BAC Information

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BAC

Clone NameB6Ng01-255G06
Chromosome1 (Build37)
Map Location 170,507,789 - 170,663,571
singlet/doubletdoublet
Overlap genenone
Upstream geneRxrg, Lmx1a, LOC100039879, Pbx1
Downstream geneEG383613, Nuf2, Rgs5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255G06.bB6Ng01-255G06.g
ACCGA061608GA061609
length1,1761,169
definitionB6Ng01-255G06.b B6Ng01-255G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,662,381 - 170,663,571)(170,507,789 - 170,508,952)
sequence
gaattcagggtggcgttgattgatgacattgcagtgtatagccagacatg
ggaagaccacgctgagcatgtaaaacaagaattggggtagcttttacaaa
caagcttgacagtgtggccatgacatgtcagcctggcatgctgaggtgac
atatttaggacacagacaggagaagcgggcagccaacactctgctatggt
ggccttctctgtttctcaatagaccatttcatgaggaaatgttagacaaa
gattactgaacgttgctaaccaattgctccagatcagtcattgttctgtt
tacagatcactttactgagccatgaagaccacccaggatggtgacagggc
agaaacaattgggtagcttgcccctaattttaaattttaaaaggtgttcc
tctgaagagttacagaattgaaacaaaaatagttcataagtttgttatcc
tccatccagatgttcataattgctaattacttacggtctgtatttcagtc
tccaataaggagaggtagaggttacatttaaaacaagtattttggccacc
ttggagtactacggggcagatctactttctcttatgtctttctgatcaaa
gactgagtgggttttttttccttgaaaagtcaaacttaagagccagaatg
gggtcagcaagccagcagcccagaaatcatctccagttcaaatgaaatta
gccaatttcataaagatttctctggcatagtttgaactgcaagtcccgct
ctcctgggggaaggagtaacctcacatcttattattctttcttaccctga
aggtgtctcttgtcatctattatcatataaacgcagcactgctacttacc
cttcatatggacagtgcattgcccccaccacactactctgtctttgaagg
caaagctaggctcatctcgttctagggtcctgtgacagtttgcagcccag
tgtaaataaatgagggtttgctcacttgctgagccacaggcagatgtgtc
agttcttccataagcatgtatctttctgtgtatttgtcctctgtggccca
tagaattacaggctgctgtgacgccagcactcttgccatatatgaaagca
tgatagggctgatagccacttcccgggcctgaaggaagtacacatgaagt
tattaagttcggctcctctagtcacg

gaattcttcatgactttttattgctctggctagatctgttagtacagtat
taaacagaagaattttgagtgggaattattgttatgtttgtgattctact
gggggaagtatctagtctttcctaattaaatatgatgttagcttaaatgt
ttttctcaatgtttttaataagactgtagaaattcacttctatttctagt
ttgttgaaaaagattttttaaaatcgtgaaatcaggttagctttttcaaa
tatgtttttgagatgatcacatgatcttttcatcactataaaaattatcc
gaggtaattaatttgtaataaaatattttgtctcattgttttgaggttcc
attcgtagtgaatcaggctccttgtgttagcttgtagcagggctacactg
tgtatcagggacactgggcagagaaaaattctttatgctgcgaggggaga
acaaagagaagagggaggcagctgcaaacccacagttctctttgagggca
tgaccatgatgacctcaggcccttgtactagactccaacctctgaaacct
tccatcagtgacaaacagtgtcactggggaacacacctttatagacagat
tttaggggttattcagcagttaggtagtggcacgttcctttagtcccagc
actcaggaggcaaatgcaagtggatctctgagttcaaggccagcgtggtc
tatagaacaagttccagatcagccaaagctacacagggaaaccctgcctc
aacaagccctaccccaaaataagagacatagtcttcttgtcatatgtttt
attttatgtcaaaataatgtctccttaaaaaaatctaggaaatattttct
cctctcaattttacaggcccatgaaaaactggtattatttgaatgtttgg
tggatgtgtcatcaaattatctggagcttttaatttttagggggatggca
tgactttgtgactatcagtttatatatttgataaatattcagatggctta
tttttgtcagtttattatgtgttcttttttaagaaaaatattctgctata
ataacaaggttaataataaggttgctagccatgataatcactcaatgaaa
tttccttataataacctctatctcaaggtcaagaattatgtcctacctct
caattctgaaatatttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170662381_170663571
seq2: B6Ng01-255G06.b_46_1221 (reverse)

seq1  CGTGACTAGGAAGAAGCAGAACTTAAATTTAAACTCATGTGTACTTTTCC  50
      |||||||||  || ||| ||||||||   |||  ||||||||||  ||||
seq2  CGTGACTAG--AGGAGCCGAACTTAA---TAACTTCATGTGTAC--TTCC  43

seq1  TTCAAGCCCGGGAAGTGGCTTAATCAGCCCCTTATCATGCTTT-TCATAT  99
      |||| |||||||||||||||  ||||||||  |||||||||||   ||||
seq2  TTCAGGCCCGGGAAGTGGCT--ATCAGCCC--TATCATGCTTTCATATAT  89

seq1  GGC-AGAGTTGCTGGCCGTCACAGCAGCCTGTAATTCTAATTGGGCCACA  148
      ||| |||| |||||| |||||||||||||||||||||||  |||||||||
seq2  GGCAAGAG-TGCTGG-CGTCACAGCAGCCTGTAATTCTA--TGGGCCACA  135

seq1  GAGACAAAATACACAGAAAGATACATGCTTAATGGAAGAACTGAACACAT  198
      |||   |||||||||||||||||||||||| |||||||||||| ||||||
seq2  GAGGACAAATACACAGAAAGATACATGCTT-ATGGAAGAACTG-ACACAT  183

seq1  CTGCCTGTGGCTCAGCAAGTGAGCAAACCCTCATTTATTTACACTGGGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTGGCTCAGCAAGTGAGCAAACCCTCATTTATTTACACTGGGCT  233

seq1  GCAAACTGTCACAGGACCCTAGAACGAGATGAGCCTAGCTTTGCCTTCAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTGTCACAGGACCCTAGAACGAGATGAGCCTAGCTTTGCCTTCAA  283

seq1  AGACAGAGTAGTGTGGTGGGGGCAATGCACTGTCCATATGAAGGGTAAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGTAGTGTGGTGGGGGCAATGCACTGTCCATATGAAGGGTAAGT  333

seq1  AGCAGTGCTGCGTTTATATGATAATAGATGACAAGAGACACCTTCAGGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGCTGCGTTTATATGATAATAGATGACAAGAGACACCTTCAGGGT  383

seq1  AAGAAAGAATAATAAGATGTGAGGTTACTCCTTCCCCCAGGAGAGCGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAATAATAAGATGTGAGGTTACTCCTTCCCCCAGGAGAGCGGGA  433

seq1  CTTGCAGTTCAAACTATGCCAGAGAAATCTTTATGAAATTGGCTAATTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGTTCAAACTATGCCAGAGAAATCTTTATGAAATTGGCTAATTTC  483

seq1  ATTTGAACTGGAGATGATTTCTGGGCTGCTGGCTTGCTGACCCCATTCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACTGGAGATGATTTCTGGGCTGCTGGCTTGCTGACCCCATTCTG  533

seq1  GCTCTTAAGTTTGACTTTTCAAGGAAAAAAAACCCACTCAGTCTTTGATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAAGTTTGACTTTTCAAGGAAAAAAAACCCACTCAGTCTTTGATC  583

seq1  AGAAAGACATAAGAGAAAGTAGATCTGCCCCGTAGTACTCCAAGGTGGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACATAAGAGAAAGTAGATCTGCCCCGTAGTACTCCAAGGTGGCC  633

seq1  AAAATACTTGTTTTAAATGTAACCTCTACCTCTCCTTATTGGAGACTGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTGTTTTAAATGTAACCTCTACCTCTCCTTATTGGAGACTGAA  683

seq1  ATACAGACCGTAAGTAATTAGCAATTATGAACATCTGGATGGAGGATAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGACCGTAAGTAATTAGCAATTATGAACATCTGGATGGAGGATAAC  733

seq1  AAACTTATGAACTATTTTTGTTTCAATTCTGTAACTCTTCAGAGGAACAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATGAACTATTTTTGTTTCAATTCTGTAACTCTTCAGAGGAACAC  783

seq1  CTTTTAAAATTTAAAATTAGGGGCAAGCTACCCAATTGTTTCTGCCCTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAATTTAAAATTAGGGGCAAGCTACCCAATTGTTTCTGCCCTGT  833

seq1  CACCATCCTGGGTGGTCTTCATGGCTCAGTAAAGTGATCTGTAAACAGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCCTGGGTGGTCTTCATGGCTCAGTAAAGTGATCTGTAAACAGAA  883

seq1  CAATGACTGATCTGGAGCAATTGGTTAGCAACGTTCAGTAATCTTTGTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTGATCTGGAGCAATTGGTTAGCAACGTTCAGTAATCTTTGTCT  933

seq1  AACATTTCCTCATGAAATGGTCTATTGAGAAACAGAGAAGGCCACCATAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCCTCATGAAATGGTCTATTGAGAAACAGAGAAGGCCACCATAG  983

seq1  CAGAGTGTTGGCTGCCCGCTTCTCCTGTCTGTGTCCTAAATATGTCACCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTTGGCTGCCCGCTTCTCCTGTCTGTGTCCTAAATATGTCACCT  1033

seq1  CAGCATGCCAGGCTGACATGTCATGGCCACACTGTCAAGCTTGTTTGTAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCCAGGCTGACATGTCATGGCCACACTGTCAAGCTTGTTTGTAA  1083

seq1  AAGCTACCCCAATTCTTGTTTTACATGCTCAGCGTGGTCTTCCCATGTCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACCCCAATTCTTGTTTTACATGCTCAGCGTGGTCTTCCCATGTCT  1133

seq1  GGCTATACACTGCAATGTCATCAATCAACGCCACCCTGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATACACTGCAATGTCATCAATCAACGCCACCCTGAATTC  1176


seq1: chr1_170507789_170508952
seq2: B6Ng01-255G06.g_66_1234

seq1  GAATTCTTCATGACTTTTTATTGCTCTGGCTAGATCTGTTAGTACAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATGACTTTTTATTGCTCTGGCTAGATCTGTTAGTACAGTAT  50

seq1  TAAACAGAAGAATTTTGAGTGGGAATTATTGTTATGTTTGTGATTCTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAAGAATTTTGAGTGGGAATTATTGTTATGTTTGTGATTCTACT  100

seq1  GGGGGAAGTATCTAGTCTTTCCTAATTAAATATGATGTTAGCTTAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGTATCTAGTCTTTCCTAATTAAATATGATGTTAGCTTAAATGT  150

seq1  TTTTCTCAATGTTTTTAATAAGACTGTAGAAATTCACTTCTATTTCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAATGTTTTTAATAAGACTGTAGAAATTCACTTCTATTTCTAGT  200

seq1  TTGTTGAAAAAGATTTTTTAAAATCGTGAAATCAGGTTAGCTTTTTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAAAAGATTTTTTAAAATCGTGAAATCAGGTTAGCTTTTTCAAA  250

seq1  TATGTTTTTGAGATGATCACATGATCTTTTCATCACTATAAAAATTATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTGAGATGATCACATGATCTTTTCATCACTATAAAAATTATCC  300

seq1  GAGGTAATTAATTTGTAATAAAATATTTTGTCTCATTGTTTTGAGGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAATTAATTTGTAATAAAATATTTTGTCTCATTGTTTTGAGGTTCC  350

seq1  ATTCGTAGTGAATCAGGCTCCTTGTGTTAGCTTGTAGCAGGGCTACACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTAGTGAATCAGGCTCCTTGTGTTAGCTTGTAGCAGGGCTACACTG  400

seq1  TGTATCAGGGACACTGGGCAGAGAAAAATTCTTTATGCTGCGAGGGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAGGGACACTGGGCAGAGAAAAATTCTTTATGCTGCGAGGGGAGA  450

seq1  ACAAAGAGAAGAGGGAGGCAGCTGCAAACCCACAGTTCTCTTTGAGGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGAAGAGGGAGGCAGCTGCAAACCCACAGTTCTCTTTGAGGGCA  500

seq1  TGACCATGATGACCTCAGGCCCTTGTACTAGACTCCAACCTCTGAAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGATGACCTCAGGCCCTTGTACTAGACTCCAACCTCTGAAACCT  550

seq1  TCCATCAGTGACAAACAGTGTCACTGGGGAACACACCTTTATAGACAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAGTGACAAACAGTGTCACTGGGGAACACACCTTTATAGACAGAT  600

seq1  TTTAGGGGTTATTCAGCAGTTAGGTAGTGGCACGTTCCTTTAGTCCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGGTTATTCAGCAGTTAGGTAGTGGCACGTTCCTTTAGTCCCAGC  650

seq1  ACTCAGGAGGCAAATGCAAGTGGATCTCTGAGTTCAAGGCCAGCGTGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGAGGCAAATGCAAGTGGATCTCTGAGTTCAAGGCCAGCGTGGTC  700

seq1  TATAGAACAAGTTCCAGATCAGCCAAAGCTACACAGGGAAACCCTGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAACAAGTTCCAGATCAGCCAAAGCTACACAGGGAAACCCTGCCTC  750

seq1  AACAAGCCCTACCCCAAAATAAGAGACATAGTCTTCTTGTCATATGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCCCTACCCCAAAATAAGAGACATAGTCTTCTTGTCATATGTTTT  800

seq1  ATTTTATGTCAAAATAATGTCTCCTTAAAAAAATCTAGGAAATATTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGTCAAAATAATGTCTCCTTAAAAAAATCTAGGAAATATTTTCT  850

seq1  CCTCTCAATTTTACAGGCCCATGAAAAACTGGTATTATTTGAATGTTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAATTTTACAGGCCCATGAAAAACTGGTATTATTTGAATGTTTGG  900

seq1  TGGAATGTGTCATCAAATTATCTGGAGCTTTTAATTTTTAGGGGGATGGC  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGG-ATGTGTCATCAAATTATCTGGAGCTTTTAATTTTTAGGGGGATGGC  949

seq1  ATGACTTTGTGACTATCAGTTTAATATATTTGATAAATATTCAGATGGCT  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGACTTTGTGACTATCAGTTT-ATATATTTGATAAATATTCAGATGGCT  998

seq1  TATTTTTTGTCAGTTTTATATTGTGTTCCTTTTTTAGAAAAATATTCTGC  1050
      || |||||||||| |||||  ||||||| ||||| |||||||||||||||
seq2  TA-TTTTTGTCAG-TTTATTATGTGTTCTTTTTTAAGAAAAATATTCTGC  1046

seq1  TATA--TACAAG-----TTATATAGTTGCTAG-CATGAT-ATCACTC-AT  1090
      ||||   |||||     | |||  |||||||| |||||| ||||||| ||
seq2  TATAATAACAAGGTTAATAATAAGGTTGCTAGCCATGATAATCACTCAAT  1096

seq1  GATATTTCCTTATAATAACTTTTATCTCTAAAGGGTCAGGATTAGTGCTT  1140
      || |||||||||||||||| | ||||||  ||||   || ||||   | |
seq2  GAAATTTCCTTATAATAACCTCTATCTC--AAGGTCAAGAATTATGTCCT  1144

seq1  ACCTCTCATTTCTGATA-ATTTCTT  1164
      |||||||| |||||| | |||||||
seq2  ACCTCTCAATTCTGAAATATTTCTT  1169


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