BAC Information

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BAC

Clone NameB6Ng01-257O11
Chromosome1 (Build37)
Map Location 148,617,041 - 148,749,173
singlet/doubletdoublet
Overlap geneB830045N13Rik
Upstream geneLOC383571, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257O11.bB6Ng01-257O11.g
ACCGA063482GA063483
length1,1071,177
definitionB6Ng01-257O11.b B6Ng01-257O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,748,053 - 148,749,173)(148,617,041 - 148,618,009)
sequence
gaattctcaccacctcactagtagacagcttgagtctatgacgaagcaag
caagaaaacagatccaggcggcgctgaccgggtggggagagtttatttac
acggtctcttatctctagtagctgcaaaagtgccgagtcctgggatccct
gagtataagggtagtccagctgcaaaatcaggtcccgaatggcttcaggg
tcaaagtgcatgctgtagccaaacacttggatgttgttgattttcatgta
gcccaggttccgggatgggtcaataaactccaaaggctcataataaatgc
tctcattgctgttggggccatttgccttgatgcgactcctcaggtagatg
tgtactgtctcaaaaaatgtcttccatttgtttcccagagtcagtgtcca
gttatagcactgtagagggaggtccagcttagtccgctcccagtctggaa
agctgctctcactcacaggcataaaccagctctcggagtggctgcctcca
aagggattgacataaacagccagcactggctccaacgtgctgtttttagt
taagcaaatctgtaaagagagacccaagatcatgtggaccagactggact
tgtatttgttactcttcaaggtcaggagcatccgctttctccaggaagga
tcaaaccagctgttgaggcgcatgtcattgctgataaagatggcatgtac
ttctattcgtctatctgttttctgcaacaggtatttcatctctaggtctt
gtaggtcggtctcaaagccaatgtagtgatcggttgactcagcgacttca
ggcttgcagagtccctggctcagcatgtagcctgtgttgcagtgccacac
cgggtacggttgtcagtgcacaggtaaggcagcagaggcatcgcccacag
tacagggcagaaaggctgtgcacactacctggtcgttggggcatgtgcag
gagtggtttcctcggagaagcttcccagaagccattctcattgcagtaga
gaaagactggatgcgagtgagccagtaggtgatgtctagatataacaacg
atcttataatgaatacttagatcctgtgtgttggtgtatgatgttgtggt
gtttgtg

gaattctttatatatatattggatattagctttctatgggatgtaagatt
ggtaaagatcttttcccaatctgttggttgctgttttttcctattgacag
tgtccattacctagcagaatctttgttgttttatgaagtcctattagatc
ttagagcataaaccattggtgttctgttcagggaatttttccttgtacct
atatgtttgggaatcttcctcactttcttttctattagtttcattgtgtc
tgattttatgtgaagagccttgatccacttggacttgagctttgtacaag
gagataagaatagctgagtggtggtggtgcactcttttaatcccaacact
taggaggcagaggcgggtggatttctgagttcaaggccaggctggtctac
agagtgagttccaggacagccagggctacatagagaaaccctgtctcgaa
aaaacaaaacaaaacaaaaaataaaattgattagccttcttctacatgct
gatttccagttgagccagcaccatttgttgaaaatgctgtctttttttcc
acttgatggttttaactcctttatcaaagatgaagtggccataggtgtgt
gggttgatttctggatcttcaattctattccattgatctgcctgtcactg
tactaataccatgcagttttgatcactatagctctgtaatacagtgtaag
ggtgaggatggtcctttggttctaatattcacttatcagattgtatatac
cttgtgcttatgtatgtcttaaaagggaaataattattgttttacctgta
taaaatttgcaactgtgaggaatacaattgtaagtacttatagtaaacag
gtttttcaaggcatagactctaaggctagttactatgtagtatgaggatc
ccatgggtgcatccttttgaacagactgaagtacatttagctccaaaact
gaatgcattctctaatttcaagttgaaaatagattttttttctattacat
caagtttaaacatattaccttttgtttagctttaattcttcatgacatat
aaaaatatatttatatattatattatattattgacaaaatcaaagttatt
ctcctgaactaagcacctgccatggtgcacacattggaactgatcctccc
atccccgtcccatggcgtattgtacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_148748053_148749173
seq2: B6Ng01-257O11.b_49_1155 (reverse)

seq1  CACAAACACACACATACA-CAAACACAAACACACAGGATCTAAGTATTCA  49
      ||||||||| |||| ||| || |||| |||||||||||||||||||||||
seq2  CACAAACAC-CACA-ACATCATACACCAACACACAGGATCTAAGTATTCA  48

seq1  -TATAGATTTGTTTTGTTTTATATTTCTAGAACATCAACCTACTGGCTCA  98
       ||||   | ||| |      ||| ||||| ||||| |||||||||||||
seq2  TTATAAGATCGTTGT------TATATCTAG-ACATC-ACCTACTGGCTCA  90

seq1  CTCGCATCCAGTCTTTTCTCTACTGCAATGAGAATGGCCTTCTGGGAAGC  148
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  CTCGCATCCAGTC-TTTCTCTACTGCAATGAGAATGG-CTTCTGGGAAGC  138

seq1  TTCTCCGAGGAAACCCACTCCTGCACATGCCCCAACGACCAGGTAGTGTG  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCTCCGAGGAAA-CCACTCCTGCACATGCCCCAACGACCAGGTAGTGTG  187

seq1  CACAGCCTTTCTGCCCTGTACTGTGGGCGATGCCTCTGCCTGCCTTACCT  248
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACAGCCTTTCTGCCCTGTACTGTGGGCGATGCCTCTG-CTGCCTTACCT  236

seq1  GTGCACCTGACAACCGTACCCGGTGTGGCACCTGCAACACAGGCTACATG  298
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  GTGCA-CTGACAACCGTACCCGGTGTGGCA-CTGCAACACAGGCTACATG  284

seq1  CTGAGCCAGGGACTCTGCAAGCCTGAAGTCGCTGAGTCAACCGATCACTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCAGGGACTCTGCAAGCCTGAAGTCGCTGAGTCAACCGATCACTA  334

seq1  CATTGGCTTTGAGACCGACCTACAAGACCTAGAGATGAAATACCTGTTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCTTTGAGACCGACCTACAAGACCTAGAGATGAAATACCTGTTGC  384

seq1  AGAAAACAGATAGACGAATAGAAGTACATGCCATCTTTATCAGCAATGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGATAGACGAATAGAAGTACATGCCATCTTTATCAGCAATGAC  434

seq1  ATGCGCCTCAACAGCTGGTTTGATCCTTCCTGGAGAAAGCGGATGCTCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCCTCAACAGCTGGTTTGATCCTTCCTGGAGAAAGCGGATGCTCCT  484

seq1  GACCTTGAAGAGTAACAAATACAAGTCCAGTCTGGTCCACATGATCTTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGAAGAGTAACAAATACAAGTCCAGTCTGGTCCACATGATCTTGG  534

seq1  GTCTCTCTTTACAGATTTGCTTAACTAAAAACAGCACGTTGGAGCCAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTTTACAGATTTGCTTAACTAAAAACAGCACGTTGGAGCCAGTG  584

seq1  CTGGCTGTTTATGTCAATCCCTTTGGAGGCAGCCACTCCGAGAGCTGGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTTTATGTCAATCCCTTTGGAGGCAGCCACTCCGAGAGCTGGTT  634

seq1  TATGCCTGTGAGTGAGAGCAGCTTTCCAGACTGGGAGCGGACTAAGCTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTGTGAGTGAGAGCAGCTTTCCAGACTGGGAGCGGACTAAGCTGG  684

seq1  ACCTCCCTCTACAGTGCTATAACTGGACACTGACTCTGGGAAACAAATGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTCTACAGTGCTATAACTGGACACTGACTCTGGGAAACAAATGG  734

seq1  AAGACATTTTTTGAGACAGTACACATCTACCTGAGGAGTCGCATCAAGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTTTTTGAGACAGTACACATCTACCTGAGGAGTCGCATCAAGGC  784

seq1  AAATGGCCCCAACAGCAATGAGAGCATTTATTATGAGCCTTTGGAGTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCCCCAACAGCAATGAGAGCATTTATTATGAGCCTTTGGAGTTTA  834

seq1  TTGACCCATCCCGGAACCTGGGCTACATGAAAATCAACAACATCCAAGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCATCCCGGAACCTGGGCTACATGAAAATCAACAACATCCAAGTG  884

seq1  TTTGGCTACAGCATGCACTTTGACCCTGAAGCCATTCGGGACCTGATTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTACAGCATGCACTTTGACCCTGAAGCCATTCGGGACCTGATTTT  934

seq1  GCAGCTGGACTACCCTTATACTCAGGGATCCCAGGACTCGGCACTTTTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGACTACCCTTATACTCAGGGATCCCAGGACTCGGCACTTTTGC  984

seq1  AGCTACTAGAGATAAGAGACCGTGTAAATAAACTCTCCCCACCCGGTCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTAGAGATAAGAGACCGTGTAAATAAACTCTCCCCACCCGGTCAG  1034

seq1  CGCCGCCTGGATCTGTTTTCTTGCTTGCTTCGTCATAGACTCAAGCTGTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCCTGGATCTGTTTTCTTGCTTGCTTCGTCATAGACTCAAGCTGTC  1084

seq1  TACTAGTGAGGTGGTGAGAATTC  1121
      |||||||||||||||||||||||
seq2  TACTAGTGAGGTGGTGAGAATTC  1107


seq1: chr1_148617041_148618009
seq2: B6Ng01-257O11.g_283_1244

seq1  TTCCTCACTTTCTTTTCTATTAGTTTCATTGTGTCTGATTTTATGTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCACTTTCTTTTCTATTAGTTTCATTGTGTCTGATTTTATGTGAAG  50

seq1  AGCCTTGATCCACTTGGACTTGAGCTTTGTACAAGGAGATAAGAATAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGATCCACTTGGACTTGAGCTTTGTACAAGGAGATAAGAATAGCT  100

seq1  GAGTGGTGGTGGTGCACTCTTTTAATCCCAACACTTAGGAGGCAGAGGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTGGTGGTGCACTCTTTTAATCCCAACACTTAGGAGGCAGAGGCG  150

seq1  GGTGGATTTCTGAGTTCAAGGCCAGGCTGGTCTACAGAGTGAGTTCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTTCTGAGTTCAAGGCCAGGCTGGTCTACAGAGTGAGTTCCAGG  200

seq1  ACAGCCAGGGCTACATAGAGAAACCCTGTCTCGAAAAAACAAAACAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGGCTACATAGAGAAACCCTGTCTCGAAAAAACAAAACAAAAC  250

seq1  AAAAAATAAAATTGATTAGCCTTCTTCTACATGCTGATTTCCAGTTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAATTGATTAGCCTTCTTCTACATGCTGATTTCCAGTTGAGC  300

seq1  CAGCACCATTTGTTGAAAATGCTGTCTTTTTTTCCACTTGATGGTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCATTTGTTGAAAATGCTGTCTTTTTTTCCACTTGATGGTTTTAA  350

seq1  CTCCTTTATCAAAGATGAAGTGGCCATAGGTGTGTGGGTTGATTTCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTATCAAAGATGAAGTGGCCATAGGTGTGTGGGTTGATTTCTGGA  400

seq1  TCTTCAATTCTATTCCATTGATCTGCCTGTCACTGTACTAATACCATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATTCTATTCCATTGATCTGCCTGTCACTGTACTAATACCATGCA  450

seq1  GTTTTGATCACTATAGCTCTGTAATACAGTGTAAGGGTGAGGATGGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATCACTATAGCTCTGTAATACAGTGTAAGGGTGAGGATGGTCCT  500

seq1  TTGGTTCTAATATTCACTTATCAGATTGTATATACCTTGTGCTTATGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTAATATTCACTTATCAGATTGTATATACCTTGTGCTTATGTAT  550

seq1  GTCTTAAAAGGGAAATAATTATTGTTTTACCTGTATAAAATTTGCAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAAAGGGAAATAATTATTGTTTTACCTGTATAAAATTTGCAACTG  600

seq1  TGAGGAATACAATTGTAAGTACTTATAGTAAACAGGTTTTTCAAGGCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAATACAATTGTAAGTACTTATAGTAAACAGGTTTTTCAAGGCATA  650

seq1  GACTCTAAGGCTAGTTACTATGTAGTATGAGGATCCCATGGGTGCATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAAGGCTAGTTACTATGTAGTATGAGGATCCCATGGGTGCATCCT  700

seq1  TTTGAACAGACTGAAGTACAATTAGCTCCAAAACTGAATGCATTCTCTAA  750
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTGAACAGACTGAAGTACATTTAGCTCCAAAACTGAATGCATTCTCTAA  750

seq1  ATTTTCAAAGTTGAAAAATAGA-TTTTTTTCTATTACATCAGGTTTAAAC  799
        |||| |||||| |||||||| |||||||||||||||||| ||||||||
seq2  --TTTC-AAGTTG-AAAATAGATTTTTTTTCTATTACATCAAGTTTAAAC  796

seq1  ATATTACCTTTTGTTTAGGCTTTTAATGGTTCATGACATTATAAAAATTA  849
      ||||||||||||||||||   ||||||  ||||||||| |||||||| ||
seq2  ATATTACCTTTTGTTTAG--CTTTAATTCTTCATGACA-TATAAAAA-TA  842

seq1  TATATATA-ATTATA-TATAT--ATGACAAAAATCAAAATTA-TCT-CTG  893
      ||| |||| |||||| |||||   |||| ||||||||| ||| ||| |||
seq2  TATTTATATATTATATTATATTATTGAC-AAAATCAAAGTTATTCTCCTG  891

seq1  AACTAAGGCACTGCCATTTGTTTGCCACACATT-GCACTGCTCCTCCCCA  942
      |||||||   ||||||  || |   |||||||| | |||| ||||||   
seq2  AACTAAGCACCTGCCA--TGGT--GCACACATTGGAACTGATCCTCC---  934

seq1  CCCCCCCGCCCCATGGCTTATTG-ACCA  969
      |  ||||| |||||||| ||||| ||||
seq2  CATCCCCGTCCCATGGCGTATTGTACCA  962


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