BAC Information

Click to search

BAC

Clone NameB6Ng01-257D10
Chromosome1 (Build37)
Map Location 193,086,456 - 193,174,034
singlet/doubletdoublet
Overlap geneNenf, 2310028N02Rik
Upstream geneLOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3
Downstream genePpp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257D10.bB6Ng01-257D10.g
ACCGA062970GA062971
length1,1131,134
definitionB6Ng01-257D10.b B6Ng01-257D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(193,172,783 - 193,174,034)(193,086,456 - 193,087,600)
sequence
gaattctgcgtacagggcacatcagtccgctttaaagaaaaaaagcccta
agggaaagaagaagccttaactatttagtgaccaaataggaggaacctct
ccaaggcactaggcagctctgcaagatgtccgttaataatttaagtactt
aaataagtttcaggttattcactgggcgtttccctcccgggccgggtttg
agcctccagtgcgatggacgggactgtccttccctgcagggtcccttcaa
gtgagttcaggattgctggtgtctcgctctgtcggagtgccgtggcacgg
gcgcttcagcttatgtggtttgtcgcctggcctctccgtttaaggtatcg
tttcctgattttgatcatccatttcacgcttagtttggcaaactctgctg
ctttaaacaacgccaggaaagccccgcagagcagggcgatggtgttccaa
ggattggctgtgattatctgtggggcagacaagaccgggattgctggttg
gcggcagccttgactctgtctgtctcagactttggagccaacagagacgc
atgctgcttctgccctaccactgctcagaagggaactgtgagcccctcca
cgtaaaaggattccgcctcaaaaatctttgtgtaaataagacattcatac
tgtgcttaatctaacaagtgacccaaagaaatttccctaaactatacctc
agcctcaaggttggtccctctgtctgatctcagctacctcagccttcagc
tgtcccctcacactcatcctggggactctgccaccaggccaacgcacctt
ccttctttcctgctctgggatgttctcctatccggacttaatccgactca
gcactctctctatccactcggccaaaaccctttttccttcaacaaagttg
tttatcccccagagccctgtgacagctgttcactgtcgggtatgatgtaa
agaaatagcttggcccccattaaataccctgttatctctctgcagtgcta
tagatggactgcaggccttgtgcatgctagatagtgctctcacacagtct
accccctctcaactcaagcaggtctaacatttcaactcccctgtgtgaat
gaaagaaagagaa
gaattcttaggaagatgcttgaggcattggcaaccagagtctgggtctgt
gagtccttgtctcaaaagatacacatacccatctatacctaactgcataa
agttaaaaatgaatacataaaaagagaggatacttccataactatatata
tatatatatatatatagttatctgatatatatatatatcagttgttatat
attatataaattatacattatatattatttatattatacatattatatac
acatatataaaatataatacatactaatacatttatattttatatttgaa
acatatttaaataatatataagcatatgtattatttatattttatatatt
aaaatatatttttatatatgtaaatacactgtagctgtcttcagacacac
cagaagaggaatcagatcctattacagatggttgtgagtcaccattgtgc
tttctggaaattgaactcaggacctctggaagagcagtcagggctcttaa
ccactgagccatctctccagccctccatgacaattttaactcagtcctca
tggagaacttgtgagagagggtcagtaggttcttatccctgaggaagagg
aagtccagggagcttggacccaggcatctggctgagaattagcagccgct
acccagcgatagcagaaacagcattgtaactgtcttcagagagaaagatg
gaggcccactggagcccagctccctccacagtttctcctgactgggctca
tccatggcagggaggcccaacagggcatccaaggacacacctgcagctga
aatgccaaacttctaaagaaaagctgctttatttctggaggtcttcaaag
tcacccacaccttactaccaatccccatcttccacccaccactgggatac
caaagaagagttcaaagtcacagccatagcagtctcggatgaaaggctcc
attaatctctctgagcgcaagccaccagactctgaaatgatttcaaacca
gtaactgacttagtccttggtgggagccatagtgaaactgcagccactcc
ctctgtgtttgccatgtctctgtcccatgcactgtgattctgatgaccct
tggcaccactgctgtgtcactgatagtaggactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_193172783_193174034
seq2: B6Ng01-257D10.b_48_1160 (reverse)

seq1  TTCTCTTTCTCCCTCCTTCACTCCCCTCCCCCCTTTCTTTTCTCTCTTCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCCCCTCCCCTCCCCTCCCCTCTCTTCTCTTTTCTTTTCTTTCACAC  150
                                 ||||||||   |||| |||||||
seq2  ---------------------------TTCTCTTT--CTTTCATTCACAC  21

seq1  AGGGGAGTTTGAAAATGTAAGAACCCTGCCTGAGTTTGGAGAGGGGGTAG  200
      |||||||||   |||||| |||  ||||| ||||||  ||||||||||||
seq2  AGGGGAGTT--GAAATGTTAGA--CCTGCTTGAGTT--GAGAGGGGGTAG  65

seq1  ACTGTGTGGAAGAGCACTTATCTAGCATGCACAAGGCCTGCAGTCCATCT  250
      ||||||||  ||||||| ||||||||||||||||||||||||||||||||
seq2  ACTGTGTG--AGAGCAC-TATCTAGCATGCACAAGGCCTGCAGTCCATCT  112

seq1  ATTAGCACTGCAGAGAGATAACAGGGTATTTAATGGGGGCCAAGCTATTT  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TAGCACTGCAGAGAGATAACAGGGTATTTAATGGGGGCCAAGCTATTT  161

seq1  CTTTACATCATACCCGACAGTGAACAGCTGTCACAGGGCTCTGGGGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATCATACCCGACAGTGAACAGCTGTCACAGGGCTCTGGGGGATA  211

seq1  AACAACTTTGTTGAAGGAAAAAGGGTTTTGGCCGAGTGGATAGAGAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTTGTTGAAGGAAAAAGGGTTTTGGCCGAGTGGATAGAGAGAGT  261

seq1  GCTGAGTCGGATTAAGTCCGGATAGGAGAACATCCCAGAGCAGGAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTCGGATTAAGTCCGGATAGGAGAACATCCCAGAGCAGGAAAGAA  311

seq1  GGAAGGTGCGTTGGCCTGGTGGCAGAGTCCCCAGGATGAGTGTGAGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGCGTTGGCCTGGTGGCAGAGTCCCCAGGATGAGTGTGAGGGGA  361

seq1  CAGCTGAAGGCTGAGGTAGCTGAGATCAGACAGAGGGACCAACCTTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAAGGCTGAGGTAGCTGAGATCAGACAGAGGGACCAACCTTGAGG  411

seq1  CTGAGGTATAGTTTAGGGAAATTTCTTTGGGTCACTTGTTAGATTAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTATAGTTTAGGGAAATTTCTTTGGGTCACTTGTTAGATTAAGCA  461

seq1  CAGTATGAATGTCTTATTTACACAAAGATTTTTGAGGCGGAATCCTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGAATGTCTTATTTACACAAAGATTTTTGAGGCGGAATCCTTTTA  511

seq1  CGTGGAGGGGCTCACAGTTCCCTTCTGAGCAGTGGTAGGGCAGAAGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAGGGGCTCACAGTTCCCTTCTGAGCAGTGGTAGGGCAGAAGCAGC  561

seq1  ATGCGTCTCTGTTGGCTCCAAAGTCTGAGACAGACAGAGTCAAGGCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTCTCTGTTGGCTCCAAAGTCTGAGACAGACAGAGTCAAGGCTGCC  611

seq1  GCCAACCAGCAATCCCGGTCTTGTCTGCCCCACAGATAATCACAGCCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCAGCAATCCCGGTCTTGTCTGCCCCACAGATAATCACAGCCAAT  661

seq1  CCTTGGAACACCATCGCCCTGCTCTGCGGGGCTTTCCTGGCGTTGTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAACACCATCGCCCTGCTCTGCGGGGCTTTCCTGGCGTTGTTTAA  711

seq1  AGCAGCAGAGTTTGCCAAACTAAGCGTGAAATGGATGATCAAAATCAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGAGTTTGCCAAACTAAGCGTGAAATGGATGATCAAAATCAGGA  761

seq1  AACGATACCTTAAACGGAGAGGCCAGGCGACAAACCACATAAGCTGAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATACCTTAAACGGAGAGGCCAGGCGACAAACCACATAAGCTGAAGC  811

seq1  GCCCGTGCCACGGCACTCCGACAGAGCGAGACACCAGCAATCCTGAACTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTGCCACGGCACTCCGACAGAGCGAGACACCAGCAATCCTGAACTC  861

seq1  ACTTGAAGGGACCCTGCAGGGAAGGACAGTCCCGTCCATCGCACTGGAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGGGACCCTGCAGGGAAGGACAGTCCCGTCCATCGCACTGGAGG  911

seq1  CTCAAACCCGGCCCGGGAGGGAAACGCCCAGTGAATAACCTGAAACTTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACCCGGCCCGGGAGGGAAACGCCCAGTGAATAACCTGAAACTTAT  961

seq1  TTAAGTACTTAAATTATTAACGGACATCTTGCAGAGCTGCCTAGTGCCTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTACTTAAATTATTAACGGACATCTTGCAGAGCTGCCTAGTGCCTT  1011

seq1  GGAGAGGTTCCTCCTATTTGGTCACTAAATAGTTAAGGCTTCTTCTTTCC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTTCCTCCTATTTGGTCACTAAATAGTTAAGGCTTCTTCTTTCC  1061

seq1  CTTAGGGCTTTTTTTCTTTAAAGCGGACTGATGTGCCCTGTACGCAGAAT  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGCTTTTTTTCTTTAAAGCGGACTGATGTGCCCTGTACGCAGAAT  1111

seq1  TC  1252
      ||
seq2  TC  1113

seq1: chr1_193086456_193087600
seq2: B6Ng01-257D10.g_65_1198

seq1  GAATTCTTAGGAAGATGCTTGAGGCATTGGCAACCAGAGTCTGGGTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGAAGATGCTTGAGGCATTGGCAACCAGAGTCTGGGTCTGT  50

seq1  GAGTCCTTGTCTCAAAAGATACACATACCCATCTATACCTAACTGCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTTGTCTCAAAAGATACACATACCCATCTATACCTAACTGCATAA  100

seq1  AGTTAAAAATGAATACATAAAAAGAGAGGATACTTCCATAACTATATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAATGAATACATAAAAAGAGAGGATACTTCCATAACTATATATA  150

seq1  TATATATATATATATAGTTATCTGATATATATATATATCAGTTGTTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATAGTTATCTGATATATATATATATCAGTTGTTATAT  200

seq1  ATTATATAAATTATACATTATATATTATTTATATTATACATATTATATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAAATTATACATTATATATTATTTATATTATACATATTATATAC  250

seq1  ACATATATAAAATATAATACATACTAATACATTTATATTTTATATTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATAAAATATAATACATACTAATACATTTATATTTTATATTTGAA  300

seq1  ACATATTTAAATAATATATAAGCATATGTATTATTTATATTTTATATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTAAATAATATATAAGCATATGTATTATTTATATTTTATATATT  350

seq1  AAAATATATTTTTATATATGTAAATACACTGTAGCTGTCTTCAGACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATTTTTATATATGTAAATACACTGTAGCTGTCTTCAGACACAC  400

seq1  CAGAAGAGGAATCAGATCCTATTACAGATGGTTGTGAGTCACCATTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGAATCAGATCCTATTACAGATGGTTGTGAGTCACCATTGTGC  450

seq1  TTTCTGGAAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGGGCTCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGGGCTCTTAA  500

seq1  CCACTGAGCCATCTCTCCAGCCCTCCATGACAATTTTAACTCAGTCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGCCATCTCTCCAGCCCTCCATGACAATTTTAACTCAGTCCTCA  550

seq1  TGGAGAACTTGTGAGAGAGGGTCAGTAGGTTCTTATCCCTGAGGAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAACTTGTGAGAGAGGGTCAGTAGGTTCTTATCCCTGAGGAAGAGG  600

seq1  AAGTCCAGGGAGCTTGGACCCAGGCATCTGGCTGAGAATTAGCAGCCGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAGGGAGCTTGGACCCAGGCATCTGGCTGAGAATTAGCAGCCGCT  650

seq1  ACCCAGCGATAGCAGAAACAGCATTGTAACTGTCTTCAGAGAGAAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCGATAGCAGAAACAGCATTGTAACTGTCTTCAGAGAGAAAGATG  700

seq1  GAGGCCCACTGGAGCCCAGCTCCCTCCACAGTTTCTCCTGACTGGGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCACTGGAGCCCAGCTCCCTCCACAGTTTCTCCTGACTGGGCTCA  750

seq1  TCCATGGCAGGGAGGCCCAACAGGGCATCCAAGGACACACCTGCAGCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCAGGGAGGCCCAACAGGGCATCCAAGGACACACCTGCAGCTGA  800

seq1  AATGCCAAACTTCTAAAGAAAAGCTGCTTTATTTCTGGAGGTCTTCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAAACTTCTAAAGAAAAGCTGCTTTATTTCTGGAGGTCTTCAAAG  850

seq1  TCACCCACACCTTACTACCAATCCCCATCTTCCACCCACCACTGGGATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACACCTTACTACCAATCCCCATCTTCCACCCACCACTGGGATAC  900

seq1  CAAAGAAGAGTTCAAAGTCACAGCCATAGCAGTCTCGGATG-AAGGCTCC  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAAAGAAGAGTTCAAAGTCACAGCCATAGCAGTCTCGGATGAAAGGCTCC  950

seq1  ATTAATCTCTTCTGAGCGCAAGCCACCAGACTCTTGAAATGATTTCAAAA  999
      ||||||||| ||||||||||||||||||||||| |||||||||||| |||
seq2  ATTAATCTC-TCTGAGCGCAAGCCACCAGACTC-TGAAATGATTTC-AAA  997

seq1  CCAGTAACTGACTTAGTCCTTTGTGGGAGCCATAGTGAAACCTGGCAGCC  1049
      ||||||||||||||||||||| |||||||||||||||||||   ||||||
seq2  CCAGTAACTGACTTAGTCCTTGGTGGGAGCCATAGTGAAAC--TGCAGCC  1045

seq1  ACTCCCTTCTGTGTTTGCCATGTCTCTGTTCCCCATGCACTGTGATTTCT  1099
      |||||| ||||||||||||||||||||||  |||||||||||||| ||||
seq2  ACTCCC-TCTGTGTTTGCCATGTCTCTGT--CCCATGCACTGTGA-TTCT  1091

seq1  GAGTGACCCTGGGCACCCACTGCTGTGTCACTGATAGTAAGGACTT  1145
      || ||||||| |||| |||||||||||||||||||||| |||||||
seq2  GA-TGACCCTTGGCA-CCACTGCTGTGTCACTGATAGT-AGGACTT  1134