BAC Information

Click to search

BAC

Clone NameB6Ng01-255J05
Chromosome1 (Build37)1 (Build37)
Map Location 46,716,606 - 46,716,94753,421,407 - 53,422,353
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
Downstream geneSlc39a10, EG227061, LOC666869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255J05.bB6Ng01-255J05.g
ACCGA061750GA061751
length978952
definitionB6Ng01-255J05.b B6Ng01-255J05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,716,606 - 46,716,947)(53,421,407 - 53,422,353)
sequence
gaattcatttcagtccatttcctttaagcatggtaaccctccctaggtcc
ttgttaaacaggttttgtttgtgataagaaatgttaaacggtagttttat
aaacagtgactgtatcagttaattttgttatttatttgacgatggcctaa
agaaaataaaattatgaagctaaccagtgttaggatccctagtttgagag
ctcaaaagatatctctaagttctctgggaaataaggcaaggatgtcatta
tgtctatgtgcattttcttttaaagacttggtagaagtagggaggaagag
aaaacaaaaaagtgacacatagaaaataatagtttggcccgtccggtcca
ctccagcaccagggtgccttgcctacggagtctccggacacccacaagga
cccacacaggatcatccacgggatcctaagacctctgatgagtggaacac
agcgtctgctccaatccaatcatgcaggacctgagactgtattaactagg
aaagcagataacccggcctgatcaggggcacaagtccctcccggtccact
ccagcaccgaggttcctggcgcgcagagtttctagacaccccaaagtcct
cacaggaccctctacgggatcttaagacctatggtgagtggaacacaact
tctgccaggaggcaggttcgaacaccagatatctggggaccttccctgca
agaagagaacttgcctgcagagaatactctgaccactgaaactaagtaga
gagctagtctcccaggtctgctgatagaggctaacagagtcacctgagga
acaagctctaaccagagacaactataacatctagctataataactcactt
aaagaaatacaggagaacactgctaaaccggtagaaaaccttaaagagga
aacacaaaaattcccttaaagaattgcaggaaaacacgaccaaaccaggt
gatggaattgaataaaacccatccagac
gaattcctggttgtccttcagcactttagcccgctttctttctctctttc
tttccttctttccttctttctttctttctttctttctttctttctttctt
tctttctttctttctttctttctttctttctttctttcctctctctctct
ctctctctctctctctctctctctctctcttttttccccagcaggatcag
gagaggaacctgaactaataggcaggaggcttcctttccggccctacaat
tccttaaacataacttcagacaacgttgaagttccaaagaggaaaatgaa
gcaagaaccaaaaaccacgtggaatggcaaggaccaggctgcctttgaga
ttcctggatgctccctggctcactgtggagtggtatgtgtgcatctgctc
taacaggcttcagggctgaatataagaaggggtcagtggaaaagctttag
gattaaggaaatagacaatttttaaaaggcagctgaaaccaagaacaccc
tgctctgctgcagcttgcaatgtgttttgtgctcctcctgtgggtaacct
agagccgtcactccaattcagaatactcagtgtttcttgctgtagttatt
catttatgcctgtatggaaaacatggtttaccatgtatggcttgtcatcg
tgattttgcacaccttgaattcatgagaacttttacacaaggggtttctc
ttcactctcagagtctgaattgtctgatgctctgagtaaagttaactatg
cctgaggctttattgcatgagctctgcatgacatcgtttttcaagtccat
tctcccaccttccaccacctctgaagctgtgaccgatcatttgtcattat
tgttccagcttttataaatttgtttttgagatggaggatttcactgtgta
gatgttttgtttgttttttcggtttactggtgatggtgggtgtgaggggt
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_46716606_46716947
seq2: B6Ng01-255J05.b_45_380

seq1  GAATCCATTTCAGCCCATTTCCTTTAAGCATTGTAGCCCTCCCTAGGTCC  50
      |||| |||||||| ||||||||||||||||| ||| ||||||||||||||
seq2  GAATTCATTTCAGTCCATTTCCTTTAAGCATGGTAACCCTCCCTAGGTCC  50

seq1  TTGTTAAACAGGTTTTGTTTGTTTATGGTAAGAAATGTTAAACAGGTAGT  100
      |||||||||||||||||||||    || ||||||||||||||| ||||||
seq2  TTGTTAAACAGGTTTTGTTTG----TGATAAGAAATGTTAAAC-GGTAGT  95

seq1  TTTATAAACAGTGACTGTATCAGTTAATTTTGTTATTTATTTGAAGATGG  150
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTATAAACAGTGACTGTATCAGTTAATTTTGTTATTTATTTGACGATGG  145

seq1  CCTAAAGAAAATAAAACTTTGAAGCTAACCAGTGTTAGGATCCCTAGTTC  200
      |||||||||||||||| | |||||||||||||||||||||||||||||| 
seq2  CCTAAAGAAAATAAAATTATGAAGCTAACCAGTGTTAGGATCCCTAGTTT  195

seq1  GAGAACCCAAAAGATATCTCTAAGTTCTCTGGGGAATAAGGCAAGGATGT  250
      |||| | |||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGAGCTCAAAAGATATCTCTAAGTTCTCTGGGAAATAAGGCAAGGATGT  245

seq1  TCTTATGTCTATGTGCATTTTCTTTTAAAGACTTGGTAGAAAGAGGGAGG  300
        |||||||||||||||||||||||||||||||||||||||  |||||||
seq2  CATTATGTCTATGTGCATTTTCTTTTAAAGACTTGGTAGAAGTAGGGAGG  295

seq1  GAGAGAAAACACAAAAAGTGACACATAGAAAATAATAGTTTG  342
       |||||||||| ||||||||||||||||||||||||||||||
seq2  AAGAGAAAACA-AAAAAGTGACACATAGAAAATAATAGTTTG  336

seq1: chr1_53421407_53422353
seq2: B6Ng01-255J05.g_68_1019

seq1  GAATTCCTGGTTGTCCTTCAGCACTTTAGCCCGCTTTCTTTCTCTCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTTGTCCTTCAGCACTTTAGCCCGCTTTCTTTCTCTCTTTC  50

seq1  TTTCCTTCTTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  100

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTCTCTCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTCTCTCTCTCT  150

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTCCCCAGCAGGATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTCCCCAGCAGGATCAG  200

seq1  GAGAGGAACCTGAACTAATAGGCAGGAGGCTTCCTTTCCGGCCCTACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAACCTGAACTAATAGGCAGGAGGCTTCCTTTCCGGCCCTACAAT  250

seq1  TCCTTAAACATAACTTCAGACAACGTTGAAGTTCCAAAGAGGAAAATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAACATAACTTCAGACAACGTTGAAGTTCCAAAGAGGAAAATGAA  300

seq1  GCAAGAACCAAAAACCACGTGGAATGGCAAGGACCAGGCTGCCTTTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAACCAAAAACCACGTGGAATGGCAAGGACCAGGCTGCCTTTGAGA  350

seq1  TTCCTGGATGCTCCCTGGCTCACTGTGGAGTGGTATGTGTGCATCTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGATGCTCCCTGGCTCACTGTGGAGTGGTATGTGTGCATCTGCTC  400

seq1  TAACAGGCTTCAGGGCTGAATATAAGAAGGGGTCAGTGGAAAAGCTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGCTTCAGGGCTGAATATAAGAAGGGGTCAGTGGAAAAGCTTTAG  450

seq1  GATTAAGGAAATAGACAATTTTTAAAAGGCAGCTGAAACCAAGAACACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGGAAATAGACAATTTTTAAAAGGCAGCTGAAACCAAGAACACCC  500

seq1  TGCTCTGCTGCAGCTTGCAATGTGTTTTGTGCTCCTCCTGTGGGTAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCTGCAGCTTGCAATGTGTTTTGTGCTCCTCCTGTGGGTAACCT  550

seq1  AGAGCCGTCACTCCAATTCAGAATACTCAGTGTTTCTTGCTGTAGTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCGTCACTCCAATTCAGAATACTCAGTGTTTCTTGCTGTAGTTATT  600

seq1  CATTTATGCCTGTATGGAAAACATGGTTTACCATGTATGGCTTGTCATCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATGCCTGTATGGAAAACATGGTTTACCATGTATGGCTTGTCATCG  650

seq1  TGATTTTGCACACCTTGAATTCATGAGAACTTTTACACAAGGGGTTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGCACACCTTGAATTCATGAGAACTTTTACACAAGGGGTTTCTC  700

seq1  TTCACTCTCAGAGTCTGAATTGTCTGATGCTCTGAGTAAAGTTAACTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTCAGAGTCTGAATTGTCTGATGCTCTGAGTAAAGTTAACTATG  750

seq1  CCTGAGGCTTTATTGCATGAGCTCTGCATGACATCGTTTTTCAAGTCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGCTTTATTGCATGAGCTCTGCATGACATCGTTTTTCAAGTCCAT  800

seq1  TCTCCCACCTTCCACCACCTCTGAAGCTGTGACCGATCA-TTGTCATTAT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTCCCACCTTCCACCACCTCTGAAGCTGTGACCGATCATTTGTCATTAT  850

seq1  TGTTCCAGCTTTTATAAATTTGTTTTTGAGATGGAGGATTTCACTGTGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGCTTTTATAAATTTGTTTTTGAGATGGAGGATTTCACTGTGTA  900

seq1  GATG-TTTGTTTG-TTTTTCGGTTTACT-GTGATGGTGGGTG-GAGGGGT  945
      |||| |||||||| |||||||||||||| ||||||||||||| |||||||
seq2  GATGTTTTGTTTGTTTTTTCGGTTTACTGGTGATGGTGGGTGTGAGGGGT  950

seq1  AT  947
      ||
seq2  AT  952