BAC Information

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BAC

Clone NameB6Ng01-254K01
Chromosome1 (Build37)
Map Location 72,275,414 - 72,452,841
singlet/doubletdoublet
Overlap genePecr, Tmem169, Xrcc5
Upstream geneAbca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg
Downstream geneMarch4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254K01.bB6Ng01-254K01.g
ACCGA061046GA061047
length1,107230
definitionB6Ng01-254K01.b B6Ng01-254K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,451,794 - 72,452,841)(72,275,414 - 72,275,643)
sequence
gaattcttcttcgtgtaaatgaagtattcccagcaccttatcccaagcca
ataatgtaacccactctagaaatcgctactcatttccctaagatctctac
agcccttgttcaccccaataaggttgagctctctcactgaagctgatctc
tcactgaagctgaagtcagtctatcagtactcacggctgtcagaaccctg
cccctaccccctacctccctacccccactcccccacactccctgctccat
tcccctcaccctggaagacttctggttaacaactcacaaggaaggggaga
tccatactcaggaggcggtagcaggtgatctctaagtttgaggccagcct
ggtctacatagtgagttgcaggatggccagctctgcacagagaaactctg
tctcaagaaaaaaaaaaacataacaaaaacaaaaacaaaaagccctcaca
aacaaacaacagagcctcccctcttctgaacttcgggctcaggcatgggg
aacgattactttttcctctgtatttttcagggttcttcacagaagcagac
aagtgagacagatgttctttgtgatggggtaggtcctgtaaagtgcatca
ccagtagacagtgccctaagctgacaatacactgagtcattaacggcttg
gataactgtctcccaaaggccttggtcaccagcctgtggcactgtctgaa
gattctagaactcgaagcagtgggagaaaacgaggtcactgggagtatgt
ccttgaaggggtggagcccagcccatttccctttttgctttctggccacc
aaggagagagatgtttcttttactacatataatggtatacttgctgcatc
ataggccccaaagcaatgggccaaccaactgaaacttccaaaagtgtaaa
ccaaaataaatgctttctccttgtaagctggcttcctcagctgtgttgtt
aacagtaatgcaaaactgactagaaaacttatccagcatcataccttatc
actggtacagtatcagtgtctgattcggcaatgtccattctgtctaggag
ctgtggcttacttgcaatggtccagaataaggaaggaattttcatggttg
gttacat
gaaccactaaggaaagacacacccccacacccaaccccccggccccaaac
aaaacatctttcaatttaaaagatttaaaaaaaaaaattttttttttttt
ttaaattttcagcagtgccgcagcatcagcctcctttccaatctgagagc
tgctgcagacagggaagacagggactgaagtttttcaaggcaaaaatcac
aattgtgtcaactctgggggggtggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_72451794_72452841
seq2: B6Ng01-254K01.b_101_1153 (reverse)

seq1  ATGT-ACCAA-CATG-ATATTCCTTCTTTATTCTGGACCATGGC-AGTAA  46
      |||| ||||| |||| | |||||||| |||||||||||||| || |||||
seq2  ATGTAACCAACCATGAAAATTCCTTCCTTATTCTGGACCATTGCAAGTAA  50

seq1  GCCACAGCTCCTAGACAGAAT-GACATTGCCGAATCAGACAACTGATACT  95
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  GCCACAGCTCCTAGACAGAATGGACATTGCCGAATCAGAC-ACTGATACT  99

seq1  GTACAGTTGATAAGGTATGATGCTTGATAAGTTTTCTAGTCAGTTTTGCA  145
      ||||   ||||||||||||||||| |||||||||||||||||||||||||
seq2  GTACCAGTGATAAGGTATGATGCTGGATAAGTTTTCTAGTCAGTTTTGCA  149

seq1  TTACTG-TAACAACACAGCTGAGGAAGCCAGCTTACAAGGAGAAAGCATT  194
      |||||| ||||||||||||||||||||||||||||||||||||||||| |
seq2  TTACTGTTAACAACACAGCTGAGGAAGCCAGCTTACAAGGAGAAAGCA-T  198

seq1  TTATTTTGGTTTACACTTTTGGAAGTTTCAGTTGGTTGGCCCATTGCTTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGGTTTACACTTTTGGAAGTTTCAGTTGGTTGGCCCATTGCTTT  248

seq1  GGGGCCTATGATGCAGC-AGTATACCATTATATGTAGTAAAAGAAACATC  293
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGGGCCTATGATGCAGCAAGTATACCATTATATGTAGTAAAAGAAACATC  298

seq1  TCTCTCCTTGGTGGCCAGAAAGCAAAAAGGGAAATGGGCTGGGCTCCACC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTTGGTGGCCAGAAAGCAAAAAGGGAAATGGGCTGGGCTCCACC  348

seq1  CCTTCAAGGACATACTCCCAGTGACCTCGTTTTCTCCCACTGCTTCGAGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAGGACATACTCCCAGTGACCTCGTTTTCTCCCACTGCTTCGAGT  398

seq1  TCTAGAATCTTCAGACAGTGCCACAGGCTGGTGACCAAGGCCTTTGGGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATCTTCAGACAGTGCCACAGGCTGGTGACCAAGGCCTTTGGGAG  448

seq1  ACAGTTATCCAAGCCGTTAATGACTCAGTGTATTGTCAGCTTAGGGCACT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTATCCAAGCCGTTAATGACTCAGTGTATTGTCAGCTTAGGGCACT  498

seq1  GTCTACTGGTGATGCACTTTACAGGACCTACCCCATCACAAAGAACATCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTGGTGATGCACTTTACAGGACCTACCCCATCACAAAGAACATCT  548

seq1  GTCTCACTTGTCTGCTTCTGTGAAGAACCCTGAAAAATACAGAGGAAAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACTTGTCTGCTTCTGTGAAGAACCCTGAAAAATACAGAGGAAAAA  598

seq1  GTAATCGTTCCCCATGCCTGAGCCCGAAGTTCAGAAGAGGGGAGGCTCTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCGTTCCCCATGCCTGAGCCCGAAGTTCAGAAGAGGGGAGGCTCTG  648

seq1  TTGTTTGTTTGTGAGGGCTTTTTGTTTTTGTTTTTGTTATGTTTTTTTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTGAGGGCTTTTTGTTTTTGTTTTTGTTATGTTTTTTTTT  698

seq1  TTCTTGAGACAGAGTTTCTCTGTGCAGAGCTGGCCATCCTGCAACTCACT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGACAGAGTTTCTCTGTGCAGAGCTGGCCATCCTGCAACTCACT  748

seq1  ATGTAGACCAGGCTGGCCTCAAACTTAGAGATCACCTGCTACCGCCTCCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACCAGGCTGGCCTCAAACTTAGAGATCACCTGCTACCGCCTCCT  798

seq1  GAGTATGGATCTCCCCTTCCTTGTGAGTTGTTAACCAGAAGTCTTCCAGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGGATCTCCCCTTCCTTGTGAGTTGTTAACCAGAAGTCTTCCAGG  848

seq1  GTGAGGGGAATGGAGCAGGGAGTGTGGGGGAGTGGGGGTAGGGAGGTAGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGAATGGAGCAGGGAGTGTGGGGGAGTGGGGGTAGGGAGGTAGG  898

seq1  GGGTAGGGGCAGGGTTCTGACAGCCGTGAGTACTGATAGACTGACTTCAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGGGCAGGGTTCTGACAGCCGTGAGTACTGATAGACTGACTTCAG  948

seq1  CTTCAGTGAGAGATCAGCTTCAGTGAGAGAGCTCAACCTTATTGGGGTGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTGAGAGATCAGCTTCAGTGAGAGAGCTCAACCTTATTGGGGTGA  998

seq1  ACAAGGGCTGTAGAGATCTTAGGGAAATGAGTAGCGATTTCTAGAGTGGG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGCTGTAGAGATCTTAGGGAAATGAGTAGCGATTTCTAGAGTGGG  1048

seq1  TTACA  1048
      |||||
seq2  TTACA  1053

seq1: chr1_72275414_72275643
seq2: B6Ng01-254K01.g_75_304

seq1  GAACCACTAAGGAAAGACACACCCCCACACCCAACCCCCCGGCCCCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACTAAGGAAAGACACACCCCCACACCCAACCCCCCGGCCCCAAAC  50

seq1  AAAACATCTTTCAATTTAAAAGATTTAAAAAAAAAAATTTTTTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCTTTCAATTTAAAAGATTTAAAAAAAAAAATTTTTTTTTTTTT  100

seq1  TTAAATTTTCAGCAGTGCCGCAGCATCAGCCTCCTTTCCAATCTGAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTCAGCAGTGCCGCAGCATCAGCCTCCTTTCCAATCTGAGAGC  150

seq1  TGCTGCAGACAGGGAAGACAGGGACTGAAGTTTTTCAAGGCAAAAATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGACAGGGAAGACAGGGACTGAAGTTTTTCAAGGCAAAAATCAC  200

seq1  AATTGTGTCAACTCTGGGGGGGTGGGGGGG  230
      ||||||||||||||||||||||||||||||
seq2  AATTGTGTCAACTCTGGGGGGGTGGGGGGG  230