BAC Information

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BAC

Clone NameB6Ng01-254D23
Chromosome1 (Build37)
Map Location 6,718,333 - 6,719,479
singlet/doubletsinglet
Overlap genenone
Upstream geneNpbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
Downstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254D23.bB6Ng01-254D23.g
ACCGA060764GA060765
length1,1371,174
definitionB6Ng01-254D23.b B6Ng01-254D23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttaaagtaaagctgatgtttgctgtacattcccagcataggga
gctttgcattggaaaggtacttctcctaacatgccctcaccgtggactgc
tgacttcaaatagctagtgcaatgagattgtgcactaggcaactgtgtca
agtaccaaatgtattgcagaataccaatgaattgatactaaacaacattt
tagaaaaaagatgaatctcagagcacctgcctataccaaaattggaaatg
taattactttaaaagttagattgtcaagtatttctctaggtgatgtagac
atatctctatgtgatatgtgactagtttttgtgaccagcattttttttct
ttctttctttttctaaaacagaattgtgaattttaacattacaactgtgg
gcagcagatgtgctcagggaagagtggactcccagggaaggggacccagg
actgtgtctgaggttagccaagttagaagatgtaaagtttgagttctttt
tttacttctttcagctaccctcctccagggcagtccaggttctttattaa
tgtctgtttttaaattagcaggagaatctagttttcctgtcctaggtact
tctatagtgcctttttaaaaaagcaatgagaaaagtaaactatagcttcg
aaagttttgatatatgcttcagccctataagaaggaaggtggtttactag
tcaatatgaaatgttgtaagtaacgtttttttttttaagtttccagaata
atattcagagctcatctatctcctttaaccctgtgtgttctagaactgcc
cccagtgggcctggcagtctgttagttgttgccttaaattgcacgtgggc
ttgttgcaaattttgaaaaattgattaatttttttctgagatttacattt
tttagtgcagttaggaatgggaaaaatctatgggaatattcccttgtagt
ctgtataaaagtacccttgtgggagaaagagagccctatgagaaaggcac
acctgctgcgtgagagatgtgtatgtctgtcaatcctgacagcagtcatg
ggaaacagctctgtgcttgacccagagactatttctgtgtgcactcacag
gaagctagcttccacccaaagtggtggctgcttgtca

gaattccagaactttttcagacttttaacatgaacggatgctgaattttg
tcaattgccttttcaacatctgatgaaatgatcatgtagttttttgttgt
tgttgttgagtttgtttatgtagtggatcatgtgaatggatttccatata
ttgaaccatccctgtatccctgggatgaagcctaattgatcatgatggat
gatcgttttgatatgttcttggattcagttggcaagaattttattttgta
tttttgtatcaatgttcagaagggagattattctgaagttctctttcttt
ggtctttgtctggtttaggtataagcataattgaggcttcatagaatgaa
ttgggtagtataccttctgtttctattttgtgtaatagtttgaagagtat
tggtattatgtcttctttaaaggtatgatagaattctcactaacccatct
ggtcctgggatttttggttgggagactattaatgactgcttctatttctt
tagggattatgggacagtttagacagtttatctcatcctgttttaacgtt
ggcaccttgtatttgtctagaaaattgtccatttcatccagattttaaaa
tttacttgagtataaacgttcatagtagcatatgataatttttgaatttc
catggtttccattgttatgtcttcctttacatttctgattttattaattt
ggatactatttctgtgccctctcattagtctggctaagggtatatctatc
ttgttgattttctcaaagaaccagctttgtatagttcttttactggattt
tactggatttactggatgttttgggtttaggagatttttgctttttgcat
tttttgacctattgtgttaatgcttttataaggtatcatttgcccctgag
aatctctcctcctgtcttttgtattctgttggtgatgcttgcatctatga
ctccctgatctttttctagggtttcaaagtccaagattggcctcctttga
gatttcaatattggttcctaattccatttttagattctgggaaggaattc
cttcatttccctcaccctgaatttccattatttcttttagggaatttttg
tggttcctctctttaaggcttcctagctctcttatacccccgggtctcta
tatattcttttgagggagagtcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_6718333_6719479
seq2: B6Ng01-254D23.b_52_1188

seq1  GAATTCCTTAAAGTAAAGCTGATGTTTGCTGTACATTCCCAGCATAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAAGTAAAGCTGATGTTTGCTGTACATTCCCAGCATAGGGA  50

seq1  GCTTTGCATTGGAAAGGTACTTCTCCTAACATGCCCTCACCGTGGACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCATTGGAAAGGTACTTCTCCTAACATGCCCTCACCGTGGACTGC  100

seq1  TGACTTCAAATAGCTAGTGCAATGAGATTGTGCACTAGGCAACTGTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCAAATAGCTAGTGCAATGAGATTGTGCACTAGGCAACTGTGTCA  150

seq1  AGTACCAAATGTATTGCAGAATACCAATGAATTGATACTAAACAACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCAAATGTATTGCAGAATACCAATGAATTGATACTAAACAACATTT  200

seq1  TAGAAAAAAGATGAATCTCAGAGCACCTGCCTATACCAAAATTGGAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAAGATGAATCTCAGAGCACCTGCCTATACCAAAATTGGAAATG  250

seq1  TAATTACTTTAAAAGTTAGATTGTCAAGTATTTCTCTAGGTGATGTAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTTTAAAAGTTAGATTGTCAAGTATTTCTCTAGGTGATGTAGAC  300

seq1  ATATCTCTATGTGATATGTGACTAGTTTTTGTGACCAGCATTTTTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTATGTGATATGTGACTAGTTTTTGTGACCAGCATTTTTTTTCT  350

seq1  TTCTTTCTTTTTCTAAAACAGAATTGTGAATTTTAACATTACAACTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTTTCTAAAACAGAATTGTGAATTTTAACATTACAACTGTGG  400

seq1  GCAGCAGATGTGCTCAGGGAAGAGTGGACTCCCAGGGAAGGGGACCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGATGTGCTCAGGGAAGAGTGGACTCCCAGGGAAGGGGACCCAGG  450

seq1  ACTGTGTCTGAGGTTAGCCAAGTTAGAAGATGTAAAGTTTGAGTTCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCTGAGGTTAGCCAAGTTAGAAGATGTAAAGTTTGAGTTCTTTT  500

seq1  TTTACTTCTTTCAGCTACCCTCCTCCAGGGCAGTCCAGGTTCTTTATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCTTTCAGCTACCCTCCTCCAGGGCAGTCCAGGTTCTTTATTAA  550

seq1  TGTCTGTTTTTAAATTAGCAGGAGAATCTAGTTTTCCTGTCCTAGGTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTTTTAAATTAGCAGGAGAATCTAGTTTTCCTGTCCTAGGTACT  600

seq1  TCTATAGTGCCTTTTTAAAAAAGCAATGAGAAAAGTAAACTATAGCTTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGTGCCTTTTTAAAAAAGCAATGAGAAAAGTAAACTATAGCTTCG  650

seq1  AAAGTTTTGATATATGCTTCAGCCCTATAAGAAGGAAGGTGGTTTACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTGATATATGCTTCAGCCCTATAAGAAGGAAGGTGGTTTACTAG  700

seq1  TCAATATGAAATGTTGTAAGTAACGTTTTTTTTTTTAAGTTTCCAGAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGAAATGTTGTAAGTAACGTTTTTTTTTTTAAGTTTCCAGAATA  750

seq1  ATATTCAGAGCTCATCTATCTCCTTTAACCCTGTGTGTTCTAGAACTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGAGCTCATCTATCTCCTTTAACCCTGTGTGTTCTAGAACTGCC  800

seq1  CCCAGTGGGCCTGGCAGTCTGTTAGTTGTTGCCTTAAATTGCACGTGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGGGCCTGGCAGTCTGTTAGTTGTTGCCTTAAATTGCACGTGGGC  850

seq1  TTGTTGCAAATTTTGAAAAATTGATTAATTTTTTTCTGAGATTTACATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCAAATTTTGAAAAATTGATTAATTTTTTTCTGAGATTTACATTT  900

seq1  TTTAGTGCAGTTAGGAAT-GGAAAAATCTAT-GGAATATTCCCTTGTAGT  948
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  TTTAGTGCAGTTAGGAATGGGAAAAATCTATGGGAATATTCCCTTGTAGT  950

seq1  CTGTAATAAAAGTACCCTTGTGGGAGAAAAGAGAGCCCTAATGAGAAAGG  998
      |||| ||||||||||||||||||||| |||||||||||| ||||||||||
seq2  CTGT-ATAAAAGTACCCTTGTGGGAG-AAAGAGAGCCCT-ATGAGAAAGG  997

seq1  CACAACCTGCTGCGTGAGAGATGTGTATGTTCCTGTCCAATCCTGACAGC  1048
      ||| ||||||||||||||||||||||||||  |||| |||||||||||| 
seq2  CAC-ACCTGCTGCGTGAGAGATGTGTATGT--CTGT-CAATCCTGACAG-  1042

seq1  CAGTCAT-GGAAACAGGCTCTGTGCCTGAACCCAGAGACTA-TTCTGTGT  1096
      ||||||| ||||||| ||||||||| || |||||||||||| ||||||||
seq2  CAGTCATGGGAAACA-GCTCTGTGCTTG-ACCCAGAGACTATTTCTGTGT  1090

seq1  GCCACTCACAAGGAAGCTAAGCTCCACCCCAAAGT-GTGGCTGCCTTTGT  1145
      | ||||||| |||||||| |||| |  |||||||| ||||||||  ||||
seq2  G-CACTCAC-AGGAAGCT-AGCTTCCACCCAAAGTGGTGGCTGC--TTGT  1135

seq1  CA  1147
      ||
seq2  CA  1137


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