BAC Information

Click to search

BAC

Clone NameB6Ng01-256D17
Chromosome1 (Build37)
Map Location 121,741,855 - 121,742,949
singlet/doubletsinglet
Overlap genenone
Upstream geneGli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870
Downstream geneLOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256D17.bB6Ng01-256D17.g
ACCGA062246GA062247
length1,1711,100
definitionB6Ng01-256D17.b B6Ng01-256D17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggtct
tttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttt
atgaggtcccatttatcgattcttgatcttacagcacaagccattgctgt
tctattcaggaatttttcccctgtacccatatcttcgaggcttttcccta
ctttctcctctataagtttcagtgtctctggttttatgtggagttcctta
atccacttagatttgaccttagtacaaggagatagaaatggatcaattca
cattcttctacatgataaccgccagttgtgccagcaccatttgttgtctt
tcttccactggatggttttagctcccttgtcaaagatcaagtgaccatag
gtgtgtggattcatctctgggtcttcaattctgttccattggtctacttg
tctgtcactataccagtaccatgcagttttgatcacaattgctctgtagt
acagttttaggtccggcatggtgattccaccagaggttcttttatccttg
agaagagtttttgctatcctcggttttttgttattccagatgaatctgcc
gactgccctttctaattcattgaagaattgagttggaattttgatgggga
ttgcattgaatctgtagattgcttttggcaagatagccatttttacaatg
ttgatcctgccaatccatgagcatgggagatctttccatcttctgagatc
ttctttaatttctttctttagagacttgaagttcttatcatacagatctt
tcacttccttagagtcatgccaaggtattttatattatttgtgactattg
agaagggtgttgtttccctaattctttctcagcctgttatcctttgtgta
cagaaaggccattgacttgtttgagttaattttatatcagctactcattg
aagctgtttatcaggctttaggagttctctggtgaattttttaggtcact
tatatattactatccatatcatctgcaaagtgaattttgaccttctcgtt
ccagtttgtattcccccttga
gaattccaggtcagtcggggatacagagggagaccctgtctgaaaacaca
actagaaactactaagaggcagttggtcctgaggagctggttctatttgg
taaagtgtttgtcatgaaagcgtgaagacctgagctcagtctccagaacc
caccaaaaagctggtggtgtgtgcctgtaatccgagctctggaggtctgg
agacattaatatctcccagactcaacgacttgccagcctagcctacttgg
caagcctcaagtcccagtgagagatcttgtctcacaaacagagttgacag
ctgttgtaaggaaaaacacccaaatgctggcctctggactctacacacat
atgcaaacatgttcatgtacacacacacacacacacacacacacacacga
gtgcatatgaactcatcctattgtacattgtacccccaacacccatgtaa
attctggcttggtgtggaggcccacctgtaattccatctctggaaagcag
aggaagaaccctcagatatactatccctaatacgccaactctgggtccaa
tggaaagaccctgatgtacctaagagacaatcctctgtgcgtatttgtga
gggagtaactatgccggattaattaagttgtaaaaacttaccctaactat
atgtggcaccactccatgggctgctgtgccaaactgaataaaaaggaggg
aacaagctgagctttgggttgtgcggggtcaggataagctcctcatctca
aagtcttcaacttaattacacctacacagtccttttggctgtgtaacgca
cataatcacaggttccgatgattaggcacccgagtggccattgttctgtg
tgtcaggtcttcaccactattcagtctgggatcattctagtttatacatt
taaatatttgagagggttaatgacttcgaaaatgaacgttgtaaatttat
ttttttaataatgtgaatgtatctgtgtgtgggtctgtgcacaccagtgc
agcctgtggagtccagagaggtaccatatctttctgaagttggagtgaac
gggaaagtttgtgaggaagcttggatgtgactggggaaatgaacttggtc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_121741855_121742949
seq2: B6Ng01-256D17.g_64_1163

seq1  GAATTCCAGGTCAGTCGGGGATACAGAGGGAGACCCTGTCTGAAAACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAGTCGGGGATACAGAGGGAGACCCTGTCTGAAAACACA  50

seq1  ACTAGAAACTACTAAGAGGCAGTTGGTCCTGAGGAGCTGGTTCTATTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAACTACTAAGAGGCAGTTGGTCCTGAGGAGCTGGTTCTATTTGG  100

seq1  TAAAGTGTTTGTCATGAAAGCGTGAAGACCTGAGCTCAGTCTCCAGAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGTTTGTCATGAAAGCGTGAAGACCTGAGCTCAGTCTCCAGAACC  150

seq1  CACCAAAAAGCTGGTGGTGTGTGCCTGTAATCCGAGCTCTGGAGGTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAAAGCTGGTGGTGTGTGCCTGTAATCCGAGCTCTGGAGGTCTGG  200

seq1  AGACATTAATATCTCCCAGACTCAACGACTTGCCAGCCTAGCCTACTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTAATATCTCCCAGACTCAACGACTTGCCAGCCTAGCCTACTTGG  250

seq1  CAAGCCTCAAGTCCCAGTGAGAGATCTTGTCTCACAAACAGAGTTGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTCAAGTCCCAGTGAGAGATCTTGTCTCACAAACAGAGTTGACAG  300

seq1  CTGTTGTAAGGAAAAACACCCAAATGCTGGCCTCTGGACTCTACACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTAAGGAAAAACACCCAAATGCTGGCCTCTGGACTCTACACACAT  350

seq1  ATGCAAACATGTTCATGTACACACACACACACACACACACACACACACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACATGTTCATGTACACACACACACACACACACACACACACACGA  400

seq1  GTGCATATGAACTCATCCTATTGTACATTGTACCCCCAACACCCATGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATATGAACTCATCCTATTGTACATTGTACCCCCAACACCCATGTAA  450

seq1  ATTCTGGCTTGGTGTGGAGGCCCACCTGTAATTCCATCTCTGGAAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGCTTGGTGTGGAGGCCCACCTGTAATTCCATCTCTGGAAAGCAG  500

seq1  AGGAAGAACCCTCAGATATACTATCCCTAATACGCCAACTCTGGGTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAACCCTCAGATATACTATCCCTAATACGCCAACTCTGGGTCCAA  550

seq1  TGGAAAGACCCTGATGTACCTAAGAGACAATCCTCTGTGCGTATTTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGACCCTGATGTACCTAAGAGACAATCCTCTGTGCGTATTTGTGA  600

seq1  GGGAGTAACTATGCCGGATTAATTAAGTTGTAAAAACTTACCCTAACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTAACTATGCCGGATTAATTAAGTTGTAAAAACTTACCCTAACTAT  650

seq1  ATGTGGCACCACTCCATGGGCTGCTGTGCCAAACTGAATAAAAAGGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCACCACTCCATGGGCTGCTGTGCCAAACTGAATAAAAAGGAGGG  700

seq1  AACAAGCTGAGCTTTGGGTTGTGCGGGGTCAGGATAAGCTCCTCATCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCTGAGCTTTGGGTTGTGCGGGGTCAGGATAAGCTCCTCATCTCA  750

seq1  AAGTCTTCAACTTAATTACACCTACACAGTCCTTTTGGCTGTGTAACGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCAACTTAATTACACCTACACAGTCCTTTTGGCTGTGTAACGCA  800

seq1  CATAATCACAGGTTCCGATGATTAGGCACCCGAGTGGCCATTGTTCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCACAGGTTCCGATGATTAGGCACCCGAGTGGCCATTGTTCTGTG  850

seq1  TGTCAGGGTCTTCACCACTATTCAGTCTGGGATCATTCTAGTTTATACAT  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCA-GGTCTTCACCACTATTCAGTCTGGGATCATTCTAGTTTATACAT  899

seq1  TTAAATATTTGAGAGGGTTAATGACTTCGAAAATGAACGTTGTAAATTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATTTGAGAGGGTTAATGACTTCGAAAATGAACGTTGTAAATTTA  949

seq1  -TTTTTTAATAATGTGAATGTATCTGTGTGTGGGTCTGTGCACACCAGTG  999
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATAATGTGAATGTATCTGTGTGTGGGTCTGTGCACACCAGTG  999

seq1  CAGCCTGTGGAGTCCAGAAGAGGTACCATATC-TTCTGGAGTTGGAGTG-  1047
      ||||||||||||||||| |||||||||||||| ||||| |||||||||| 
seq2  CAGCCTGTGGAGTCCAG-AGAGGTACCATATCTTTCTGAAGTTGGAGTGA  1048

seq1  ACGGGAA--GTTGTGAGG-AGC-TGGATGTGGACT-GGGAAATGAACTTG  1092
      |||||||   |||||||| ||| ||||||| |||| ||||||||||||||
seq2  ACGGGAAAGTTTGTGAGGAAGCTTGGATGT-GACTGGGGAAATGAACTTG  1097

seq1  GTC  1095
      |||
seq2  GTC  1100