BAC Information

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BAC

Clone NameB6Ng01-256G02
Chromosome1 (Build37)
Map Location 166,414,372 - 166,533,652
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
Downstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256G02.bB6Ng01-256G02.g
ACCGA062354GA062355
length1,1641,058
definitionB6Ng01-256G02.b B6Ng01-256G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,532,483 - 166,533,652)(166,414,372 - 166,415,437)
sequence
gaattctttctatctgaataaaaatactgttgatccagaaaactggtact
gtatacttgcagtatatatgttacataaagcttcggtgtatctaatgacc
aataggatcttagattcaataccatccagaaagttcattttgttcctcta
ctgcctattaataagtccagctgagagtttcaggttttaggattactcaa
gcaaagcatttaccacaaacctgctagaccagagcccggcttaagtcctg
tatcctagcttgctttctatggctgtgataaacagcatgaacaaaggaac
ttggacaggacagagtttatttggcctcctgatcacagttcactgcagag
ggaagttggatcaggagcagacgcaggaatctgaaggcacgaactgaaga
agaagccatggagagacactcttgagtgccttgttcccctgtatagccca
ggaccaccggctcaggggtgatccaattagaacatctaggatttggtctg
aaccaagtccctaaaaaagcaacatggaacagaaagaagcagaacataga
cctggattgaaatctagtaaagttacaaaatgagaacgctaattacaaag
cagaagtaaatggttaagagtgagcagatagaacatggaggaatgccagg
agcctgactagtcctccaatgttgccttaactagtctacctggaacactc
cttctatttgtggcttctgggtgtaactggaaatcatctgccatgctgca
gttagctgaaggaagcatgcctgcttaactagataaggcaaaagtgaagc
gttagaaccacggtcagacttaagtgctgccgtattgggagagaaagcat
tctgccctaccccacatgggaaacaaggaccaacaaggaagttacaagca
aacaggttctgagccccaaatgcgaggcctccagtggaacttttgggggg
gtgtttgtttgtttgttgttttgtttgttttttgtttttcgagacaggtt
tctctgtgttgccctggctgtcctggaactcactctgtagaccaggcttg
gcctcgacctcagaaatccactgcttctgtctcccaagtgcctggattga
tgcatgcgccaccatacacttgtccgatgaacttttgaatctccatctag
cctaacttcaagag
gaattcctgattctccttctccttcctctacctccagaatgctgggataa
cagccattcactcctccatctagtttatgcacactggctttggagccaag
gactgtacataccaggcaagcactctaccagctgagctatgtccccagct
gatcagctcaattccttaagcatttgagctgatctctttcaaaaggtcct
tagagcggctgagcaggtggctgcgctccataaaactggaaaaggaaaag
catagccaagagcggggctgccttaatgtgaatgactttgagaatgtgac
caatacaatacaaaagtatggcaagcaagcatcacttccggggctgtaac
ggcttagccagtgcttgccatacaagcgtgaggacctctgtttggcttct
taagcacccacacaaaaagttggtatttgtctataatagcagcgctggga
agatggacccaggtgactctgtggagcttgctggccagtcagtttggcca
agtcactgaactgcaggttcagggagagagactctgtctcagaaaataag
gtagacagacacggaggaaaacccttgactgtggtctctgccctctgcat
gtataagccgttatatgtgtatacacaccggttttagtgctttctgattt
aatctgaaagctgaagcgttgtgaatgttaaagacagaaatgtaggcaca
ctgaagtgattcctttccttgcagaattttattggcatcatagactccat
gattcaatttacacatgagttggaccaagttttcagaacccattaaagtc
atatagtatacgaatctctttatactatattactgtattcccaattctaa
tgatcttttccttctcccattattaactcacattagattaaactttccct
tcccgagtacagtgattttacttgcatgtgagtgtgtgcatcactcgaac
acatggtgccagagccaggagatggcattagatcctctgaaacggatgta
tgagctgccatgctgtactggtactgacttagatcctctggaaggcagac
agtgctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166532483_166533652
seq2: B6Ng01-256G02.b_46_1209 (reverse)

seq1  CTCTTTAAAGTTAG--TAGATGAAGATTCAAAAGTTCCACTGGGCCAGGT  48
      ||| || |||||||  |||||| ||||||||||||||   | || || ||
seq2  CTC-TTGAAGTTAGGCTAGATGGAGATTCAAAAGTTC--ATCGGACAAGT  47

seq1  G-ATGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGACAGAGGCAGGT  97
      | ||||||||||||| | | |||||  |||||||||||||||| ||| ||
seq2  GTATGGTGGCGCATG-CATCAATCCAGGCACTTGGGAGACAGAAGCA-GT  95

seq1  GGATTTCTGAGTTCGAGGCC-AGCCTGGTCTACAGAGTGAGTTCCAGGAC  146
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  GGATTTCTGAGGTCGAGGCCAAGCCTGGTCTACAGAGTGAGTTCCAGGAC  145

seq1  AGCCAGGGCAACACAGAGAAACCTTGTCTCGAAAAAACAAAAAACAAAAC  196
      ||||||||||||||||||||||| ||||||| ||||||||||||| ||||
seq2  AGCCAGGGCAACACAGAGAAACC-TGTCTCG-AAAAACAAAAAAC-AAAC  192

seq1  AAAAACAAACAAACAAACAAACAACCCCCCAAAAGTTCCACTGGAGGCCT  246
      ||||   |||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAA--CAACAAACAAACAAACACCCCCCCAAAAGTTCCACTGGAGGCCT  240

seq1  CGCATTTGGGGCTCAGAACCTGTTTGCTTGTAACTTCCTTGTTGGTCCTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTTGGGGCTCAGAACCTGTTTGCTTGTAACTTCCTTGTTGGTCCTT  290

seq1  GTTTCCCATGTGGGGTAGGGCAGAATGCTTTCTCTCCCAATACGGCAGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCATGTGGGGTAGGGCAGAATGCTTTCTCTCCCAATACGGCAGCA  340

seq1  CTTAAGTCTGACCGTGGTTCTAACGCTTCACTTTTGCCTTATCTAGTTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTCTGACCGTGGTTCTAACGCTTCACTTTTGCCTTATCTAGTTAA  390

seq1  GCAGGCATGCTTCCTTCAGCTAACTGCAGCATGGCAGATGATTTCCAGTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCATGCTTCCTTCAGCTAACTGCAGCATGGCAGATGATTTCCAGTT  440

seq1  ACACCCAGAAGCCACAAATAGAAGGAGTGTTCCAGGTAGACTAGTTAAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAGAAGCCACAAATAGAAGGAGTGTTCCAGGTAGACTAGTTAAGG  490

seq1  CAACATTGGAGGACTAGTCAGGCTCCTGGCATTCCTCCATGTTCTATCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTGGAGGACTAGTCAGGCTCCTGGCATTCCTCCATGTTCTATCTG  540

seq1  CTCACTCTTAACCATTTACTTCTGCTTTGTAATTAGCGTTCTCATTTTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTTAACCATTTACTTCTGCTTTGTAATTAGCGTTCTCATTTTGT  590

seq1  AACTTTACTAGATTTCAATCCAGGTCTATGTTCTGCTTCTTTCTGTTCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTACTAGATTTCAATCCAGGTCTATGTTCTGCTTCTTTCTGTTCCA  640

seq1  TGTTGCTTTTTTAGGGACTTGGTTCAGACCAAATCCTAGATGTTCTAATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTTTTTAGGGACTTGGTTCAGACCAAATCCTAGATGTTCTAATT  690

seq1  GGATCACCCCTGAGCCGGTGGTCCTGGGCTATACAGGGGAACAAGGCACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACCCCTGAGCCGGTGGTCCTGGGCTATACAGGGGAACAAGGCACT  740

seq1  CAAGAGTGTCTCTCCATGGCTTCTTCTTCAGTTCGTGCCTTCAGATTCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTGTCTCTCCATGGCTTCTTCTTCAGTTCGTGCCTTCAGATTCCT  790

seq1  GCGTCTGCTCCTGATCCAACTTCCCTCTGCAGTGAACTGTGATCAGGAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTGCTCCTGATCCAACTTCCCTCTGCAGTGAACTGTGATCAGGAGG  840

seq1  CCAAATAAACTCTGTCCTGTCCAAGTTCCTTTGTTCATGCTGTTTATCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAAACTCTGTCCTGTCCAAGTTCCTTTGTTCATGCTGTTTATCAC  890

seq1  AGCCATAGAAAGCAAGCTAGGATACAGGACTTAAGCCGGGCTCTGGTCTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAGAAAGCAAGCTAGGATACAGGACTTAAGCCGGGCTCTGGTCTA  940

seq1  GCAGGTTTGTGGTAAATGCTTTGCTTGAGTAATCCTAAAACCTGAAACTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTTGTGGTAAATGCTTTGCTTGAGTAATCCTAAAACCTGAAACTC  990

seq1  TCAGCTGGACTTATTAATAGGCAGTAGAGGAACAAAATGAACTTTCTGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGACTTATTAATAGGCAGTAGAGGAACAAAATGAACTTTCTGGA  1040

seq1  TGGTATTGAATCTAAGATCCTATTGGTCATTAGATACACCGAAGCTTTAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTGAATCTAAGATCCTATTGGTCATTAGATACACCGAAGCTTTAT  1090

seq1  GTAACATATATACTGCAAGTATACAGTACCAGTTTTCTGGATCAACAGTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATATATACTGCAAGTATACAGTACCAGTTTTCTGGATCAACAGTA  1140

seq1  TTTTTATTCAGATAGAAAGAATTC  1170
      ||||||||||||||||||||||||
seq2  TTTTTATTCAGATAGAAAGAATTC  1164

seq1: chr1_166414372_166415437
seq2: B6Ng01-256G02.g_66_1123

seq1  GAATTCCTGATTCTCCTTCTCCTTCCTCTACCTCCAGAATGCTGGGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATTCTCCTTCTCCTTCCTCTACCTCCAGAATGCTGGGATAA  50

seq1  CAGCCATTCACTCCTCCATCTAGTTTATGCACACTGGCTTTGGAGCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTCACTCCTCCATCTAGTTTATGCACACTGGCTTTGGAGCCAAG  100

seq1  GACTGTACATACCAGGCAAGCACTCTACCAGCTGAGCTATGTCCCCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTACATACCAGGCAAGCACTCTACCAGCTGAGCTATGTCCCCAGCT  150

seq1  GATCAGCTCAATTCCTTAAGCATTTGAGCTGATCTCTTTCAAAAGGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCTCAATTCCTTAAGCATTTGAGCTGATCTCTTTCAAAAGGTCCT  200

seq1  TAGAGCGGCTGAGCAGGTGGCTGCGCTCCATAAAACTGGAAAAGGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCGGCTGAGCAGGTGGCTGCGCTCCATAAAACTGGAAAAGGAAAAG  250

seq1  CATAGCCAAGAGCGGGGCTGCCTTAATGTGAATGACTTTGAGAATGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCAAGAGCGGGGCTGCCTTAATGTGAATGACTTTGAGAATGTGAC  300

seq1  CAATACAATACAAAAGTATGGCAAGCAAGCATCACTTCCGGGGCTGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAATACAAAAGTATGGCAAGCAAGCATCACTTCCGGGGCTGTAAC  350

seq1  GGCTTAGCCAGTGCTTGCCATACAAGCGTGAGGACCTCTGTTTGGCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGCCAGTGCTTGCCATACAAGCGTGAGGACCTCTGTTTGGCTTCT  400

seq1  TAAGCACCCACACAAAAAGTTGGTATTTGTCTATAATAGCAGCGCTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACCCACACAAAAAGTTGGTATTTGTCTATAATAGCAGCGCTGGGA  450

seq1  AGATGGACCCAGGTGACTCTGTGGAGCTTGCTGGCCAGTCAGTTTGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACCCAGGTGACTCTGTGGAGCTTGCTGGCCAGTCAGTTTGGCCA  500

seq1  AGTCACTGAACTGCAGGTTCAGGGAGAGAGACTCTGTCTCAGAAAATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGAACTGCAGGTTCAGGGAGAGAGACTCTGTCTCAGAAAATAAG  550

seq1  GTAGACAGACACGGAGGAAAACCCTTGACTGTGGTCTCTGCCCTCTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAGACACGGAGGAAAACCCTTGACTGTGGTCTCTGCCCTCTGCAT  600

seq1  GTATAAGCCGTTATATGTGTATACACACCGGTTTTAGTGCTTTCTGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGCCGTTATATGTGTATACACACCGGTTTTAGTGCTTTCTGATTT  650

seq1  AATCTGAAAGCTGAAAGCGTTGTGAATGTTAAAGACAGAAATGTAGGCAC  700
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATCTGAAAGCTG-AAGCGTTGTGAATGTTAAAGACAGAAATGTAGGCAC  699

seq1  ACTGAAGTGATTCCTTTCCTTGCAGAATTTTATTGGCATCATAGACTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTGATTCCTTTCCTTGCAGAATTTTATTGGCATCATAGACTCCA  749

seq1  TGATTCAATTTACACATGAGTTGGACCAAGTTTTCAGAACCCATTAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAATTTACACATGAGTTGGACCAAGTTTTCAGAACCCATTAAAGT  799

seq1  CATATAGTATACGAATCTCTTTATACTATATTACTGTATTCCCAATTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGTATACGAATCTCTTTATACTATATTACTGTATTCCCAATTCTA  849

seq1  ATGATCTTTTCCTTCTCCCATTATTAACTCACATTAGATTAAACTTT-CC  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGATCTTTTCCTTCTCCCATTATTAACTCACATTAGATTAAACTTTCCC  899

seq1  TTCCCGAGTACAGGTGATTTTACTTGCATGTGAGTGTGTGCATCACTCGA  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCCCGAGTACA-GTGATTTTACTTGCATGTGAGTGTGTGCATCACTCGA  948

seq1  ACACATGGTGCCAGAAGCCAGGAGATGGCATTAGATCCTCTGAAAACGGA  999
      |||||||||||||| ||||||||||||||||||||||||||| |||||| 
seq2  ACACATGGTGCCAG-AGCCAGGAGATGGCATTAGATCCTCTG-AAACGG-  995

seq1  AGGTATGAGCTGCCATGCTGGTACTGGGAACTGAACCTAGATCCTCTGGA  1049
      | ||||||||||||||||| ||||| || |||| || |||||||||||||
seq2  ATGTATGAGCTGCCATGCT-GTACT-GGTACTG-ACTTAGATCCTCTGGA  1042

seq1  AGAGCAGACAGTGCTCT  1066
      || ||||||||||||||
seq2  AG-GCAGACAGTGCTCT  1058