BAC Information

Click to search

BAC

Clone NameB6Ng01-254M15
Chromosome1 (Build37)
Map Location 111,437,605 - 111,498,098
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626474
Downstream geneEG666508, Cdh7, LOC100041429, EG626652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254M15.bB6Ng01-254M15.g
ACCGA061164GA061165
length1,1611,031
definitionB6Ng01-254M15.b B6Ng01-254M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,496,939 - 111,498,098)(111,437,605 - 111,438,638)
sequence
gaattcatatataactactccattaagagttgaccccctaaatacaagaa
ttgattgaattatttcatattcaattttaagctgcaagggccatccaatg
gtttagtcctccccatctgtctccagtcattctgtggctgcttctgactt
gttttaaaacaattattcctactgaaataataattcaatagttccttcac
ttcttctatgtaaaatactttcaccctttttgtgctagtcttcagatcta
tgttgtgactattatcaaatattgtgattttttttctcctgtgaactgaa
gttcccaaaaaacctaatacccatataaaatgtctatgagtctgtctgac
gaaagatgctataaatctgatgggctgcattttggagactaagagtccag
ttgttttgggtgaaaaatggcagacagacagagagataatggatttattt
tacgtgtatttatattttgcataagtatatttaagtgtatcatgtgaggc
tcagaagagagcattgtcataatccctggaaatggcattatgtatagttc
taagccatcttacaacttgaagatgctgagagctgagcctgggtcctctg
caagatattttgtattcttaattagcattcattggctattatgttacatt
attacatctgctaagtatcatgtgaagtgttttaggttattttaaattaa
tagactgctatcttccagcaatatcaaagctaagcttgtcctcacaaaac
atctgaagtaaaattaccagtttgatatatcctataagtttaatgtggcc
acaaaaacatttgagaatgtagaatctgtacagactttgaaataatcacc
catgctggctgctatcgtgaggatatctctagagaagcaaagtaagagta
aagaactttctagaaatttgcattacacttacagatagaataaataaaaa
tttaattgaaataaatctaaatcacaatcacaatttggtaatagaccaag
taaaaacaaattgtggtatacagaatatgataatagaattgaattgtttt
ctggtttcattgctccctaattccaaaccaccttaagaataaaagctgcc
aatacagtgttaaggttcattggtctccatgaccacttataaggcctgat
atccaaaataa

gaattctctgttcagatatgtaccctagacctttagttgaataatttggt
tctttggtatttaaactcttcagttctttatacattttggatatcaatca
tacatgtcatgtagagtttgaataaaactgtttcccattctcaagacttt
ctctttttctgaccaatgttgccatttgccttacagaagatttttaagtt
ccacgtggttctatttccccacatgttctcctattaggttcattgttaca
gtctttgattcacttggacttgagttagtacagggacataaatatggaat
tatttgaaatctttctgatcagacaatccatttgacaagctctatttgtt
gaattatttactttcttttttttcagtgtgtatttctgtttctttatcaa
aactaggtgcatatatgcatgtaaagttttgtctcagtattcaattcaat
tctagcatctatttttataccaatagcatttttatggagacagtcttgaa
cctgttcttttttttttttgtagcaaggctacaaaatgataatatttttt
tattaagataatcctaacaatgtgtgaggataggagatttttccatcttt
ttaaatcatatttaatttcgttcttcagagacttgaagttttatggtgtt
tggttaaagttgcctgtcttagtcagggtttctattcctgcacaaacatc
atgaccaagaagcaagttggggaggaaagggtttattcggcttacacttc
catactgctgttcatcaccaagggaagtcaggactggaactcaagcaggt
cagaaagcagagctgatgcagaagccatggagagatgttctttactggct
tgcttccctggcttgttcagcctgctctcttataaaaccaagattaccag
cccagagatggtcccacccacatggggcctttccctgtgatcactaattg
agaaaatgccatacagttgggatctcatggaggcatttcctcaactgaag
atctttttctgtgataactccagctgggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111496939_111498098
seq2: B6Ng01-254M15.b_43_1203 (reverse)

seq1  TTATTTT-GATATCAAGCCTTTATAAGTTGTTCATGGAGA-CAATGAAC-  47
      ||||||| ||||||| ||| ||||||| || ||||||||| |||||||| 
seq2  TTATTTTGGATATCAGGCC-TTATAAG-TGGTCATGGAGACCAATGAACC  48

seq1  -TTACACTGTATTGGCAGCTTTTA-TCTTAA-GTGG-TTGGAATTAGTGA  93
       | ||||||||||||||||||||| |||||| |||| |||||||||| ||
seq2  TTAACACTGTATTGGCAGCTTTTATTCTTAAGGTGGTTTGGAATTAGGGA  98

seq1  GCAATGAAACCAGAAAACAAATTCAATTCTATTATCATTATTCTGTATAC  143
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  GCAATGAAACCAGAAAAC-AATTCAATTCTATTATCA-TATTCTGTATAC  146

seq1  CACAATTTGTTTTTACTTGGTCTATTACCAAATTGTGATTGTGATTTAGA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTGTTTTTACTTGGTCTATTACCAAATTGTGATTGTGATTTAGA  196

seq1  TTTATTTCAATTAAATTTTTTATTTATTCTATCTGTAAGTGTTAATGCAA  243
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  TTTATTTCAATTAAA-TTTTTATTTATTCTATCTGTAAGTG-TAATGCAA  244

seq1  ATTTCTAGAAAGTTCTTTACTCTTACTTTGCTTCTCTAGAGATATCCTCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGAAAGTTCTTTACTCTTACTTTGCTTCTCTAGAGATATCCTCA  294

seq1  CGATAGCAGCCAGCATGGGTGATTATTTCAAAGTCTGTACAGATTCTACA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAGCAGCCAGCATGGGTGATTATTTCAAAGTCTGTACAGATTCTACA  344

seq1  TTCTCAAATGTTTTTGTGGCCACATTAAACTTATAGGATATATCAAACTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAATGTTTTTGTGGCCACATTAAACTTATAGGATATATCAAACTG  394

seq1  GTAATTTTACTTCAGATGTTTTGTGAGGACAAGCTTAGCTTTGATATTGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTACTTCAGATGTTTTGTGAGGACAAGCTTAGCTTTGATATTGC  444

seq1  TGGAAGATAGCAGTCTATTAATTTAAAATAACCTAAAACACTTCACATGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGATAGCAGTCTATTAATTTAAAATAACCTAAAACACTTCACATGA  494

seq1  TACTTAGCAGATGTAATAATGTAACATAATAGCCAATGAATGCTAATTAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGCAGATGTAATAATGTAACATAATAGCCAATGAATGCTAATTAA  544

seq1  GAATACAAAATATCTTGCAGAGGACCCAGGCTCAGCTCTCAGCATCTTCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAAAATATCTTGCAGAGGACCCAGGCTCAGCTCTCAGCATCTTCA  594

seq1  AGTTGTAAGATGGCTTAGAACTATACATAATGCCATTTCCAGGGATTATG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAAGATGGCTTAGAACTATACATAATGCCATTTCCAGGGATTATG  644

seq1  ACAATGCTCTCTTCTGAGCCTCACATGATACACTTAAATATACTTATGCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCTCTCTTCTGAGCCTCACATGATACACTTAAATATACTTATGCA  694

seq1  AAATATAAATACACGTAAAATAAATCCATTATCTCTCTGTCTGTCTGCCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAATACACGTAAAATAAATCCATTATCTCTCTGTCTGTCTGCCA  744

seq1  TTTTTCACCCAAAACAACTGGACTCTTAGTCTCCAAAATGCAGCCCATCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACCCAAAACAACTGGACTCTTAGTCTCCAAAATGCAGCCCATCA  794

seq1  GATTTATAGCATCTTTCGTCAGACAGACTCATAGACATTTTATATGGGTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATAGCATCTTTCGTCAGACAGACTCATAGACATTTTATATGGGTA  844

seq1  TTAGGTTTTTTGGGAACTTCAGTTCACAGGAGAAAAAAAATCACAATATT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTTTTGGGAACTTCAGTTCACAGGAGAAAAAAAATCACAATATT  894

seq1  TGATAATAGTCACAACATAGATCTGAAGACTAGCACAAAAAGGGTGAAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATAGTCACAACATAGATCTGAAGACTAGCACAAAAAGGGTGAAAG  944

seq1  TATTTTACATAGAAGAAGTGAAGGAACTATTGAATTATTATTTCAGTAGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACATAGAAGAAGTGAAGGAACTATTGAATTATTATTTCAGTAGG  994

seq1  AATAATTGTTTTAAAACAAGTCAGAAGCAGCCACAGAATGACTGGAGACA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTGTTTTAAAACAAGTCAGAAGCAGCCACAGAATGACTGGAGACA  1044

seq1  GATGGGGAGGACTAAACCATTGGATGGCCCTTGCAGCTTAAAATTGAATA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGAGGACTAAACCATTGGATGGCCCTTGCAGCTTAAAATTGAATA  1094

seq1  TGAAATAATTCAATCAATTCTTGTATTTAGGGGGTCAACTCTTAATGGAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAATTCAATCAATTCTTGTATTTAGGGGGTCAACTCTTAATGGAG  1144

seq1  TAGTTATATATGAATTC  1160
      |||||||||||||||||
seq2  TAGTTATATATGAATTC  1161


seq1: chr1_111437605_111438638
seq2: B6Ng01-254M15.g_70_1100

seq1  GAATTCTCTGTTCAGATATGTACCCTAGACCTTTAGTTGAATAATTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTCAGATATGTACCCTAGACCTTTAGTTGAATAATTTGGT  50

seq1  TCTTTGGTATTTAAACTCTTCAGTTCTTTATACATTTTGGATATCAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTATTTAAACTCTTCAGTTCTTTATACATTTTGGATATCAATCA  100

seq1  TACATGTCATGTAGAGTTTGAATAAAACTGTTTCCCATTCTCAAGACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTCATGTAGAGTTTGAATAAAACTGTTTCCCATTCTCAAGACTTT  150

seq1  CTCTTTTTCTGACCAATGTTGCCATTTGCCTTACAGAAGATTTTTAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCTGACCAATGTTGCCATTTGCCTTACAGAAGATTTTTAAGTT  200

seq1  CCACGTGGTTCTATTTCCCCACATGTTCTCCTATTAGGTTCATTGTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGGTTCTATTTCCCCACATGTTCTCCTATTAGGTTCATTGTTACA  250

seq1  GTCTTTGATTCACTTGGACTTGAGTTAGTACAGGGACATAAATATGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGATTCACTTGGACTTGAGTTAGTACAGGGACATAAATATGGAAT  300

seq1  TATTTGAAATCTTTCTGATCAGACAATCCATTTGACAAGCTCTATTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAATCTTTCTGATCAGACAATCCATTTGACAAGCTCTATTTGTT  350

seq1  GAATTATTTACTTTCTTTTTTTTCAGTGTGTATTTCTGTTTCTTTATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTTACTTTCTTTTTTTTCAGTGTGTATTTCTGTTTCTTTATCAA  400

seq1  AACTAGGTGCATATATGCATGTAAAGTTTTGTCTCAGTATTCAATTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTGCATATATGCATGTAAAGTTTTGTCTCAGTATTCAATTCAAT  450

seq1  TCTAGCATCTATTTTTATACCAATAGCATTTTTATGGAGACAGTCTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATCTATTTTTATACCAATAGCATTTTTATGGAGACAGTCTTGAA  500

seq1  CCTGTTCTTTTTTTTTTTTGTAGCAAGGCTACAAAATGATAATATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTTTTTTTTTTTTGTAGCAAGGCTACAAAATGATAATATTTTTT  550

seq1  TATTAAGATAATCCTAACAATGTGTGAGGATAGGAGATTTTTCCATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGATAATCCTAACAATGTGTGAGGATAGGAGATTTTTCCATCTTT  600

seq1  TTAAATCATATTTAATTTCGTTCTTCAGAGACTTGAAGTTTTATGGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCATATTTAATTTCGTTCTTCAGAGACTTGAAGTTTTATGGTGTT  650

seq1  TGGTTAAAGTTGCCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAAGTTGCCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATC  700

seq1  ATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACACTTC  750

seq1  CATACTGCTGTTCATCACCAAGGGAAGTCAGGACTGGAACTCAAGCAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGCTGTTCATCACCAAGGGAAGTCAGGACTGGAACTCAAGCAGGT  800

seq1  CAGAAAGCAGGAGCTGATGCAGAAGCCATGGAGAGATGTTCTTTACTGGC  850
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCA-GAGCTGATGCAGAAGCCATGGAGAGATGTTCTTTACTGGC  849

seq1  TTGCTTCCCCTGGCTTGTTCAGCCTGCTCTCTTATAAAACCAAGATTACC  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTT-CCCTGGCTTGTTCAGCCTGCTCTCTTATAAAACCAAGATTACC  898

seq1  AGCCCAGAGATGGTCCCACCCACATGGGGCCCTTCCCTGTTGATCACTAA  950
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  AGCCCAGAGATGGTCCCACCCACATGGGGCCTTTCCCTG-TGATCACTAA  947

seq1  TTGAGAAAATGCCATACAGTT-GGATCTCATGGAGGCATTTCCTCAACTG  999
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGAGAAAATGCCATACAGTTGGGATCTCATGGAGGCATTTCCTCAACTG  997

seq1  AAGATCCTTTTTCTGTGATAACTCCAGCTGTGTCA  1034
      ||||| |||||||||||||||||||||||| ||||
seq2  AAGAT-CTTTTTCTGTGATAACTCCAGCTGGGTCA  1031


| Home | SequenceCutter | Blast | Download |