BAC Information

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BAC

Clone NameB6Ng01-255C01
Chromosome1 (Build37)
Map Location 58,723,117 - 58,724,236
singlet/doubletsinglet
Overlap geneAls2cr12
Upstream gene2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397
Downstream geneCflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255C01.bB6Ng01-255C01.g
ACCGA061411GA061412
length3371,104
definitionB6Ng01-255C01.b B6Ng01-255C01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
cacaagatgaccagcagagtcaattaacctggacccttggggctctcaga
gactgaaacaccaagcaaaatacatacatgggttggacctaggccttcct
gcgtatatgtagcacatgtgcagcttggtcttcatgtgggtcccaaacaa
ctggagtgggggctatcccaaaaagccattgcctgtatgtgggatatgtt
ctactagctgggttgccttgtctggccagtgggagaggaagagcctaccc
tcacagagacttgaagtgccagggtggggggacactcagtggggtctgac
ccactcagagaaggggaggaggatggggaaggattgt
gaattcatgaatttgaatttaaattattcagggctctgctgctgggtctt
ccaacactgagaacaggtgaatttacctttgccctaaggctaagtatgac
tttttattatgaacaatctgactaaccaagagctttaaagagaaaaaaat
gctagagaaagcacagctattacttcagcagagaagacagaaagacaaac
aggagacagaaactaaaccacacaccaaagaaagagcagatgctgccgac
tgatcccacatggctactgtcacagcacacaggagacccacctcacccca
tgcatctccccagcagaggtcagagcgcccagcccaggctgaaaggttct
caggttcagtccagtctggaaccagtactgttttcagttattctaggttt
ctctttggcctgctttcccagattttacacacaaacctgtcgtttctttc
tctcctccacagaatgtagaataataaaaaagtttgagttacagtcggaa
gaaaaaaagaagaaaatgaatgagtccatcagtgctgtttctgataactt
cgctcgagagaaagaggtaactggaagtagttgagagtagtctaggtgga
gcagctgagcccactgggcctatgtacttgggtgacttgttggtcccaat
ggacctactctcctctttgttcaactttcctggaaatatatgcaaaaaga
atgactattatagtttgcacttgattgcttccataaaccatgaccaaaag
caagtggaaggaaaaggatttatttcatcttaaaaggggcagttcatcct
caacttccaatgcaggaaaccaaggcagggacttgaaacagaaaccacag
aggaacactgctttctggcttgctcattcttattcagctgccattcttat
acaggccaggaccacctgcctagtgatggtaccacccacagtaggctgga
ccatcccacatcctttggctgtcaagaaaatgccccataggcatgcctac
agcatgagatgggtacagtccccaatgaaaccccctgagtactatgggct
gagtcaagtgacagctgagcagtgggaggaggattgttgagtcttttagc
tagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_58723117_58724236
seq2: B6Ng01-255C01.g_66_1169 (reverse)

seq1  CCTAGCTAAAAAGGACCCCAAGACAATCCTCCTCCAACTTGGCTTCAGCT  50
      |||||||||||  ||| |    ||||||||||||| |||  || ||||||
seq2  CCTAGCTAAAA--GACTC---AACAATCCTCCTCCCACT--GC-TCAGCT  42

seq1  GTCAACTTGACTCAGCCCATAGTTACTTCAGGGGGTTTCAATTTGGGGAC  100
      ||| |||||||||||||||||| ||| |||||||||||||  ||||||||
seq2  GTC-ACTTGACTCAGCCCATAG-TAC-TCAGGGGGTTTCA--TTGGGGAC  87

seq1  TGTACCCATCTCATTGCTTGTAGGCATGCCTATGGGGGCATTTTCTTGAC  150
      ||||||||||||| ||| ||||||||||||||| ||||||||||||||||
seq2  TGTACCCATCTCA-TGC-TGTAGGCATGCCTAT-GGGGCATTTTCTTGAC  134

seq1  AGCCAAAGGATGTGGGATGGTCCAGCCTACTGTGGGTGGTACCATCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGGATGTGGGATGGTCCAGCCTACTGTGGGTGGTACCATCACTA  184

seq1  GGCAGGTGGTCCTGGCCTGTATAAGAATGGCAGCTGAATAAGAATGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGGTCCTGGCCTGTATAAGAATGGCAGCTGAATAAGAATGAGCA  234

seq1  AGCCAGAAAGCAGTGTTCCTCTGTGGTTTCTGTTTCAAGTCCCTGCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAAGCAGTGTTCCTCTGTGGTTTCTGTTTCAAGTCCCTGCCTTG  284

seq1  GTTTCCTGCATTGGAAGTTGAGGATGAACTGCCCCTTTTAAGATGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTGCATTGGAAGTTGAGGATGAACTGCCCCTTTTAAGATGAAATA  334

seq1  AATCCTTTTCCTTCCACTTGCTTTTGGTCATGGTTTATGGAAGCAATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTTCCTTCCACTTGCTTTTGGTCATGGTTTATGGAAGCAATCAA  384

seq1  GTGCAAACTATAATAGTCATTCTTTTTGCATATATTTCCAGGAAAGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAACTATAATAGTCATTCTTTTTGCATATATTTCCAGGAAAGTTGA  434

seq1  ACAAAGAGGAGAGTAGGTCCATTGGGACCAACAAGTCACCCAAGTACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGGAGAGTAGGTCCATTGGGACCAACAAGTCACCCAAGTACATA  484

seq1  GGCCCAGTGGGCTCAGCTGCTCCACCTAGACTACTCTCAACTACTTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGTGGGCTCAGCTGCTCCACCTAGACTACTCTCAACTACTTCCAG  534

seq1  TTACCTCTTTCTCTCGAGCGAAGTTATCAGAAACAGCACTGATGGACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCTTTCTCTCGAGCGAAGTTATCAGAAACAGCACTGATGGACTCA  584

seq1  TTCATTTTCTTCTTTTTTTCTTCCGACTGTAACTCAAACTTTTTTATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCTTCTTTTTTTCTTCCGACTGTAACTCAAACTTTTTTATTAT  634

seq1  TCTACATTCTGTGGAGGAGAGAAAGAAACGACAGGTTTGTGTGTAAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTCTGTGGAGGAGAGAAAGAAACGACAGGTTTGTGTGTAAAATC  684

seq1  TGGGAAAGCAGGCCAAAGAGAAACCTAGAATAACTGAAAACAGTACTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGCAGGCCAAAGAGAAACCTAGAATAACTGAAAACAGTACTGGT  734

seq1  TCCAGACTGGACTGAACCTGAGAACCTTTCAGCCTGGGCTGGGCGCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACTGGACTGAACCTGAGAACCTTTCAGCCTGGGCTGGGCGCTCTG  784

seq1  ACCTCTGCTGGGGAGATGCATGGGGTGAGGTGGGTCTCCTGTGTGCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCTGGGGAGATGCATGGGGTGAGGTGGGTCTCCTGTGTGCTGTG  834

seq1  ACAGTAGCCATGTGGGATCAGTCGGCAGCATCTGCTCTTTCTTTGGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGCCATGTGGGATCAGTCGGCAGCATCTGCTCTTTCTTTGGTGTG  884

seq1  TGGTTTAGTTTCTGTCTCCTGTTTGTCTTTCTGTCTTCTCTGCTGAAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAGTTTCTGTCTCCTGTTTGTCTTTCTGTCTTCTCTGCTGAAGTA  934

seq1  ATAGCTGTGCTTTCTCTAGCATTTTTTTCTCTTTAAAGCTCTTGGTTAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTGCTTTCTCTAGCATTTTTTTCTCTTTAAAGCTCTTGGTTAGT  984

seq1  CAGATTGTTCATAATAAAAAGTCATACTTAGCCTTAGGGCAAAGGTAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGTTCATAATAAAAAGTCATACTTAGCCTTAGGGCAAAGGTAAAT  1034

seq1  TCACCTGTTCTCAGTGTTGGAAGACCCAGCAGCAGAGCCCTGAATAATTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGTTCTCAGTGTTGGAAGACCCAGCAGCAGAGCCCTGAATAATTT  1084

seq1  AAATTCAAATTCATGAATTC  1120
      ||||||||||||||||||||
seq2  AAATTCAAATTCATGAATTC  1104