BAC Information

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BAC

Clone NameB6Ng01-257L17
Chromosome1 (Build37)
Map Location 84,614,765 - 84,742,397
singlet/doubletdoublet
Overlap geneDner, Trip12
Upstream gene5033414K04Rik, LOC100039638
Downstream geneFbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257L17.bB6Ng01-257L17.g
ACCGA063353GA063354
length1,1351,164
definitionB6Ng01-257L17.b B6Ng01-257L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,614,765 - 84,615,909)(84,741,231 - 84,742,397)
sequence
gaattctgtctcccagatccctctgaaaaagtagcattgctatttaagta
cagaaaaggctgcctgataagctgtcttgtggaataaaacagacaggaag
gggggggaggtccttcctctatgagcttccggttgagtggttattgtttt
ttattaaagagttcattgcaagaatagctgaaggtttctcagctaacttt
cttttctcaccttacagaaagcaaggccaggcaggccatgaactacacaa
taagaaagacatccctcccagtttctaaactctgcaccagaaatgtttcc
tgcacagctcatgactcaactgcgtcaagggcaaagagggagaaacagaa
gaaaacgagtttcgtctctgagcctctgctccccctcatctgctaagtgt
gaagccaggcgattggctatgcagatggtatacacctgtaactgcagccc
atgggaggcacaagcagaagggttgctccaggtttggggccagcctggtc
tacactagctggttccaagccaagcagagctgtatggactgagactcagc
caaaacacaaaagacaaaaaaaaaaaaaaaaaaaaagcaaacaattaagt
gagctaacagatatgactggcaaaaaaattttaaatgtcagcaaggatat
tttcattatattcactcttagttactttatgtcagccaataaaatacttg
tcagtgtcttttccttgtcatacttttaaagtggacactatatagaattt
cagggagcctagcacaattttggacgaaatgtacagcttgataagaatat
tggggccaagatgacccagtgagtgtgtcacacaaacccagaaacctgag
tttccatccctggaacccgtgtaaagatgaaatgagaaaagctactttac
agagttgtcctctgggctccacatacacagtgtggagcatgcattcatgg
gtgtaagagtacagagagagacagagacagagagaacagactcatcacat
cattacaatataattaaatatcatgtttttagatctatctagctctctag
agacgcacgcacaaatcagagcttttctatcacagtctacaacagcatgt
tgggagactctggcacattctactgagctacagaa

gaattcaaagctagactgggctatttaaactaaaaaacataaaccaaacc
caaaaaagcctgaggctttccattttgtctaagttcatatgaattatgct
tgcttaatatttacatgctccttggagttgtctaaaataactacatgtta
agtttgacagtatctgacttgttagaaccttttaccaggaagaaatattt
aaaagtatgacatttgttcaaaagtatgtagcaaagtaaatttgaataat
tactttttatattactaaattatgtttttatttttataagccaaaaaata
gaggattcttccccccattggtctttgaatagaatttagtagggaaggat
aaaatactgcagaggtgagtgtgcccagatagttgaagagttcttatttc
cagaggaataatccagtaggtacagcatttcattgaggtcagtttttata
acacccttgataacatgaattcacagtggctagagatcatgttcatttca
tgcttttcatatgcagaaaaaccgactcatttagttatttgtaataactt
gtattgagtaatttgagttgttgatgaatcttaaataagttgactttgaa
aataatagaataaccttttttcgtaaattatcttgagcttttctctcaac
agaggatcacaagctttaaaatttttcaacacacatcagttaaaatgtca
gttacaaagacacccagactgtgcaaatgtgaagcagtggaaaggcgggc
ctgtcaagattgatcccctggctctggtgcaagctattgagagatacctt
gtggttagaggtattttccgtatgtgtactttacttctatgtttatgaaa
gtagccttaaaggttatttccctattaattgctgttcttcataaacttta
ggttgtaggaacctctggtcctattagaaataggcatatgttgaacttgc
ttaataggcagaatgtttttatgtatcagatgtttctttttttatagatc
agatgtacattactactgcttctgacacctaaattcctagatacattttt
tttttttggttattcagaatatggagagtaagagaaagatgatgaagaat
agtgatgaatggatggtcaaatgaaaactgaatgatctttggataaggtc
cttttcacatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_84614765_84615909
seq2: B6Ng01-257L17.b_43_1177

seq1  GAATTCTGTCTCCCAGATCCCTCTGAAAAAGTAGCATTGCTATTTAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTCCCAGATCCCTCTGAAAAAGTAGCATTGCTATTTAAGTA  50

seq1  CAGAAAAGGCTGCCTGATAAGCTGTCTTGTGGAATAAAACAGACAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGGCTGCCTGATAAGCTGTCTTGTGGAATAAAACAGACAGGAAG  100

seq1  GGGGGGGAGGTCCTTCCTCTATGAGCTTCCGGTTGAGTGGTTATTGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGAGGTCCTTCCTCTATGAGCTTCCGGTTGAGTGGTTATTGTTTT  150

seq1  TTATTAAAGAGTTCATTGCAAGAATAGCTGAAGGTTTCTCAGCTAACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAGAGTTCATTGCAAGAATAGCTGAAGGTTTCTCAGCTAACTTT  200

seq1  CTTTTCTCACCTTACAGAAAGCAAGGCCAGGCAGGCCATGAACTACACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCACCTTACAGAAAGCAAGGCCAGGCAGGCCATGAACTACACAA  250

seq1  TAAGAAAGACATCCCTCCCAGTTTCTAAACTCTGCACCAGAAATGTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAGACATCCCTCCCAGTTTCTAAACTCTGCACCAGAAATGTTTCC  300

seq1  TGCACAGCTCATGACTCAACTGCGTCAAGGGCAAAGAGGGAGAAACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGCTCATGACTCAACTGCGTCAAGGGCAAAGAGGGAGAAACAGAA  350

seq1  GAAAACGAGTTTCGTCTCTGAGCCTCTGCTCCCCCTCATCTGCTAAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGAGTTTCGTCTCTGAGCCTCTGCTCCCCCTCATCTGCTAAGTGT  400

seq1  GAAGCCAGGCGATTGGCTATGCAGATGGTATACACCTGTAACTGCAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGGCGATTGGCTATGCAGATGGTATACACCTGTAACTGCAGCCC  450

seq1  ATGGGAGGCACAAGCAGAAGGGTTGCTCCAGGTTTGGGGCCAGCCTGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGGCACAAGCAGAAGGGTTGCTCCAGGTTTGGGGCCAGCCTGGTC  500

seq1  TACACTAGCTGGTTCCAAGCCAAGCAGAGCTGTATGGACTGAGACTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTAGCTGGTTCCAAGCCAAGCAGAGCTGTATGGACTGAGACTCAGC  550

seq1  CAAAACACAAAAGACAAAAAAAAAAAAAAAAAAAAAGCAAACAATTAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACAAAAGACAAAAAAAAAAAAAAAAAAAAAGCAAACAATTAAGT  600

seq1  GAGCTAACAGATATGACTGGCAAAAAAATTTTAAATGTCAGCAAGGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAACAGATATGACTGGCAAAAAAATTTTAAATGTCAGCAAGGATAT  650

seq1  TTTCATTATATTCACTCTTAGTTACTTTATGTCAGCCAATAAAATACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTATATTCACTCTTAGTTACTTTATGTCAGCCAATAAAATACTTG  700

seq1  TCAGTGTCTTTTCCTTGTCATACTTTTAAAGTGGACACTATATAGAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCTTTTCCTTGTCATACTTTTAAAGTGGACACTATATAGAATTT  750

seq1  CAGGGAGCCTAGCACAATTTTGGACGAAATGTACAGCTTGATAAGAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGCCTAGCACAATTTTGGACGAAATGTACAGCTTGATAAGAATAT  800

seq1  TGGGGCCAAGATGACCCAGTGAGTGTGTCACACAAACCCAGAAACCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCAAGATGACCCAGTGAGTGTGTCACACAAACCCAGAAACCTGAG  850

seq1  -TTCCATCCCTGGAACCCGTGTAAAGATGAAATGAGAAAAGCTACTTTAC  899
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCCCTGGAACCCGTGTAAAGATGAAATGAGAAAAGCTACTTTAC  900

seq1  AGAGTTGTCCTCTGGCCTCCACATACACAGTGTGGAGCATGCATTCATGG  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAGTTGTCCTCTGGGCTCCACATACACAGTGTGGAGCATGCATTCATGG  950

seq1  GTGTAAGAGTACAGAGAGAGACAGAGACAGAGAGAACAGACTCA-CACA-  997
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  GTGTAAGAGTACAGAGAGAGACAGAGACAGAGAGAACAGACTCATCACAT  1000

seq1  CATAACAATAATAATAAATACAATGTTTTTAAGAATCTATCTTAGCTCTC  1047
      ||| ||||||  | ||||||  |||||||||   ||||||| ||||||| 
seq2  CATTACAATATAATTAAATATCATGTTTTTA--GATCTATC-TAGCTCT-  1046

seq1  CTAAGGAAGACGGCACGGCACAAATCCAGAGC-TTTCTATTCACAGTCTA  1096
      |||    |||| |||| |||||||| |||||| |||||| ||||||||||
seq2  CTA---GAGAC-GCAC-GCACAAAT-CAGAGCTTTTCTA-TCACAGTCTA  1089

seq1  CAAAACAGCATG-TGGGAGACTCTGGCACATCCTACCCGAGGCTACAGAA  1145
      |  ||||||||| |||||||||||||||||| ||| | || |||||||||
seq2  C--AACAGCATGTTGGGAGACTCTGGCACATTCTA-CTGA-GCTACAGAA  1135


seq1: chr1_84741231_84742397
seq2: B6Ng01-257L17.g_66_1229 (reverse)

seq1  ACACATGTGAAAAGGACCTTA-CCAAAGACTCATCTATTTCTTCATCTGA  49
      ||||||||||||||||||||| ||||||| ||||  | || ||||| |||
seq2  ACACATGTGAAAAGGACCTTATCCAAAGA-TCATTCAGTT-TTCATTTGA  48

seq1  CCCATCA-TCATCACTA-TCTTCATCATC-TTCTCTTACTCTTCCATATC  96
      ||   || ||||||||| ||||||||||| ||||||||||| ||||||| 
seq2  CCATCCATTCATCACTATTCTTCATCATCTTTCTCTTACTC-TCCATATT  97

seq1  CTGAATAACCCAAAAAAAAAATTGTTATCTAGGAATTTTAGGTGTCAGAA  146
      |||||||||| |||||||||| || |||||||||| ||||||||||||||
seq2  CTGAATAACCAAAAAAAAAAAATG-TATCTAGGAA-TTTAGGTGTCAGAA  145

seq1  GCAGTAGTTAATGTTACATTCTGATCTAT-AAAAAAGAAACATTCTGATA  195
      ||||||| ||||| |||| |||||||||| |||||||||||| |||||||
seq2  GCAGTAG-TAATG-TACA-TCTGATCTATAAAAAAAGAAACA-TCTGATA  191

seq1  CAT-AAAACATTCTGCCTATTAAGCAAGTTCAACATATGCCTATTTCTAA  244
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAACATTCTGCCTATTAAGCAAGTTCAACATATGCCTATTTCTAA  241

seq1  TAGGACCAGAGGTTCCTACAACCTAAAGTTTATGAAGAACAGCAATTAAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCAGAGGTTCCTACAACCTAAAGTTTATGAAGAACAGCAATTAAT  291

seq1  AGGGAAATAACCTTTAAGGCTACTTTCATAAACATAGAAGTAAAGTACAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATAACCTTTAAGGCTACTTTCATAAACATAGAAGTAAAGTACAC  341

seq1  ATACGGAAAATACCTCTAACCACAAGGTATCTCTCAATAGCTTGCACCAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGAAAATACCTCTAACCACAAGGTATCTCTCAATAGCTTGCACCAG  391

seq1  AGCCAGGGGATCAATCTTGACAGGCCCGCCTTTCCACTGCTTCACATTTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGGATCAATCTTGACAGGCCCGCCTTTCCACTGCTTCACATTTG  441

seq1  CACAGTCTGGGTGTCTTTGTAACTGACATTTTAACTGATGTGTGTTGAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCTGGGTGTCTTTGTAACTGACATTTTAACTGATGTGTGTTGAAA  491

seq1  AATTTTAAAGCTTGTGATCCTCTGTTGAGAGAAAAGCTCAAGATAATTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAGCTTGTGATCCTCTGTTGAGAGAAAAGCTCAAGATAATTTA  541

seq1  CGAAAAAAGGTTATTCTATTATTTTCAAAGTCAACTTATTTAAGATTCAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAAAGGTTATTCTATTATTTTCAAAGTCAACTTATTTAAGATTCAT  591

seq1  CAACAACTCAAATTACTCAATACAAGTTATTACAAATAACTAAATGAGTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACTCAAATTACTCAATACAAGTTATTACAAATAACTAAATGAGTC  641

seq1  GGTTTTTCTGCATATGAAAAGCATGAAATGAACATGATCTCTAGCCACTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCTGCATATGAAAAGCATGAAATGAACATGATCTCTAGCCACTG  691

seq1  TGAATTCATGTTATCAAGGGTGTTATAAAAACTGACCTCAATGAAATGCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCATGTTATCAAGGGTGTTATAAAAACTGACCTCAATGAAATGCT  741

seq1  GTACCTACTGGATTATTCCTCTGGAAATAAGAACTCTTCAACTATCTGGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTACTGGATTATTCCTCTGGAAATAAGAACTCTTCAACTATCTGGG  791

seq1  CACACTCACCTCTGCAGTATTTTATCCTTCCCTACTAAATTCTATTCAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACCTCTGCAGTATTTTATCCTTCCCTACTAAATTCTATTCAAA  841

seq1  GACCAATGGGGGGAAGAATCCTCTATTTTTTGGCTTATAAAAATAAAAAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATGGGGGGAAGAATCCTCTATTTTTTGGCTTATAAAAATAAAAAC  891

seq1  ATAATTTAGTAATATAAAAAGTAATTATTCAAATTTACTTTGCTACATAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAGTAATATAAAAAGTAATTATTCAAATTTACTTTGCTACATAC  941

seq1  TTTTGAACAAATGTCATACTTTTAAATATTTCTTCCTGGTAAAAGGTTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAACAAATGTCATACTTTTAAATATTTCTTCCTGGTAAAAGGTTCT  991

seq1  AACAAGTCAGATACTGTCAAACTTAACATGTAGTTATTTTAGACAACTCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTCAGATACTGTCAAACTTAACATGTAGTTATTTTAGACAACTCC  1041

seq1  AAGGAGCATGTAAATATTAAGCAAGCATAATTCATATGAACTTAGACAAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCATGTAAATATTAAGCAAGCATAATTCATATGAACTTAGACAAA  1091

seq1  ATGGAAAGCCTCAGGCTTTTTTGGGTTTGGTTTATGTTTTTTAGTTTAAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGCCTCAGGCTTTTTTGGGTTTGGTTTATGTTTTTTAGTTTAAA  1141

seq1  TAGCCCAGTCTAGCTTTGAATTC  1167
      |||||||||||||||||||||||
seq2  TAGCCCAGTCTAGCTTTGAATTC  1164


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