCTTGTGGAGCATAAAGCTTGTGTCAGT  746

seq1  GGTTAGATTTTTTTTTCCAGGGCCAAAGCATTATTTCTATAACACTGTCT  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGATTTTTTTTTCCAGGGCCAAAGCATTATTTCTATAACACTGTCT  796

seq1  GAATACCTATTTGGTTTTTTTAAAACTAGTTTTGAGTATAGAATCGAAAT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCTATTTGGTTTTTTTAAAACTAGTTTTGAGTATAGAATCGAAAT  846

seq1  GCGTAATTACAATATAAACTTCGTTTTAATTACTTTGTTCTCTATTCCAC  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAATTACAATATAAACTTCGTTTTAATTACTTTGTTCTCTATTCCAC  896

seq1  ATAACTTCTGCCCTTTAGAGCTGAAAATCTGGCCCTTTGTTCTTGGGTGC  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTCTGCCCTTTAGAGCTGAAAATCTGGCCCTTTGTTCTTGGGTGC  946

seq1  TTTTAAAGTTTTTATAATGTTCATAATCTTTGGTGGTGCCTTATTGTATC  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGTTTTTATAATGTTCATAATCTTTGGTGGTGCCTTATTGTATC  996

seq1  TAAACTTTATTTTTATGTTGTGTATGGGATTATGGATTCAGGAGGAACAT  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTATTTTTATGTTGTGTATGGGATTATGGATTCAGGAGGAACAT  1046

seq1  GAGACTATATCTTTTACATTTAATGAAAAGTTCTTTGGAATTTATGCCCT  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTATATCTTTTACATTTAATGAAAAGTTCTTTGGAATTTATGCCCT  1096

seq1  TGTGAAATCTGATAATGAAAGTTGAAAGGGTGTTAAAAATCTAATTTAGA  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATCTGATAATGAAAGTTGAAAGGGTGTTAAAAATCTAATTTAGA  1146

seq1  AAGACTTCTCCAATTTGGTAAACAGAAGAATTC  1160
      |||||||||||||||||||||||||||||||||
seq2  AAGACTTCTCCAATTTGGTAAACAGAAGAATTC  1179