BAC Information

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BAC

Clone NameB6Ng01-255P17
Chromosome1 (Build37)
Map Location 51,967,333 - 52,119,536
singlet/doubletdoublet
Overlap geneMyo1b, EG667010, LOC667014, Stat4
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneLOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255P17.bB6Ng01-255P17.g
ACCGA062058GA062059
length1,1091,069
definitionB6Ng01-255P17.b B6Ng01-255P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,967,333 - 51,968,419)(52,118,473 - 52,119,536)
sequence
gaattccagggattagacctcagggtcctgggcctgaatcgtctagatgg
aaacaaagccaaggaaggagcgggcacccgtgccacacttccttcctctc
ttcccacttggttattttcagcttctgtcggagcagcatgcattgccttg
gcctcgatcgccacagctgtcacagccattttcttcatctcaacaacatc
caccctctaggcaaatccatctgccctgctacactgtccttggagacaca
gtggatttcctttattgctcttgaaaggtgtcaaatacagggtctcactc
acatcaactgggtgcttaacagaatacgaactgatgaagaaggtccccaa
aactgtcacaggtgaccaaaatctgaagagtctgctaagcacctttctcc
ccatcccccaagcactgcttcagtgctggcctgtagaaagatgctcacag
acaagaactcacatatattgcctgtcttggagaattaatgatgtaaagag
accaaagtcgctggtatgccattgaccctggagatcagatagtatcctgg
gctgaaatacttagacaggggctgaaatacttagacagggcataatttac
agtctctaaattcttatcgtaggaactaatatgtatgtatgcatacatac
aatatatatatatgtgtgtgtgtgtgtgtgtctgtgtctgtgtgtctttg
tgtctgtgtgtgtctgtgtgtgtgtgcactataagtggagggatgtgatt
ttttttttttttacctgccccaggaacatttctgagaagtccataaataa
ttcaatgccaatctccattcctgtactttggtggttactcttgggccaag
gtctggtcctttctgtccagcaccactctgttccagcccaaggatacagg
tcacttctgttcccctttttatactgatgtctaaacctagttcacttccc
agtaaggaaaaggacttagttacacaaatcatgttggaatgttgagtttc
ctacgagacctcaataatggtggatggatctcagaggattcagcggtaga
aagacctttgacactttcctctatggtaagatgtctctgtaatagggctt
ctttgccag
gaattcttctgcttactataccaaggttttataaaggtccctgctctctg
cagtggccctccgacatcttacaaaggcccctgctctttgtggtgccctt
tcactgtcctagtgtcaatcaacaagcgattttagttgcaacaaagtcag
atttattggtattttccccagcgattagtatttttaatggtgtgcttaat
aaaccgttcactaagtttctgtcatggggattgttttctatgcctttttg
agtctagaagaacattgggattgtgagttgtaaaagttgtttatggctgt
ggctactgctacaaatttatcatggtgtacactagtcagggcttctattg
gtaaaatgagggtaactttggatattaagagtaagaatacttgtaaccct
gataaactagtgttgctgttaatttcagttcatttggagtaagtgaggaa
cctttctccctacccccttgggtgcgcagttccaacaacattcattgaga
actctgatttgcaatgttggcccagttctgccataaaacctgtgttccca
ccaacatgagaggtttctttctctgctcagttctcttagagatctgtctc
atctttgtgtcatcagtgggactattggaactttatggtaaaccttaatt
gcaagcagaatagggttctgtgcatttccatgcaaatttcagaatcagaa
taataatattcccctacactctgtctccctttctctctgtgtctctctgt
gtgtctctctttcctctctccttctctctctgtctctgtctcttgtctgt
ctctgtctctgtctctgtctctctctctctctctctctctctctctctct
ctgcctgtgtgtgtctctccctctatagttctttttctctgtctctgtca
ttgtctgtctgtctttatctccctcttcctctccctctccctgtcctctg
tctctgtctcttcattgacagcttcatatccactgggattctttagaaaa
atttaaaggagatttggcatgcaatataggttttgttctattccagtctt
ttctcatgcttgtaaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51967333_51968419
seq2: B6Ng01-255P17.b_48_1156

seq1  GAATTCCAGGGATTAGACCTCAGGGTCCTGGGCCTGAATCGTCTAGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGATTAGACCTCAGGGTCCTGGGCCTGAATCGTCTAGATGG  50

seq1  AAACAAAGCCAAGGAAGGAGCGGGCACCCGTGCCACACTTCCTTCCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGCCAAGGAAGGAGCGGGCACCCGTGCCACACTTCCTTCCTCTC  100

seq1  TTCCCACTTGGTTATTTTCAGCTTCTGTCGGAGCAGCATGCATTGCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTTGGTTATTTTCAGCTTCTGTCGGAGCAGCATGCATTGCCTTG  150

seq1  GCCTCGATCGCCACAGCTGTCACAGCCATTTTCTTCATCTCAACAACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGATCGCCACAGCTGTCACAGCCATTTTCTTCATCTCAACAACATC  200

seq1  CACCCTCTAGGCAAATCCATCTGCCCTGCTACACTGTCCTTGGAGACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTAGGCAAATCCATCTGCCCTGCTACACTGTCCTTGGAGACACA  250

seq1  GTGGATTTCCTTTATTGCTCTTGAAAGGTGTCAAATACAGGGTCTCACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTCCTTTATTGCTCTTGAAAGGTGTCAAATACAGGGTCTCACTC  300

seq1  ACATCAACTGGGTGCTTAACAGAATACGAACTGATGAAGAAGGTCCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACTGGGTGCTTAACAGAATACGAACTGATGAAGAAGGTCCCCAA  350

seq1  AACTGTCACAGGTGACCAAAATCTGAAGAGTCTGCTAAGCACCTTTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCACAGGTGACCAAAATCTGAAGAGTCTGCTAAGCACCTTTCTCC  400

seq1  CCATCCCCCAAGCACTGCTTCAGTGCTGGCCTGTAGAAAGATGCTCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCCAAGCACTGCTTCAGTGCTGGCCTGTAGAAAGATGCTCACAG  450

seq1  ACAAGAACTCACATATATTGCCTGTCTTGGAGAATTAATGATGTAAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAACTCACATATATTGCCTGTCTTGGAGAATTAATGATGTAAAGAG  500

seq1  ACCAAAGTCGCTGGTATGCCATTGACCCTGGAGATCAGATAGTATCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTCGCTGGTATGCCATTGACCCTGGAGATCAGATAGTATCCTGG  550

seq1  GCTGAAATACTTAGACAGGGGCTGAAATACTTAGACAGGGCATAATTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATACTTAGACAGGGGCTGAAATACTTAGACAGGGCATAATTTAC  600

seq1  AGTCTCTAAATTCTTATCGTAGGAACTAATATGTATGTATGCATACATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTAAATTCTTATCGTAGGAACTAATATGTATGTATGCATACATAC  650

seq1  AATATATATATATGTGTGTGTGTGTGTGTGTCTGTGTCTGTGTGTCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATATATGTGTGTGTGTGTGTGTGTCTGTGTCTGTGTGTCTTTG  700

seq1  TGTCTGTGTGTGTCTGTGTGTGTGTGCACTATAAGTGGAGGGATGTGA-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTCTGTGTGTGTCTGTGTGTGTGTGCACTATAAGTGGAGGGATGTGATT  750

seq1  TTTTTTTTTTTTACCTGCCCCAGGAACA-TTCTGAGAAGTCCATAAATAA  798
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTTTTTTTTTACCTGCCCCAGGAACATTTCTGAGAAGTCCATAAATAA  800

seq1  TTCAATGCAAATCTCCA-TCCTGTAC-TTGGTGGTTACTCTTGGGCCAAG  846
      |||||||| |||||||| |||||||| |||||||||||||||||||||||
seq2  TTCAATGCCAATCTCCATTCCTGTACTTTGGTGGTTACTCTTGGGCCAAG  850

seq1  GTCTGGTCC-TTCTGCCCAGCACCACTCTGTTCCAGCCCAAGGATACAGG  895
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  GTCTGGTCCTTTCTGTCCAGCACCACTCTGTTCCAGCCCAAGGATACAGG  900

seq1  TCACTTCTGTTCCCC-TTTTATACTGATGTCTAAA-CTAGTTCACTTCCC  943
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  TCACTTCTGTTCCCCTTTTTATACTGATGTCTAAACCTAGTTCACTTCCC  950

seq1  AGTA--GGAAAGGACTAAG-TACACAAATCATG-TGGAATG-TGAG-TTC  987
      ||||  | |||||||| || ||||||||||||| ||||||| |||| |||
seq2  AGTAAGGAAAAGGACTTAGTTACACAAATCATGTTGGAATGTTGAGTTTC  1000

seq1  CCAC-AGAGCTCAGTAATG--TGAT-GATCTCAGAGGATCCAGCGG-AGG  1032
      | || ||| |||| |||||   ||| ||||||||||||| |||||| || 
seq2  CTACGAGACCTCAATAATGGTGGATGGATCTCAGAGGATTCAGCGGTAGA  1050

seq1  AAGACCCTTGACACTT--CTCTATGGAAGAATGTCTTCTGTAA-AGGGCT  1079
      |||||| |||||||||  |||||||| |  ||||| ||||||| ||||||
seq2  AAGACCTTTGACACTTTCCTCTATGGTAAGATGTC-TCTGTAATAGGGCT  1099

seq1  --CTTGCCAG  1087
         |||||||
seq2  TCTTTGCCAG  1109

seq1: chr1_52118473_52119536
seq2: B6Ng01-255P17.g_68_1136 (reverse)

seq1  ACATTTTAACAAGCATGAG-AAAGACTGGATTAGAACAAAA-CTATA-TG  47
      ||||||  ||||||||||| |||||||||| |||||||||| ||||| ||
seq2  ACATTT--ACAAGCATGAGAAAAGACTGGAATAGAACAAAACCTATATTG  48

seq1  CATGCCAAATCTCCTTT-AATTTTTCTAAAGA--TCCAGT-GATATTGAA  93
      ||||||||||||||||| ||||||||||||||   ||||| |||| ||||
seq2  CATGCCAAATCTCCTTTAAATTTTTCTAAAGAATCCCAGTGGATA-TGAA  97

seq1  GCTGTCAATGAAGAGACAGAGACAGA-GACAGGGAGAGGGAGAGGAAGAG  142
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCTGTCAATGAAGAGACAGAGACAGAGGACAGGGAGAGGGAGAGGAAGAG  147

seq1  GGAGATAAAGACAGACAGACAATGACAGAGACAGAGAAAAAGAACTATAG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAAAGACAGACAGACAATGACAGAGACAGAGAAAAAGAACTATAG  197

seq1  AGGGAGAGACACACACAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGACACACACAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  247

seq1  AGAGACAGAGACAGAGACAGAGACAGACAAGAGACAGAGACAGAGAGAGA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGACAGAGACAGAGACAGACAAGAGACAGAGACAGAGAGAGA  297

seq1  AGGAGAGAGGAAAGAGAGACACACAGAGAGACACAGAGAGAAAGGGAGAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAGGAAAGAGAGACACACAGAGAGACACAGAGAGAAAGGGAGAC  347

seq1  AGAGTGTAGGGGAATATTATTATTCTGATTCTGAAATTTGCATGGAAATG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTAGGGGAATATTATTATTCTGATTCTGAAATTTGCATGGAAATG  397

seq1  CACAGAACCCTATTCTGCTTGCAATTAAGGTTTACCATAAAGTTCCAATA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACCCTATTCTGCTTGCAATTAAGGTTTACCATAAAGTTCCAATA  447

seq1  GTCCCACTGATGACACAAAGATGAGACAGATCTCTAAGAGAACTGAGCAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACTGATGACACAAAGATGAGACAGATCTCTAAGAGAACTGAGCAG  497

seq1  AGAAAGAAACCTCTCATGTTGGTGGGAACACAGGTTTTATGGCAGAACTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAACCTCTCATGTTGGTGGGAACACAGGTTTTATGGCAGAACTG  547

seq1  GGCCAACATTGCAAATCAGAGTTCTCAATGAATGTTGTTGGAACTGCGCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACATTGCAAATCAGAGTTCTCAATGAATGTTGTTGGAACTGCGCA  597

seq1  CCCAAGGGGGTAGGGAGAAAGGTTCCTCACTTACTCCAAATGAACTGAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGGGGTAGGGAGAAAGGTTCCTCACTTACTCCAAATGAACTGAAA  647

seq1  TTAACAGCAACACTAGTTTATCAGGGTTACAAGTATTCTTACTCTTAATA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCAACACTAGTTTATCAGGGTTACAAGTATTCTTACTCTTAATA  697

seq1  TCCAAAGTTACCCTCATTTTACCAATAGAAGCCCTGACTAGTGTACACCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGTTACCCTCATTTTACCAATAGAAGCCCTGACTAGTGTACACCA  747

seq1  TGATAAATTTGTAGCAGTAGCCACAGCCATAAACAACTTTTACAACTCAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATTTGTAGCAGTAGCCACAGCCATAAACAACTTTTACAACTCAC  797

seq1  AATCCCAATGTTCTTCTAGACTCAAAAAGGCATAGAAAACAATCCCCATG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAATGTTCTTCTAGACTCAAAAAGGCATAGAAAACAATCCCCATG  847

seq1  ACAGAAACTTAGTGAACGGTTTATTAAGCACACCATTAAAAATACTAATC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACTTAGTGAACGGTTTATTAAGCACACCATTAAAAATACTAATC  897

seq1  GCTGGGGAAAATACCAATAAATCTGACTTTGTTGCAACTAAAATCGCTTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGAAAATACCAATAAATCTGACTTTGTTGCAACTAAAATCGCTTG  947

seq1  TTGATTGACACTAGGACAGTGAAAGGGCACCACAAAGAGCAGGGGCCTTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGACACTAGGACAGTGAAAGGGCACCACAAAGAGCAGGGGCCTTT  997

seq1  GTAAGATGTCGGAGGGCCACTGCAGAGAGCAGGGACCTTTATAAAACCTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATGTCGGAGGGCCACTGCAGAGAGCAGGGACCTTTATAAAACCTT  1047

seq1  GGTATAGTAAGCAGAAGAATTC  1064
      ||||||||||||||||||||||
seq2  GGTATAGTAAGCAGAAGAATTC  1069