BAC Information

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BAC

Clone NameB6Ng01-254E24
Chromosome1 (Build37)
Map Location 106,689,391 - 106,690,249
singlet/doubletsinglet
Overlap geneCdh20
Upstream geneLOC383546, LOC100041134
Downstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254E24.bB6Ng01-254E24.g
ACCGA060810GA060811
length8621,207
definitionB6Ng01-254E24.b B6Ng01-254E24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttttatgctcctctcaacaccggtgctgttcagattgaaatta
gcatcttttacaatgaaataccagttgctgtcacaaactgacatgacagc
tggaaaaagaggcctgtttatcttgttcttcatgtctttggttcattatg
gtttattaagatgtgtactgtaagttcctgaatgaagagacattgagatt
ttgcatagtgattatcatttgaatagagttcttgtaaagacttttttctc
caaggagggtgggaagcaatgaaggtcagagatcaaaaccactcatatta
agaggctcctagaaaccttcaattattctcttaaaatatgtcttataagg
tgggttttctaactatgtctaccatatatatatatatatatacatatata
tatatatatatatatatatatatatatgcatttacaagagacaataatga
ctccatatgaactatctatgcacttacagccttctgcatgttatctcatg
acatgatgcttagacattagtcctgtgacatgagaggtaattctgtatta
aagcaagagttcaagacacttgtgcagagtcacatggcttgcccaaggac
tcatatgttccaaatgtgctgttttctctacctcatgtactacctaaaaa
gatggatttttagaagttcaattttttttcagttatttcatgggggtggg
gtggatgaagtatagagtcaaaatcttaattttccaataacatttgtaac
ccaacactttattgtgtacatactgtatgtgtgggggaaggcagaaaaat
gcttatatagatgataaagtgtctttcctttgggttcaaacatgatattt
tacttttcaaat

gaattctttgtttaactctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttttatatatatattagatattattcccc
tatcagatttatgatagctaaagatcctttcccaatctattggtggcctt
tttgtcttattgacattatcttttgccttacagaagctttgcaattttat
gaggtcccatttgtctattctcgatcttacaacacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatcttccaggtttttccccact
ttctcctctttaagtttcggtgtctctggttttatgtggagttccttaat
ccacttagatttgaccttagaacaaggagataggaatggatcaattcaca
ttcttctgcatgataactgccagttgtgacagcaccatttgttgaaaatg
ttctcttttttccgctggatggttttagctcccttgtcaaagatcaaggg
accataggtgtgtgggttcatttcagggtcttcaattctattccattgat
ctacttttctgtcactatgccagtaccatgaagtttgtttttttttttaa
tcaaaattgctctgtagtagagctttatgtcaggcatgatgattccacca
gaggttcttttatccttgagaagagtttttgctatcctaggttttttgtc
atgccagatgaatttggatgttgccctttccaattcgttgaagaattgag
ttggaattttggtggggattgcattgaatctgtagattgcttttggaaag
atagccagttttactatactgatcctgccaatccatgagcatgggagatc
ttttccatcttctgagatatccttttaatttctttcttcagagacttgga
ggttcttatcatacagatctttcacttccttagttagagttgagcccagg
gtattttcctattatttggtgactaattgagaagggtgttgtttccctta
atttcctttctcagcctgttatcctttgtgtacagaaaggcaattgactt
gttttagttatttttaatccagaataccttatatggaacctgtttatcag
ggtttaggcagttcctcaggtggaaatttggagctacttatatacatcct
atactttcgacaaaatcgatactttgaaccctgtgctcgctcagaaagtt
aggatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_106689391_106690249
seq2: B6Ng01-254E24.b_44_905 (reverse)

seq1  ATTTGAAAAGTAAAATTAACAATGCTAGAA-CCAAAGGAAAGACACTTTA  49
      ||||||||||||||||  |  ||| | ||| |||||||||||||||||||
seq2  ATTTGAAAAGTAAAAT--ATCATGTTTGAACCCAAAGGAAAGACACTTTA  48

seq1  TCATCTATAAAAGCA-TTTTCTGCCTTCCCCAACACATACAGTATGTACA  98
      ||||||||| ||||| ||||||||||||||| ||||||||||||||||||
seq2  TCATCTATATAAGCATTTTTCTGCCTTCCCCCACACATACAGTATGTACA  98

seq1  CAAT-AAGTGTT-GGTTACAAATGTTATTGGAAAA-TAAGATTTTGACTC  145
      |||| ||||||| |||||||||||||||||||||| ||||||||||||||
seq2  CAATAAAGTGTTGGGTTACAAATGTTATTGGAAAATTAAGATTTTGACTC  148

seq1  TATACTTCATCCACCCCACCCCCATGAAATAACTGAAAAAAAATTGAACT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTCATCCACCCCACCCCCATGAAATAACTGAAAAAAAATTGAACT  198

seq1  TCTAAAAATCCATCTTTTTAGGTAGTACATGAGGTAGAGAAAACAGCACA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAATCCATCTTTTTAGGTAGTACATGAGGTAGAGAAAACAGCACA  248

seq1  TTTGGAACATATGAGTCCTTGGGCAAGCCATGTGACTCTGCACAAGTGTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAACATATGAGTCCTTGGGCAAGCCATGTGACTCTGCACAAGTGTC  298

seq1  TTGAACTCTTGCTTTAATACAGAATTACCTCTCATGTCACAGGACTAATG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCTTGCTTTAATACAGAATTACCTCTCATGTCACAGGACTAATG  348

seq1  TCTAAGCATCATGTCATGAGATAACATGCAGAAGGCTGTAAGTGCATAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCATCATGTCATGAGATAACATGCAGAAGGCTGTAAGTGCATAGA  398

seq1  TAGTTCATATGGAGTCATTATTGTCTCTTGTAAATGCATATATATATATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCATATGGAGTCATTATTGTCTCTTGTAAATGCATATATATATATA  448

seq1  TATATATATATATATATATATGTATATATATATATATATATGGTAGACAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATGTATATATATATATATATATGGTAGACAT  498

seq1  AGTTAGAAAACCCACCTTATAAGACATATTTTAAGAGAATAATTGAAGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAAACCCACCTTATAAGACATATTTTAAGAGAATAATTGAAGGT  548

seq1  TTCTAGGAGCCTCTTAATATGAGTGGTTTTGATCTCTGACCTTCATTGCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAGCCTCTTAATATGAGTGGTTTTGATCTCTGACCTTCATTGCT  598

seq1  TCCCACCCTCCTTGGAGAAAAAAGTCTTTACAAGAACTCTATTCAAATGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCCTCCTTGGAGAAAAAAGTCTTTACAAGAACTCTATTCAAATGA  648

seq1  TAATCACTATGCAAAATCTCAATGTCTCTTCATTCAGGAACTTACAGTAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACTATGCAAAATCTCAATGTCTCTTCATTCAGGAACTTACAGTAC  698

seq1  ACATCTTAATAAACCATAATGAACCAAAGACATGAAGAACAAGATAAACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTAATAAACCATAATGAACCAAAGACATGAAGAACAAGATAAACA  748

seq1  GGCCTCTTTTTCCAGCTGTCATGTCAGTTTGTGACAGCAACTGGTATTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTTTTTCCAGCTGTCATGTCAGTTTGTGACAGCAACTGGTATTTC  798

seq1  ATTGTAAAAGATGCTAATTTCAATCTGAACAGCACCGGTGTTGAGAGGAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAAAGATGCTAATTTCAATCTGAACAGCACCGGTGTTGAGAGGAG  848

seq1  CATAAAAAGAATTC  859
      ||||||||||||||
seq2  CATAAAAAGAATTC  862


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