BAC Information

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BAC

Clone NameB6Ng01-257F06
Chromosome1 (Build37)
Map Location 131,721,559 - 131,827,997
singlet/doubletdoublet
Overlap geneThsd7b
Upstream geneLOC100042732, LOC100042745, LOC100042740
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257F06.bB6Ng01-257F06.g
ACCGA063056GA063057
length1,0931,065
definitionB6Ng01-257F06.b B6Ng01-257F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,826,897 - 131,827,997)(131,721,559 - 131,722,623)
sequence
gaattcaagaggaaccatggacaaagtgagaaagatacacagagataaga
tctaacacaaaacacagattgctgaagtcacatttaaatctctgtgtgaa
gctgagagagagacttccttaagaaattgacttctttcagtgttcaaaag
aacagaaaggggtcaccttgaaagaagtctccaaatgcagtaggaaaaca
catgcaaaggagctgagtcaaagaaggggcatatgctgcgtggggcagcg
gcagggtggttggaacatacagtacagggaatgtgtgctagaaatgacat
tgggacacaatgttccctttaccatctttaagaaactactgccaactagg
aacatgctgagacaaagccaagcacagtaacaaaagggggcttgcctggc
atatgaataaaatttgaatatttaggctgaaaataagacaaagagaaggg
taaggggtatcatgtatcatttcaagtttttgaaaaacttttagacagac
catgttttacatttttctttaatttatcatttccttcatatggcctatcc
tgctaacttcaaggtaatctttactctatctcccaaatccacaaatgctt
ttctttctttctatcaatcaaatcattttattcatgtgcatttacatcct
tagcattcatatgcatttatgtaactagtatttcttctgttctctagttt
catcatccaaaacagagtttctcactatccagttataaactaaatttcag
ttttcaatattattccttattcaaccctatttctgtacctctaaacagag
tcaccactgagacagtctcacattgacattcatcacggggacattgcttt
atgtctcccaatttccctagtttctctaccgttgattatagttttgtcaa
atccagctttaaccccaaaaaacacagaatgcaatcagagcccgcaggat
ggtgtttactgggtaccatccaaagtagcgacatcctgatgattggggat
aggatggagcactggggaaataagtatatgaaaaaaaaagcctcttctgt
ttcccacccagcagtccctgttgcagtagacatgagcagtaca
gaattctaacccctgccctatcagacagatccatgacttcaggtcccttt
ggccttttttgggattaactcagcaatagacttagaagatgtgtacctta
accactatgtatgtttcagtccttcatgttcagtatttgcaataattata
gttctggaaatataaagatccgttgctttattttattgtgtttatgttgt
taacttgttcagttgatatatacttaaaactcatttatgtaattctcttc
tgatcacagaagaattaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaaaaaagagcaggcagaatt
accgcaatagcaaaatatcagtactttctccagagtagtgagaattctgg
ttctactgtataagatacactctgcttcatagagagtcagacatttttac
ccagttaattatgcttaatttgaataaagaaagaatacaatcccaatatt
gtgacagatgatactatagaagaaagaactatacattttcttttttattt
taaatcgctgcttaaagagataaacattttagtaatacaaaggggaaaaa
aaaggtcctgaaatttctcgaagtgcgacattatttatgaagtaatttta
attttactgtccacactcctttaaagctggcttaaaagaatccggatgtt
ttacttttggactgtacctcatttatcaaatgtcaagtgctcccttttat
cagagggacaacactgtagcactatgatggagatgaaacaggagatagag
gattacctttttgtgtctaagatgctcttgatgtcgtgaagtgcctgaac
tctttttcagtttactttcactgaaataatgttttatgagaaatgaagaa
gggaggtctctaaccattatcaaatcttttttgttctttcttaattagtt
aggacttctcacacaacaggttaaggaatctgttgctttgcctttaaaga
atctcccaaaacttaagtgttttttctacttttaaaaaagtgaagggttg
gggaaggttgggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_131826897_131827997
seq2: B6Ng01-257F06.b_48_1140 (reverse)

seq1  TGTACTGCTCAATGTCTACCTGGCAAACAGGGAACCTGCTGGGGTGGGAA  50
      |||||||||| ||||||| |||   ||||||||  ||||| |||||||||
seq2  TGTACTGCTC-ATGTCTA-CTG--CAACAGGGA--CTGCT-GGGTGGGAA  43

seq1  ACAGAAGAGGCCTTTTTTTTCATATACCTTATTTCCCCAGTGCTCCTTCC  100
      ||||||||||| |||||||||||||| ||||||||||||||||||| |||
seq2  ACAGAAGAGGCTTTTTTTTTCATATA-CTTATTTCCCCAGTGCTCCATCC  92

seq1  TATCCCCAATCATCAGGATGTCGCTACTTTGGATGGTACCCAGTAAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCAATCATCAGGATGTCGCTACTTTGGATGGTACCCAGTAAACAC  142

seq1  CATCCTGCGGGCTCTGATTGCATTCTGTGTTTTTTGGGGTTAAAGCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGCGGGCTCTGATTGCATTCTGTGTTTTTTGGGGTTAAAGCTGGA  192

seq1  TTTGACAAAACTATAATCAACGGTAGAGAAACTAGGGAAATTGGGAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAAAACTATAATCAACGGTAGAGAAACTAGGGAAATTGGGAGACA  242

seq1  TAAAGCAATGTCCCCGTGATGAATGTCAATGTGAGACTGTCTCAGTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAATGTCCCCGTGATGAATGTCAATGTGAGACTGTCTCAGTGGTG  292

seq1  ACTCTGTTTAGAGGTACAGAAATAGGGTTGAATAAGGAATAATATTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTTTAGAGGTACAGAAATAGGGTTGAATAAGGAATAATATTGAAA  342

seq1  ACTGAAATTTAGTTTATAACTGGATAGTGAGAAACTCTGTTTTGGATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATTTAGTTTATAACTGGATAGTGAGAAACTCTGTTTTGGATGAT  392

seq1  GAAACTAGAGAACAGAAGAAATACTAGTTACATAAATGCATATGAATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAGAGAACAGAAGAAATACTAGTTACATAAATGCATATGAATGCT  442

seq1  AAGGATGTAAATGCACATGAATAAAATGATTTGATTGATAGAAAGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTAAATGCACATGAATAAAATGATTTGATTGATAGAAAGAAAGA  492

seq1  AAAGCATTTGTGGATTTGGGAGATAGAGTAAAGATTACCTTGAAGTTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTTGTGGATTTGGGAGATAGAGTAAAGATTACCTTGAAGTTAGC  542

seq1  AGGATAGGCCATATGAAGGAAATGATAAATTAAAGAAAAATGTAAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGGCCATATGAAGGAAATGATAAATTAAAGAAAAATGTAAAACAT  592

seq1  GGTCTGTCTAAAAGTTTTTCAAAAACTTGAAATGATACATGATACCCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTCTAAAAGTTTTTCAAAAACTTGAAATGATACATGATACCCCTT  642

seq1  ACCCTTCTCTTTGTCTTATTTTCAGCCTAAATATTCAAATTTTATTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCTCTTTGTCTTATTTTCAGCCTAAATATTCAAATTTTATTCATA  692

seq1  TGCCAGGCAAGCCCCCTTTTGTTACTGTGCTTGGCTTTGTCTCAGCATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCAAGCCCCCTTTTGTTACTGTGCTTGGCTTTGTCTCAGCATGT  742

seq1  TCCTAGTTGGCAGTAGTTTCTTAAAGATGGTAAAGGGAACATTGTGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTGGCAGTAGTTTCTTAAAGATGGTAAAGGGAACATTGTGTCCC  792

seq1  AATGTCATTTCTAGCACACATTCCCTGTACTGTATGTTCCAACCACCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATTTCTAGCACACATTCCCTGTACTGTATGTTCCAACCACCCTG  842

seq1  CCGCTGCCCCACGCAGCATATGCCCCTTCTTTGACTCAGCTCCTTTGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGCCCCACGCAGCATATGCCCCTTCTTTGACTCAGCTCCTTTGCAT  892

seq1  GTGTTTTCCTACTGCATTTGGAGACTTCTTTCAAGGTGACCCCTTTCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCCTACTGCATTTGGAGACTTCTTTCAAGGTGACCCCTTTCTGT  942

seq1  TCTTTTGAACACTGAAAGAAGTCAATTTCTTAAGGAAGTCTCTCTCTCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAACACTGAAAGAAGTCAATTTCTTAAGGAAGTCTCTCTCTCAG  992

seq1  CTTCACACAGAGATTTAAATGTGACTTCAGCAATCTGTGTTTTGTGTTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACACAGAGATTTAAATGTGACTTCAGCAATCTGTGTTTTGTGTTAG  1042

seq1  ATCTTATCTCTGTGTATCTTTCTCACTTTGTCCATGGTTCCTCTTGAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATCTCTGTGTATCTTTCTCACTTTGTCCATGGTTCCTCTTGAATT  1092

seq1  C  1101
      |
seq2  C  1093

seq1: chr1_131721559_131722623
seq2: B6Ng01-257F06.g_66_1130

seq1  GAATTCTAACCCCTGCCCTATCAGACAGATCCATGACTTCAGGTCCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACCCCTGCCCTATCAGACAGATCCATGACTTCAGGTCCCTTT  50

seq1  GGCCTTTTTTGGGATTAACTCAGCAATAGACTTAGAAGATGTGTACCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTTTTGGGATTAACTCAGCAATAGACTTAGAAGATGTGTACCTTA  100

seq1  ACCACTATGTATGTTTCAGTCCTTCATGTTCAGTATTTGCAATAATTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTATGTATGTTTCAGTCCTTCATGTTCAGTATTTGCAATAATTATA  150

seq1  GTTCTGGAAATATAAAGATCCGTTGCTTTATTTTATTGTGTTTATGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGAAATATAAAGATCCGTTGCTTTATTTTATTGTGTTTATGTTGT  200

seq1  TAACTTGTTCAGTTGATATATACTTAAAACTCATTTATGTAATTCTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTTCAGTTGATATATACTTAAAACTCATTTATGTAATTCTCTTC  250

seq1  TGATCACAGAAGAATTAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  300
      ||||||||||||||||    ||||||||||||||||||||||||||||||
seq2  TGATCACAGAAGAATT----AAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  296

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAGCAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAGCAGGCAG  346

seq1  AATTACCGCAATAGCAAAATATCAGTACTTTCTCCAGAGTAGTGAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCGCAATAGCAAAATATCAGTACTTTCTCCAGAGTAGTGAGAATT  396

seq1  CTGGTTCTACTGTATAAGATACACTCTGCTTCATAGAGAGTCAGACATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTACTGTATAAGATACACTCTGCTTCATAGAGAGTCAGACATTT  446

seq1  TTACCCAGTTAATTATGCTTAATTTGAATAAAGAAAGAATACAATCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAGTTAATTATGCTTAATTTGAATAAAGAAAGAATACAATCCCAA  496

seq1  TATTGTGACAGATGATACTATAGAAGAAAGAACTATACATTTTCTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGACAGATGATACTATAGAAGAAAGAACTATACATTTTCTTTTTT  546

seq1  ATTTTAAATCGCTGCTTAAAGAGATAAACATTTTAGTAATACAAAGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATCGCTGCTTAAAGAGATAAACATTTTAGTAATACAAAGGGGA  596

seq1  AAAAAAAGGTCCTGAAATTTCTCGAAGTGCGACATTATTTATGAAGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGTCCTGAAATTTCTCGAAGTGCGACATTATTTATGAAGTAAT  646

seq1  TTTAATTTTACTGTCCACACTCCTTTAAAGCTGGCTTAAAAGAATCCGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTACTGTCCACACTCCTTTAAAGCTGGCTTAAAAGAATCCGGA  696

seq1  TGTTTTACTTTTGGACTGTACCTCATTTATCAAATGTCAAGTGCTCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACTTTTGGACTGTACCTCATTTATCAAATGTCAAGTGCTCCCTT  746

seq1  TTATCAGAGGGACAACACTGTAGCACTATGATGGAGATGAAACAGGAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGAGGGACAACACTGTAGCACTATGATGGAGATGAAACAGGAGAT  796

seq1  AGAGGATTACCTTTTTGTGTCTAAGATGCTCTTGATGTCGTGAAGTGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATTACCTTTTTGTGTCTAAGATGCTCTTGATGTCGTGAAGTGCCT  846

seq1  GAACTCTTTTTCAGTTTACTTTCACTG-AATAATG-TTTATGAGAAATGA  898
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  GAACTCTTTTTCAGTTTACTTTCACTGAAATAATGTTTTATGAGAAATGA  896

seq1  AGAAGGGAGGTCTCTAACCATTATCAAATC-TTTTTGTTCTTTCTTAATT  947
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAAGGGAGGTCTCTAACCATTATCAAATCTTTTTTGTTCTTTCTTAATT  946

seq1  AGTTTAGACTTCTCACACAACAGGTTAAGGGAATCTGTTTGCTTTGCCTT  997
      ||||  |||||||||||||||||||||| |||||||| ||||||||||||
seq2  AGTTAGGACTTCTCACACAACAGGTTAA-GGAATCTG-TTGCTTTGCCTT  994

seq1  TAAAAGAATCTCCCAAAACTTAAGGTGTTTTTCTACTTTTAAAAAAGTGA  1047
      | ||||||||||||||||||||||   |||||||||||||||||||||||
seq2  T-AAAGAATCTCCCAAAACTTAAGTGTTTTTTCTACTTTTAAAAAAGTGA  1043

seq1  --GGGTGGGGA--GGTGGGAAT  1065
        || ||||||  | |||||||
seq2  AGGGTTGGGGAAGGTTGGGAAT  1065